Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06005

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05995 and A4249_RS06000 are separated by 177 nucleotidesA4249_RS06000 and A4249_RS06005 are separated by 42 nucleotidesA4249_RS06005 and A4249_RS06010 overlap by 1 nucleotidesA4249_RS06010 and A4249_RS06015 overlap by 4 nucleotidesA4249_RS06015 and A4249_RS06020 overlap by 4 nucleotides A4249_RS05995: A4249_RS05995 - sodium-translocating pyrophosphatase, at 1,221,033 to 1,223,180 _RS05995 A4249_RS06000: A4249_RS06000 - hypothetical protein, at 1,223,358 to 1,223,789 _RS06000 A4249_RS06005: A4249_RS06005 - thiamine-phosphate kinase, at 1,223,832 to 1,224,821 _RS06005 A4249_RS06010: A4249_RS06010 - transcription antitermination factor NusB, at 1,224,821 to 1,225,345 _RS06010 A4249_RS06015: A4249_RS06015 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,225,342 to 1,225,803 _RS06015 A4249_RS06020: A4249_RS06020 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 1,225,800 to 1,226,933 _RS06020 Position (kb) 1223 1224 1225Strain fitness (log2 ratio) -2 -1 0 1 2at 1222.920 kb on + strand, within A4249_RS05995at 1222.920 kb on + strand, within A4249_RS05995at 1222.921 kb on - strand, within A4249_RS05995at 1222.921 kb on - strand, within A4249_RS05995at 1222.921 kb on - strand, within A4249_RS05995at 1222.921 kb on - strand, within A4249_RS05995at 1222.921 kb on - strand, within A4249_RS05995at 1222.954 kb on + strand, within A4249_RS05995at 1222.955 kb on - strand, within A4249_RS05995at 1222.955 kb on - strand, within A4249_RS05995at 1222.955 kb on - strand, within A4249_RS05995at 1222.972 kb on + strandat 1222.973 kb on - strandat 1222.973 kb on - strandat 1223.017 kb on + strandat 1223.017 kb on + strandat 1223.017 kb on + strandat 1223.017 kb on + strandat 1223.018 kb on - strandat 1223.018 kb on - strandat 1223.128 kb on + strandat 1223.128 kb on + strandat 1223.128 kb on + strandat 1223.129 kb on - strandat 1223.129 kb on - strandat 1223.165 kb on + strandat 1223.165 kb on + strandat 1223.165 kb on + strandat 1223.165 kb on + strandat 1223.165 kb on + strandat 1223.165 kb on + strandat 1223.165 kb on + strandat 1223.165 kb on + strandat 1223.165 kb on + strandat 1223.165 kb on + strandat 1223.165 kb on + strandat 1223.165 kb on + strandat 1223.165 kb on + strandat 1223.166 kb on - strandat 1223.166 kb on - strandat 1223.166 kb on - strandat 1223.166 kb on - strandat 1223.166 kb on - strandat 1223.166 kb on - strandat 1223.166 kb on - strandat 1223.166 kb on - strandat 1223.166 kb on - strandat 1223.188 kb on + strandat 1223.513 kb on + strand, within A4249_RS06000at 1223.513 kb on + strand, within A4249_RS06000at 1223.514 kb on - strand, within A4249_RS06000at 1223.629 kb on + strand, within A4249_RS06000at 1223.629 kb on + strand, within A4249_RS06000at 1223.629 kb on + strand, within A4249_RS06000at 1223.629 kb on + strand, within A4249_RS06000at 1223.629 kb on + strand, within A4249_RS06000at 1223.629 kb on + strand, within A4249_RS06000at 1223.629 kb on + strand, within A4249_RS06000at 1223.629 kb on + strand, within A4249_RS06000at 1223.629 kb on + strand, within A4249_RS06000at 1223.629 kb on + strand, within A4249_RS06000at 1223.629 kb on + strand, within A4249_RS06000at 1223.629 kb on + strand, within A4249_RS06000at 1223.629 kb on + strand, within A4249_RS06000at 1223.629 kb on + strand, within A4249_RS06000at 1223.630 kb on - strand, within A4249_RS06000at 1223.630 