Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05615

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05610 and A4249_RS05615 are separated by 78 nucleotidesA4249_RS05615 and A4249_RS05620 are separated by 18 nucleotides A4249_RS05610: A4249_RS05610 - deoxyribodipyrimidine photo-lyase, at 1,148,368 to 1,149,825 _RS05610 A4249_RS05615: A4249_RS05615 - 3-deoxy-8-phosphooctulonate synthase, at 1,149,904 to 1,150,815 _RS05615 A4249_RS05620: A4249_RS05620 - D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase, at 1,150,834 to 1,152,288 _RS05620 Position (kb) 1149 1150 1151Strain fitness (log2 ratio) -2 -1 0 1 2at 1148.921 kb on + strand, within A4249_RS05610at 1148.922 kb on - strand, within A4249_RS05610at 1148.922 kb on - strand, within A4249_RS05610at 1149.031 kb on + strand, within A4249_RS05610at 1149.031 kb on + strand, within A4249_RS05610at 1149.031 kb on + strand, within A4249_RS05610at 1149.031 kb on + strand, within A4249_RS05610at 1149.031 kb on + strand, within A4249_RS05610at 1149.031 kb on + strand, within A4249_RS05610at 1149.031 kb on + strand, within A4249_RS05610at 1149.031 kb on + strand, within A4249_RS05610at 1149.031 kb on + strand, within A4249_RS05610at 1149.032 kb on - strand, within A4249_RS05610at 1149.032 kb on - strand, within A4249_RS05610at 1149.032 kb on - strand, within A4249_RS05610at 1149.032 kb on - strand, within A4249_RS05610at 1149.032 kb on - strand, within A4249_RS05610at 1149.161 kb on + strand, within A4249_RS05610at 1149.161 kb on + strand, within A4249_RS05610at 1149.161 kb on + strand, within A4249_RS05610at 1149.181 kb on + strand, within A4249_RS05610at 1149.181 kb on + strand, within A4249_RS05610at 1149.181 kb on + strand, within A4249_RS05610at 1149.181 kb on + strand, within A4249_RS05610at 1149.181 kb on + strand, within A4249_RS05610at 1149.181 kb on + strand, within A4249_RS05610at 1149.181 kb on + strand, within A4249_RS05610at 1149.181 kb on + strand, within A4249_RS05610at 1149.181 kb on + strand, within A4249_RS05610at 1149.181 kb on + strand, within A4249_RS05610at 1149.182 kb on - strand, within A4249_RS05610at 1149.182 kb on - strand, within A4249_RS05610at 1149.182 kb on - strand, within A4249_RS05610at 1149.182 kb on - strand, within A4249_RS05610at 1149.392 kb on + strand, within A4249_RS05610at 1149.392 kb on + strand, within A4249_RS05610at 1149.393 kb on - strand, within A4249_RS05610at 1149.393 kb on - strand, within A4249_RS05610at 1149.393 kb on - strand, within A4249_RS05610at 1149.717 kb on + strandat 1149.717 kb on + strandat 1149.718 kb on - strandat 1149.718 kb on - strandat 1149.719 kb on + strandat 1149.719 kb on + strandat 1149.719 kb on + strandat 1149.719 kb on + strandat 1149.720 kb on - strandat 1149.720 kb on - strandat 1149.720 kb on - strandat 1149.720 kb on - strandat 1149.720 kb on - strandat 1149.843 kb on + strandat 1149.844 kb on - strandat 1149.844 kb on - strandat 1149.885 kb on + strandat 1149.885 kb on + strandat 1149.885 kb on + strandat 1149.885 kb on + strandat 1149.886 kb on - strandat 1149.886 kb on - strandat 1149.886 kb on - strandat 1150.822 kb on + strandat 1150.823 kb on - strandat 1150.823 kb on - strandat 1150.930 kb on + strandat 1150.936 kb on + strandat 1150.936 kb on + strandat 1150.936 kb on + strandat 1150.979 kb on + strandat 1150.980 kb on - strand, within A4249_RS05620at 1151.281 kb on + strand, within A4249_RS05620at 1151.281 kb on + strand, within A4249_RS05620at 1151.643 kb on + strand, within A4249_RS05620at 1151.757 kb on + strand, within A4249_RS05620at 1151.757 kb on + strand, within A4249_RS05620at 1151.757 kb on + strand, within A4249_RS05620

