Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06245

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS06240 and A4249_RS06245 are separated by 27 nucleotidesA4249_RS06245 and A4249_RS06250 overlap by 4 nucleotidesA4249_RS06250 and A4249_RS06255 overlap by 1 nucleotides A4249_RS06240: A4249_RS06240 - M50 family metallopeptidase, at 1,271,405 to 1,272,622 _RS06240 A4249_RS06245: A4249_RS06245 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 1,272,650 to 1,273,846 _RS06245 A4249_RS06250: A4249_RS06250 - phosphatidate cytidylyltransferase, at 1,273,843 to 1,274,661 _RS06250 A4249_RS06255: A4249_RS06255 - polyprenyl diphosphate synthase, at 1,274,661 to 1,275,353 _RS06255 Position (kb) 1272 1273 1274Strain fitness (log2 ratio) -1 0 1at 1271.802 kb on + strand, within A4249_RS06240at 1271.803 kb on - strand, within A4249_RS06240at 1271.803 kb on - strand, within A4249_RS06240at 1271.803 kb on - strand, within A4249_RS06240at 1272.214 kb on + strand, within A4249_RS06240at 1272.214 kb on + strand, within A4249_RS06240at 1272.214 kb on + strand, within A4249_RS06240at 1272.214 kb on + strand, within A4249_RS06240at 1272.214 kb on + strand, within A4249_RS06240at 1272.214 kb on + strand, within A4249_RS06240at 1272.215 kb on - strand, within A4249_RS06240at 1272.294 kb on + strand, within A4249_RS06240at 1272.294 kb on + strand, within A4249_RS06240at 1272.295 kb on - strand, within A4249_RS06240at 1272.405 kb on + strand, within A4249_RS06240at 1272.405 kb on + strand, within A4249_RS06240at 1272.405 kb on + strand, within A4249_RS06240at 1272.405 kb on + strand, within A4249_RS06240at 1272.406 kb on - strand, within A4249_RS06240at 1272.406 kb on - strand, within A4249_RS06240at 1272.406 kb on - strand, within A4249_RS06240at 1272.406 kb on - strand, within A4249_RS06240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
1,271,802 + A4249_RS06240 0.33 -1.4
1,271,803 - A4249_RS06240 0.33 +0.6
1,271,803 - A4249_RS06240 0.33 +0.5
1,271,803 - A4249_RS06240 0.33 -0.7
1,272,214 + A4249_RS06240 0.66 +1.3
1,272,214 + A4249_RS06240 0.66 -0.3
1,272,214 + A4249_RS06240 0.66 -0.0
1,272,214 + A4249_RS06240 0.66 -0.2
1,272,214 + A4249_RS06240 0.66 +0.8
1,272,214 + A4249_RS06240 0.66 -0.3
1,272,215 - A4249_RS06240 0.67 +0.0
1,272,294 + A4249_RS06240 0.73 +0.7
1,272,294 + A4249_RS06240 0.73 -1.0
1,272,295 - A4249_RS06240 0.73 -0.6
1,272,405 + A4249_RS06240 0.82 -0.3
1,272,405 + A4249_RS06240 0.82 +0.1
1,272,405 + A4249_RS06240 0.82 -0.1
1,272,405 + A4249_RS06240 0.82 -0.6
1,272,406 - A4249_RS06240 0.82 +0.8
1,272,406 - A4249_RS06240 0.82 -0.4
1,272,406 - A4249_RS06240 0.82 -0.5
1,272,406 - A4249_RS06240 0.82 -1.7

Or see this region's nucleotide sequence