kb on - strand, within A4249_RS06000at 1223.630 kb on - strand, within A4249_RS06000at 1223.630 kb on - strand, within A4249_RS06000at 1223.630 kb on - strand, within A4249_RS06000at 1223.780 kb on + strandat 1223.780 kb on + strandat 1223.780 kb on + strandat 1223.780 kb on + strandat 1223.780 kb on + strandat 1223.780 kb on + strandat 1223.780 kb on + strandat 1223.780 kb on + strandat 1223.780 kb on + strandat 1223.781 kb on - strandat 1223.781 kb on - strandat 1223.781 kb on - strandat 1223.781 kb on - strandat 1223.781 kb on - strandat 1223.814 kb on + strandat 1223.815 kb on - strandat 1223.815 kb on - strandat 1224.822 kb on + strandat 1224.822 kb on + strandat 1224.822 kb on + strandat 1224.822 kb on + strandat 1224.822 kb on + strandat 1224.822 kb on + strandat 1224.823 kb on - strandat 1224.823 kb on - strandat 1224.823 kb on - strandat 1224.823 kb on - strandat 1224.823 kb on - strandat 1224.823 kb on - strandat 1224.843 kb on - strandat 1224.843 kb on - strandat 1225.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,222,920 + A4249_RS05995 0.88 -0.6
1,222,920 + A4249_RS05995 0.88 +1.8
1,222,921 - A4249_RS05995 0.88 +0.3
1,222,921 - A4249_RS05995 0.88 -0.0
1,222,921 - A4249_RS05995 0.88 -0.0
1,222,921 - A4249_RS05995 0.88 +0.5
1,222,921 - A4249_RS05995 0.88 +1.4
1,222,954 + A4249_RS05995 0.89 +0.7
1,222,955 - A4249_RS05995 0.89 -0.2
1,222,955 - A4249_RS05995 0.89 +0.1
1,222,955 - A4249_RS05995 0.89 +0.5
1,222,972 + -0.6
1,222,973 - +0.2
1,222,973 - +0.1
1,223,017 + +0.4
1,223,017 + -0.9
1,223,017 + -0.1
1,223,017 + -0.7
1,223,018 - -0.0
1,223,018 - -0.7
1,223,128 + -0.6
1,223,128 + +0.4
1,223,128 + +0.2
1,223,129 - +0.9
1,223,129 - +1.4
1,223,165 + +0.5
1,223,165 + -1.0
1,223,165 + +0.1
1,223,165 + -0.1
1,223,165 + -0.9
1,223,165 + +0.0
1,223,165 + +0.6
1,223,165 + -0.2
1,223,165 + -0.3
1,223,165 + -0.2
1,223,165 + +0.5
1,223,165 + +0.2
1,223,165 + -0.9
1,223,166 - -0.3
1,223,166 - +0.1
1,223,166 - -0.2
1,223,166 - +0.5
1,223,166 - -1.9
1,223,166 - +0.4
1,223,166 - +0.4
1,223,166 - -0.1
1,223,166 - -0.3
1,223,188 + +0.4
1,223,513 + A4249_RS06000 0.36 -0.3
1,223,513 + A4249_RS06000 0.36 -0.1
1,223,514 - A4249_RS06000 0.36 -1.3
1,223,629 + A4249_RS06000 0.63 -0.2
1,223,629 + A4249_RS06000 0.63 -1.2
1,223,629 + A4249_RS06000 0.63 -0.1
1,223,629 + A4249_RS06000 0.63 +0.0
1,223,629 + A4249_RS06000 0.63 +0.6
1,223,629 + A4249_RS06000 0.63 -0.0
1,223,629 + A4249_RS06000 0.63 -0.5
1,223,629 + A4249_RS06000 0.63 -0.4
1,223,629 + A4249_RS06000 0.63 -1.1
1,223,629 + A4249_RS06000 0.63 +0.3
1,223,629 + A4249_RS06000 0.63 +0.2
1,223,629 + A4249_RS06000 0.63 -0.3
1,223,629 + A4249_RS06000 0.63 -1.0
1,223,629 + A4249_RS06000 0.63 -0.1
1,223,630 - A4249_RS06000 0.63 -0.2
1,223,630 - A4249_RS06000 0.63 -0.4
1,223,630 - A4249_RS06000 0.63 +0.2
1,223,630 - A4249_RS06000 0.63 -0.6
1,223,630 - A4249_RS06000 0.63 -0.3
1,223,780 + +0.0
1,223,780 + +0.5
1,223,780 + +0.2
1,223,780 + -0.0
1,223,780 + -0.1
1,223,780 + +0.8
1,223,780 + +1.4
1,223,780 + +0.2
1,223,780 + -0.3
1,223,781 - -0.1
1,223,781 - -0.6
1,223,781 - +0.3
1,223,781 - +0.5
1,223,781 - -0.4
1,223,814 + +0.2
1,223,815 - -0.6
1,223,815 - +1.3
1,224,822 + -1.5
1,224,822 + -0.1
1,224,822 + -0.6
1,224,822 + +0.2
1,224,822 + -0.0
1,224,822 + +0.7
1,224,823 - +0.4
1,224,823 - +0.7
1,224,823 - +0.3
1,224,823 - +0.4
1,224,823 - -0.6
1,224,823 - -0.3
1,224,843 - -0.2
1,224,843 - -0.0
1,225,810 - +0.3

Or see this region's nucleotide sequence