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,148,921 + A4249_RS05610 0.38 +0.4
1,148,922 - A4249_RS05610 0.38 -0.2
1,148,922 - A4249_RS05610 0.38 +0.9
1,149,031 + A4249_RS05610 0.45 -0.3
1,149,031 + A4249_RS05610 0.45 +0.5
1,149,031 + A4249_RS05610 0.45 -0.6
1,149,031 + A4249_RS05610 0.45 +0.2
1,149,031 + A4249_RS05610 0.45 -0.4
1,149,031 + A4249_RS05610 0.45 +0.2
1,149,031 + A4249_RS05610 0.45 +0.7
1,149,031 + A4249_RS05610 0.45 -1.0
1,149,031 + A4249_RS05610 0.45 +1.8
1,149,032 - A4249_RS05610 0.46 -0.1
1,149,032 - A4249_RS05610 0.46 +0.6
1,149,032 - A4249_RS05610 0.46 +0.5
1,149,032 - A4249_RS05610 0.46 +0.3
1,149,032 - A4249_RS05610 0.46 +1.3
1,149,161 + A4249_RS05610 0.54 -0.8
1,149,161 + A4249_RS05610 0.54 +0.2
1,149,161 + A4249_RS05610 0.54 +0.0
1,149,181 + A4249_RS05610 0.56 +0.2
1,149,181 + A4249_RS05610 0.56 -0.0
1,149,181 + A4249_RS05610 0.56 -0.3
1,149,181 + A4249_RS05610 0.56 -0.5
1,149,181 + A4249_RS05610 0.56 +0.2
1,149,181 + A4249_RS05610 0.56 -0.2
1,149,181 + A4249_RS05610 0.56 -0.9
1,149,181 + A4249_RS05610 0.56 +0.1
1,149,181 + A4249_RS05610 0.56 -0.7
1,149,181 + A4249_RS05610 0.56 -0.5
1,149,182 - A4249_RS05610 0.56 -0.3
1,149,182 - A4249_RS05610 0.56 -0.4
1,149,182 - A4249_RS05610 0.56 +0.0
1,149,182 - A4249_RS05610 0.56 -0.6
1,149,392 + A4249_RS05610 0.70 +0.6
1,149,392 + A4249_RS05610 0.70 +0.9
1,149,393 - A4249_RS05610 0.70 -1.9
1,149,393 - A4249_RS05610 0.70 -0.1
1,149,393 - A4249_RS05610 0.70 -1.6
1,149,717 + -0.3
1,149,717 + -0.1
1,149,718 - -0.3
1,149,718 - -0.7
1,149,719 + +1.2
1,149,719 + +0.1
1,149,719 + -1.2
1,149,719 + +1.0
1,149,720 - -0.7
1,149,720 - -0.2
1,149,720 - -0.0
1,149,720 - +0.2
1,149,720 - -0.2
1,149,843 + -0.6
1,149,844 - -0.8
1,149,844 - -1.0
1,149,885 + -0.3
1,149,885 + -0.3
1,149,885 + -0.0
1,149,885 + -0.2
1,149,886 - -0.3
1,149,886 - +0.1
1,149,886 - -0.6
1,150,822 + -0.8
1,150,823 - -0.3
1,150,823 - -1.4
1,150,930 + +0.8
1,150,936 + +1.8
1,150,936 + -0.8
1,150,936 + -0.4
1,150,979 + -0.7
1,150,980 - A4249_RS05620 0.10 +0.2
1,151,281 + A4249_RS05620 0.31 -1.3
1,151,281 + A4249_RS05620 0.31 -1.8
1,151,643 + A4249_RS05620 0.56 -1.5
1,151,757 + A4249_RS05620 0.63 -2.4
1,151,757 + A4249_RS05620 0.63 -1.1
1,151,757 + A4249_RS05620 0.63 -1.0

Or see this region's nucleotide sequence