Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05945

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05940 and A4249_RS05945 are separated by 134 nucleotidesA4249_RS05945 and A4249_RS05950 overlap by 1 nucleotidesA4249_RS05950 and A4249_RS05955 are separated by 77 nucleotidesA4249_RS05955 and A4249_RS05960 are separated by 59 nucleotidesA4249_RS05960 and A4249_RS05965 are separated by 5 nucleotides A4249_RS05940: A4249_RS05940 - COX15/CtaA family protein, at 1,214,488 to 1,215,588 _RS05940 A4249_RS05945: A4249_RS05945 - hypothetical protein, at 1,215,723 to 1,215,974 _RS05945 A4249_RS05950: A4249_RS05950 - DUF2842 domain-containing protein, at 1,215,974 to 1,216,168 _RS05950 A4249_RS05955: A4249_RS05955 - tRNA-Pro, at 1,216,246 to 1,216,322 _RS05955 A4249_RS05960: A4249_RS05960 - MerR family transcriptional regulator, at 1,216,382 to 1,216,789 _RS05960 A4249_RS05965: A4249_RS05965 - integration host factor subunit alpha, at 1,216,795 to 1,217,103 _RS05965 Position (kb) 1215 1216Strain fitness (log2 ratio) -2 -1 0 1 2at 1214.738 kb on + strand, within A4249_RS05940at 1214.738 kb on + strand, within A4249_RS05940at 1214.738 kb on + strand, within A4249_RS05940at 1214.738 kb on + strand, within A4249_RS05940at 1214.738 kb on + strand, within A4249_RS05940at 1214.738 kb on + strand, within A4249_RS05940at 1214.738 kb on + strand, within A4249_RS05940at 1214.738 kb on + strand, within A4249_RS05940at 1214.738 kb on + strand, within A4249_RS05940at 1214.738 kb on + strand, within A4249_RS05940at 1214.738 kb on + strand, within A4249_RS05940at 1214.738 kb on + strand, within A4249_RS05940at 1214.739 kb on - strand, within A4249_RS05940at 1214.739 kb on - strand, within A4249_RS05940at 1214.739 kb on - strand, within A4249_RS05940at 1214.739 kb on - strand, within A4249_RS05940at 1214.739 kb on - strand, within A4249_RS05940at 1214.739 kb on - strand, within A4249_RS05940at 1214.739 kb on - strand, within A4249_RS05940at 1214.739 kb on - strand, within A4249_RS05940at 1214.739 kb on - strand, within A4249_RS05940at 1214.765 kb on + strand, within A4249_RS05940at 1214.765 kb on + strand, within A4249_RS05940at 1214.766 kb on - strand, within A4249_RS05940at 1214.766 kb on - strand, within A4249_RS05940at 1214.766 kb on - strand, within A4249_RS05940at 1214.880 kb on + strand, within A4249_RS05940at 1214.880 kb on + strand, within A4249_RS05940at 1214.882 kb on + strand, within A4249_RS05940at 1214.882 kb on + strand, within A4249_RS05940at 1214.882 kb on + strand, within A4249_RS05940at 1214.882 kb on + strand, within A4249_RS05940at 1214.882 kb on + strand, within A4249_RS05940at 1214.882 kb on + strand, within A4249_RS05940at 1214.882 kb on + strand, within A4249_RS05940at 1214.882 kb on + strand, within A4249_RS05940at 1214.882 kb on + strand, within A4249_RS05940at 1214.882 kb on + strand, within A4249_RS05940at 1214.882 kb on + strand, within A4249_RS05940at 1214.883 kb on - strand, within A4249_RS05940at 1214.883 kb on - strand, within A4249_RS05940at 1214.883 kb on - strand, within A4249_RS05940at 1214.883 kb on - strand, within A4249_RS05940at 1214.883 kb on - strand, within A4249_RS05940at 1214.883 kb on - strand, within A4249_RS05940at 1215.094 kb on - strand, within A4249_RS05940at 1215.094 kb on - strand, within A4249_RS05940at 1215.215 kb on - strand, within A4249_RS05940at 1215.276 kb on + strand, within A4249_RS05940at 1215.276 kb on + strand, within A4249_RS05940at 1215.276 kb on + strand, within A4249_RS05940at 1215.277 kb on - strand, within A4249_RS05940at 1215.368 kb on + strand, within A4249_RS05940at 1215.368 kb on + strand, within A4249_RS05940at 1215.369 kb on - strand, within A4249_RS05940at 1215.386 kb on + strand, within A4249_RS05940at 1215.387 kb on - strand, within A4249_RS05940at 1215.387 kb on - strand, within A4249_RS05940at 1215.387 kb on - strand, within A4249_RS05940at 1215.421 kb on + strand, within A4249_RS05940at 1215.422 kb on - strand, within A4249_RS05940at 1215.562 kb on - strandat 1215.613 kb on - strandat 1215.654 kb on + strandat 1215.655 kb on - strandat 1215.655 kb on - strandat 1215.655 kb on - strandat 1215.729 kb on + strandat 1215.730 kb on - strandat 1215.730 kb on - strandat 1215.730 kb on - strandat 1216.021 kb on - strand, within A4249_RS05950at 1216.189 kb on + strandat 1216.190 kb on - strandat 1216.383 kb on + strandat 1216.383 kb on + strandat 1216.383 kb on + strandat 1216.384 kb on - strandat 1216.650 kb on + strand, within A4249_RS05960at 1216.651 kb on - strand, within A4249_RS05960

