Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06285

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06275 and A4249_RS06280 are separated by 226 nucleotidesA4249_RS06280 and A4249_RS06285 are separated by 87 nucleotidesA4249_RS06285 and A4249_RS06290 are separated by 385 nucleotides A4249_RS06275: A4249_RS06275 - 30S ribosomal protein S2, at 1,277,984 to 1,278,847 _RS06275 A4249_RS06280: A4249_RS06280 - DUF4142 domain-containing protein, at 1,279,074 to 1,279,670 _RS06280 A4249_RS06285: A4249_RS06285 - DNA polymerase III subunit alpha, at 1,279,758 to 1,283,222 _RS06285 A4249_RS06290: A4249_RS06290 - peptide-methionine (S)-S-oxide reductase MsrA, at 1,283,608 to 1,284,231 _RS06290 Position (kb) 1279 1280 1281 1282 1283 1284Strain fitness (log2 ratio) -2 -1 0 1 2at 1279.075 kb on + strandat 1279.075 kb on + strandat 1279.076 kb on - strandat 1279.076 kb on - strandat 1279.076 kb on - strandat 1279.237 kb on + strand, within A4249_RS06280at 1279.237 kb on + strand, within A4249_RS06280at 1279.238 kb on - strand, within A4249_RS06280at 1279.238 kb on - strand, within A4249_RS06280at 1279.238 kb on - strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.462 kb on + strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.463 kb on - strand, within A4249_RS06280at 1279.663 kb on + strandat 1279.663 kb on + strandat 1279.663 kb on + strandat 1279.664 kb on - strandat 1279.664 kb on - strandat 1279.664 kb on - strandat 1279.664 kb on - strandat 1279.686 kb on - strandat 1279.759 kb on + strandat 1279.760 kb on - strandat 1279.760 kb on - strandat 1279.760 kb on - strandat 1283.256 kb on - strandat 1283.256 kb on - strandat 1283.256 kb on - strandat 1283.260 kb on + strandat 1283.261 kb on - strandat 1283.261 kb on - strandat 1283.261 kb on - strandat 1283.274 kb on + strandat 1283.364 kb on + strandat 1283.364 kb on + strandat 1283.364 kb on + strandat 1283.364 kb on + strandat 1283.365 kb on - strandat 1283.365 kb on - strandat 1283.365 kb on - strandat 1283.365 kb on - strandat 1283.365 kb on - strandat 1283.365 kb on - strandat 1283.373 kb on + strandat 1283.373 kb on + strandat 1283.374 kb on - strandat 1283.374 kb on - strandat 1283.426 kb on + strandat 1283.426 kb on + strandat 1283.426 kb on + strandat 1283.427 kb on - strandat 1283.427 kb on - strandat 1283.427 kb on - strandat 1283.427 kb on - strandat 1283.458 kb on + strandat 1283.458 kb on + strandat 1283.458 kb on + strandat 1283.458 kb on + strandat 1283.459 kb on - strandat 1283.459 kb on - strandat 1283.459 kb on - strandat 1283.459 kb on - strandat 1283.459 kb on - strandat 1283.459 kb on - strandat 1283.513 kb on + strandat 1283.582 kb on + strandat 1283.583 kb on - strandat 1283.583 kb on - strandat 1283.830 kb on + strand, within A4249_RS06290at 