Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04805

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04800 and A4249_RS04805 overlap by 4 nucleotidesA4249_RS04805 and A4249_RS04810 are separated by 95 nucleotides A4249_RS04800: A4249_RS04800 - fused MFS/spermidine synthase, at 998,375 to 1,000,663 _RS04800 A4249_RS04805: A4249_RS04805 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,000,660 to 1,001,811 _RS04805 A4249_RS04810: A4249_RS04810 - tRNA dihydrouridine synthase DusB, at 1,001,907 to 1,002,962 _RS04810 Position (kb) 1000 1001 1002Strain fitness (log2 ratio) -2 -1 0 1 2at 999.792 kb on + strand, within A4249_RS04800at 999.792 kb on + strand, within A4249_RS04800at 999.792 kb on + strand, within A4249_RS04800at 999.792 kb on + strand, within A4249_RS04800at 999.792 kb on + strand, within A4249_RS04800at 999.792 kb on + strand, within A4249_RS04800at 999.792 kb on + strand, within A4249_RS04800at 999.792 kb on + strand, within A4249_RS04800at 999.792 kb on + strand, within A4249_RS04800at 999.793 kb on - strand, within A4249_RS04800at 999.793 kb on - strand, within A4249_RS04800at 999.793 kb on - strand, within A4249_RS04800at 999.793 kb on - strand, within A4249_RS04800at 999.793 kb on - strand, within A4249_RS04800at 999.793 kb on - strand, within A4249_RS04800at 999.793 kb on - strand, within A4249_RS04800at 999.803 kb on + strand, within A4249_RS04800at 999.821 kb on + strand, within A4249_RS04800at 999.822 kb on - strand, within A4249_RS04800at 999.874 kb on + strand, within A4249_RS04800at 999.912 kb on + strand, within A4249_RS04800at 999.912 kb on + strand, within A4249_RS04800at 999.912 kb on + strand, within A4249_RS04800at 999.913 kb on - strand, within A4249_RS04800at 999.913 kb on - strand, within A4249_RS04800at 999.913 kb on - strand, within A4249_RS04800at 999.913 kb on - strand, within A4249_RS04800at 999.980 kb on + strand, within A4249_RS04800at 999.980 kb on + strand, within A4249_RS04800at 999.980 kb on + strand, within A4249_RS04800at 999.980 kb on + strand, within A4249_RS04800at 999.981 kb on - strand, within A4249_RS04800at 999.981 kb on - strand, within A4249_RS04800at 999.981 kb on - strand, within A4249_RS04800at 999.981 kb on - strand, within A4249_RS04800at 999.981 kb on - strand, within A4249_RS04800at 999.983 kb on + strand, within A4249_RS04800at 999.983 kb on + strand, within A4249_RS04800at 999.983 kb on + strand, within A4249_RS04800at 999.983 kb on + strand, within A4249_RS04800at 999.983 kb on + strand, within A4249_RS04800at 999.984 kb on - strand, within A4249_RS04800at 999.984 kb on - strand, within A4249_RS04800at 999.984 kb on - strand, within A4249_RS04800at 999.984 kb on - strand, within A4249_RS04800at 1000.091 kb on + strand, within A4249_RS04800at 1000.091 kb on + strand, within A4249_RS04800at 1000.091 kb on + strand, within A4249_RS04800at 1000.091 kb on + strand, within A4249_RS04800at 1000.091 kb on + strand, within A4249_RS04800at 1000.091 kb on + strand, within A4249_RS04800at 1000.092 kb on - strand, within A4249_RS04800at 1000.092 kb on - strand, within A4249_RS04800at 1000.092 kb on - strand, within A4249_RS04800at 1000.092 kb on - strand, within A4249_RS04800at 1000.092 kb on - strand, within A4249_RS04800at 1000.259 kb on + strand, within A4249_RS04800at 1000.259 kb on + strand, within A4249_RS04800at 1000.259 kb on + strand, within A4249_RS04800at 1000.260 kb on - strand, within A4249_RS04800at 1000.260 kb on - strand, within A4249_RS04800at 1000.260 