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,214,738 + A4249_RS05940 0.23 +0.9
1,214,738 + A4249_RS05940 0.23 +0.1
1,214,738 + A4249_RS05940 0.23 +0.2
1,214,738 + A4249_RS05940 0.23 +1.1
1,214,738 + A4249_RS05940 0.23 +0.3
1,214,738 + A4249_RS05940 0.23 +0.3
1,214,738 + A4249_RS05940 0.23 +0.3
1,214,738 + A4249_RS05940 0.23 -0.1
1,214,738 + A4249_RS05940 0.23 +0.1
1,214,738 + A4249_RS05940 0.23 +0.2
1,214,738 + A4249_RS05940 0.23 +0.2
1,214,738 + A4249_RS05940 0.23 +0.4
1,214,739 - A4249_RS05940 0.23 +0.2
1,214,739 - A4249_RS05940 0.23 +0.2
1,214,739 - A4249_RS05940 0.23 +0.2
1,214,739 - A4249_RS05940 0.23 -0.4
1,214,739 - A4249_RS05940 0.23 +0.6
1,214,739 - A4249_RS05940 0.23 -1.2
1,214,739 - A4249_RS05940 0.23 -0.4
1,214,739 - A4249_RS05940 0.23 +0.3
1,214,739 - A4249_RS05940 0.23 +0.5
1,214,765 + A4249_RS05940 0.25 -0.1
1,214,765 + A4249_RS05940 0.25 -0.3
1,214,766 - A4249_RS05940 0.25 +0.3
1,214,766 - A4249_RS05940 0.25 -0.1
1,214,766 - A4249_RS05940 0.25 +0.5
1,214,880 + A4249_RS05940 0.36 +0.2
1,214,880 + A4249_RS05940 0.36 -1.1
1,214,882 + A4249_RS05940 0.36 +0.3
1,214,882 + A4249_RS05940 0.36 +0.2
1,214,882 + A4249_RS05940 0.36 -0.6
1,214,882 + A4249_RS05940 0.36 +0.2
1,214,882 + A4249_RS05940 0.36 -0.0
1,214,882 + A4249_RS05940 0.36 -0.3
1,214,882 + A4249_RS05940 0.36 +0.4
1,214,882 + A4249_RS05940 0.36 -0.1
1,214,882 + A4249_RS05940 0.36 +0.6
1,214,882 + A4249_RS05940 0.36 -2.5
1,214,882 + A4249_RS05940 0.36 +0.2
1,214,883 - A4249_RS05940 0.36 +0.6
1,214,883 - A4249_RS05940 0.36 +0.5
1,214,883 - A4249_RS05940 0.36 -0.4
1,214,883 - A4249_RS05940 0.36 +0.0
1,214,883 - A4249_RS05940 0.36 -0.2
1,214,883 - A4249_RS05940 0.36 +0.1
1,215,094 - A4249_RS05940 0.55 -0.6
1,215,094 - A4249_RS05940 0.55 +0.6
1,215,215 - A4249_RS05940 0.66 +0.3
1,215,276 + A4249_RS05940 0.72 -0.0
1,215,276 + A4249_RS05940 0.72 +0.1
1,215,276 + A4249_RS05940 0.72 +0.4
1,215,277 - A4249_RS05940 0.72 +0.3
1,215,368 + A4249_RS05940 0.80 +0.6
1,215,368 + A4249_RS05940 0.80 -0.1
1,215,369 - A4249_RS05940 0.80 +0.9
1,215,386 + A4249_RS05940 0.82 -0.3
1,215,387 - A4249_RS05940 0.82 -0.1
1,215,387 - A4249_RS05940 0.82 +0.1
1,215,387 - A4249_RS05940 0.82 +0.3
1,215,421 + A4249_RS05940 0.85 +0.5
1,215,422 - A4249_RS05940 0.85 +0.1
1,215,562 - +0.2
1,215,613 - +0.2
1,215,654 + -0.1
1,215,655 - +0.8
1,215,655 - +0.4
1,215,655 - -0.0
1,215,729 + +0.3
1,215,730 - +1.8
1,215,730 - +1.3
1,215,730 - +0.3
1,216,021 - A4249_RS05950 0.24 -1.2
1,216,189 + -0.9
1,216,190 - -0.6
1,216,383 + -0.4
1,216,383 + -0.6
1,216,383 + -0.3
1,216,384 - -0.0
1,216,650 + A4249_RS05960 0.66 -0.3
1,216,651 - A4249_RS05960 0.66 -0.1

Or see this region's nucleotide sequence