1283.830 kb on + strand, within A4249_RS06290at 1283.830 kb on + strand, within A4249_RS06290at 1283.831 kb on - strand, within A4249_RS06290at 1283.831 kb on - strand, within A4249_RS06290at 1283.831 kb on - strand, within A4249_RS06290at 1283.831 kb on - strand, within A4249_RS06290at 1283.831 kb on - strand, within A4249_RS06290at 1283.831 kb on - strand, within A4249_RS06290at 1283.831 kb on - strand, within A4249_RS06290at 1283.831 kb on - strand, within A4249_RS06290at 1283.831 kb on - strand, within A4249_RS06290at 1283.831 kb on - strand, within A4249_RS06290at 1283.862 kb on + strand, within A4249_RS06290at 1283.862 kb on + strand, within A4249_RS06290at 1283.863 kb on - strand, within A4249_RS06290at 1283.863 kb on - strand, within A4249_RS06290at 1283.905 kb on + strand, within A4249_RS06290at 1283.905 kb on + strand, within A4249_RS06290at 1283.906 kb on - strand, within A4249_RS06290at 1283.986 kb on + strand, within A4249_RS06290at 1283.986 kb on + strand, within A4249_RS06290at 1283.987 kb on - strand, within A4249_RS06290at 1284.133 kb on + strand, within A4249_RS06290at 1284.134 kb on - strand, within A4249_RS06290at 1284.134 kb on - strand, within A4249_RS06290at 1284.134 kb on - strand, within A4249_RS06290at 1284.157 kb on + strand, within A4249_RS06290at 1284.157 kb on + strand, within A4249_RS06290at 1284.157 kb on + strand, within A4249_RS06290at 1284.158 kb on - strand, within A4249_RS06290at 1284.158 kb on - strand, within A4249_RS06290at 1284.158 kb on - strand, within A4249_RS06290at 1284.158 kb on - strand, within A4249_RS06290at 1284.158 kb on - strand, within A4249_RS06290at 1284.158 kb on - strand, within A4249_RS06290at 1284.158 kb on - strand, within A4249_RS06290at 1284.158 kb on - strand, within A4249_RS06290

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,279,075 + -0.4
1,279,075 + +0.0
1,279,076 - +0.2
1,279,076 - -0.6
1,279,076 - -1.3
1,279,237 + A4249_RS06280 0.27 -0.6
1,279,237 + A4249_RS06280 0.27 +0.4
1,279,238 - A4249_RS06280 0.27 -0.5
1,279,238 - A4249_RS06280 0.27 -1.0
1,279,238 - A4249_RS06280 0.27 -0.2
1,279,462 + A4249_RS06280 0.65 -0.3
1,279,462 + A4249_RS06280 0.65 -0.2
1,279,462 + A4249_RS06280 0.65 -0.7
1,279,462 + A4249_RS06280 0.65 -0.9
1,279,462 + A4249_RS06280 0.65 +1.0
1,279,462 + A4249_RS06280 0.65 +0.4
1,279,462 + A4249_RS06280 0.65 +0.5
1,279,462 + A4249_RS06280 0.65 +0.2
1,279,462 + A4249_RS06280 0.65 -0.1
1,279,462 + A4249_RS06280 0.65 +0.5
1,279,462 + A4249_RS06280 0.65 -0.7
1,279,462 + A4249_RS06280 0.65 +0.1
1,279,462 + A4249_RS06280 0.65 -0.1
1,279,462 + A4249_RS06280 0.65 +0.1
1,279,462 + A4249_RS06280 0.65 +0.9
1,279,462 + A4249_RS06280 0.65 +0.4
1,279,462 + A4249_RS06280 0.65 +0.3
1,279,462 + A4249_RS06280 0.65 +0.1
1,279,462 + A4249_RS06280 0.65 -0.4
1,279,462 + A4249_RS06280 0.65 -0.2
1,279,462 + A4249_RS06280 0.65 +0.1
1,279,462 + A4249_RS06280 0.65 -1.1
1,279,463 - A4249_RS06280 0.65 +0.3
1,279,463 - A4249_RS06280 0.65 -0.0
1,279,463 - A4249_RS06280 0.65 -0.1
1,279,463 - A4249_RS06280 0.65 -0.0
1,279,463 - A4249_RS06280 0.65 -0.9
1,279,463 - A4249_RS06280 0.65 -0.1
1,279,463 - A4249_RS06280 0.65 -1.0
1,279,463 - A4249_RS06280 0.65 +1.4
1,279,463 - A4249_RS06280 0.65 -0.2
1,279,663 + -0.2
1,279,663 + +0.2
1,279,663 + -0.4
1,279,664 - -0.1
1,279,664 - +0.8
1,279,664 - -2.6
1,279,664 - -1.3
1,279,686 - -1.0
1,279,759 + -0.9
1,279,760 - -1.5
1,279,760 - +0.3
1,279,760 - +0.8
1,283,256 - -0.3
1,283,256 - -0.3
1,283,256 - +1.0
1,283,260 + +1.8
1,283,261 - +0.8
1,283,261 - +0.0
1,283,261 - -0.4
1,283,274 + -0.4
1,283,364 + -0.2
1,283,364 + +0.7
1,283,364 + -0.3
1,283,364 + +0.6
1,283,365 - -0.6
1,283,365 - -1.8
1,283,365 - -0.0
1,283,365 - -0.3
1,283,365 - +0.0
1,283,365 - +0.1
1,283,373 + -0.0
1,283,373 + -0.5
1,283,374 - +0.0
1,283,374 - +0.4
1,283,426 + -0.3
1,283,426 + -0.4
1,283,426 + +0.4
1,283,427 - +0.5
1,283,427 - +1.3
1,283,427 - -0.8
1,283,427 - +0.2
1,283,458 + +0.8
1,283,458 + -0.6
1,283,458 + -0.2
1,283,458 + +0.3
1,283,459 - +0.9
1,283,459 - -0.1
1,283,459 - -0.0
1,283,459 - +0.1
1,283,459 - -0.3
1,283,459 - -0.4
1,283,513 + -0.5
1,283,582 + +0.0
1,283,583 - +0.4
1,283,583 - -1.2
1,283,830 + A4249_RS06290 0.36 -0.1
1,283,830 + A4249_RS06290 0.36 -0.6
1,283,830 + A4249_RS06290 0.36 +0.5
1,283,831 - A4249_RS06290 0.36 +1.5
1,283,831 - A4249_RS06290 0.36 -0.1
1,283,831 - A4249_RS06290 0.36 -0.3
1,283,831 - A4249_RS06290 0.36 -0.2
1,283,831 - A4249_RS06290 0.36 -0.3
1,283,831 - A4249_RS06290 0.36 -0.2
1,283,831 - A4249_RS06290 0.36 +0.1
1,283,831 - A4249_RS06290 0.36 +0.4
1,283,831 - A4249_RS06290 0.36 -0.7
1,283,831 - A4249_RS06290 0.36 -1.7
1,283,862 + A4249_RS06290 0.41 -0.8
1,283,862 + A4249_RS06290 0.41 +1.3
1,283,863 - A4249_RS06290 0.41 -0.4
1,283,863 - A4249_RS06290 0.41 +0.2
1,283,905 + A4249_RS06290 0.48 -1.3
1,283,905 + A4249_RS06290 0.48 -0.6
1,283,906 - A4249_RS06290 0.48 -0.4
1,283,986 + A4249_RS06290 0.61 +1.0
1,283,986 + A4249_RS06290 0.61 +0.3
1,283,987 - A4249_RS06290 0.61 -0.2
1,284,133 + A4249_RS06290 0.84 -0.5
1,284,134 - A4249_RS06290 0.84 +0.5
1,284,134 - A4249_RS06290 0.84 -0.1
1,284,134 - A4249_RS06290 0.84 +0.3
1,284,157 + A4249_RS06290 0.88 -1.1
1,284,157 + A4249_RS06290 0.88 -0.3
1,284,157 + A4249_RS06290 0.88 -1.6
1,284,158 - A4249_RS06290 0.88 -0.0
1,284,158 - A4249_RS06290 0.88 +0.3
1,284,158 - A4249_RS06290 0.88 +0.5
1,284,158 - A4249_RS06290 0.88 +0.8
1,284,158 - A4249_RS06290 0.88 -0.2
1,284,158 - A4249_RS06290 0.88 -0.5
1,284,158 - A4249_RS06290 0.88 -1.0
1,284,158 - A4249_RS06290 0.88 -0.8

Or see this region's nucleotide sequence