kb on - strand, within A4249_RS04800at 1000.260 kb on - strand, within A4249_RS04800at 1000.260 kb on - strand, within A4249_RS04800at 1000.260 kb on - strand, within A4249_RS04800at 1000.338 kb on - strand, within A4249_RS04800at 1000.460 kb on + strandat 1000.460 kb on + strandat 1000.460 kb on + strandat 1000.460 kb on + strandat 1000.460 kb on + strandat 1000.460 kb on + strandat 1000.460 kb on + strandat 1000.460 kb on + strandat 1000.460 kb on + strandat 1000.460 kb on + strandat 1000.460 kb on + strandat 1000.460 kb on + strandat 1000.461 kb on - strandat 1000.461 kb on - strandat 1000.461 kb on - strandat 1000.461 kb on - strandat 1000.461 kb on - strandat 1000.461 kb on - strandat 1000.461 kb on - strandat 1000.461 kb on - strandat 1000.461 kb on - strandat 1000.461 kb on - strandat 1000.461 kb on - strandat 1000.610 kb on + strandat 1000.610 kb on + strandat 1000.610 kb on + strandat 1000.611 kb on - strandat 1000.611 kb on - strandat 1000.662 kb on - strandat 1001.823 kb on + strandat 1001.823 kb on + strandat 1001.823 kb on + strandat 1001.824 kb on - strandat 1001.824 kb on - strandat 1001.824 kb on - strandat 1001.824 kb on - strandat 1001.824 kb on - strandat 1001.902 kb on + strandat 1001.902 kb on + strandat 1001.902 kb on + strandat 1001.903 kb on - strandat 1001.903 kb on - strandat 1001.903 kb on - strandat 1001.903 kb on - strandat 1001.903 kb on - strandat 1001.903 kb on - strandat 1001.903 kb on - strandat 1001.903 kb on - strandat 1002.024 kb on + strand, within A4249_RS04810at 1002.024 kb on + strand, within A4249_RS04810at 1002.024 kb on + strand, within A4249_RS04810at 1002.025 kb on - strand, within A4249_RS04810at 1002.025 kb on - strand, within A4249_RS04810at 1002.025 kb on - strand, within A4249_RS04810at 1002.205 kb on + strand, within A4249_RS04810at 1002.206 kb on - strand, within A4249_RS04810at 1002.206 kb on - strand, within A4249_RS04810at 1002.447 kb on + strand, within A4249_RS04810at 1002.447 kb on + strand, within A4249_RS04810at 1002.447 kb on + strand, within A4249_RS04810at 1002.447 kb on + strand, within A4249_RS04810at 1002.447 kb on + strand, within A4249_RS04810at 1002.447 kb on + strand, within A4249_RS04810at 1002.447 kb on + strand, within A4249_RS04810at 1002.447 kb on + strand, within A4249_RS04810at 1002.447 kb on + strand, within A4249_RS04810at 1002.448 kb on - strand, within A4249_RS04810at 1002.600 kb on + strand, within A4249_RS04810at 1002.601 kb on - strand, within A4249_RS04810at 1002.726 kb on + strand, within A4249_RS04810at 1002.726 kb on + strand, within A4249_RS04810at 1002.727 kb on - strand, within A4249_RS04810at 1002.727 kb on - strand, within A4249_RS04810at 1002.727 kb on - strand, within A4249_RS04810at 1002.774 kb on + strand, within A4249_RS04810at 1002.774 kb on + strand, within A4249_RS04810at 1002.774 kb on + strand, within A4249_RS04810at 1002.775 kb on - strand, within A4249_RS04810at 1002.775 kb on - strand, within A4249_RS04810at 1002.775 kb on - strand, within A4249_RS04810

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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999,792 + A4249_RS04800 0.62 +0.3
999,792 + A4249_RS04800 0.62 +0.9
999,792 + A4249_RS04800 0.62 -0.4
999,792 + A4249_RS04800 0.62 +0.0
999,792 + A4249_RS04800 0.62 +1.4
999,792 + A4249_RS04800 0.62 +0.3
999,792 + A4249_RS04800 0.62 -0.1
999,792 + A4249_RS04800 0.62 +0.7
999,792 + A4249_RS04800 0.62 +0.3
999,793 - A4249_RS04800 0.62 +0.3
999,793 - A4249_RS04800 0.62 +0.5
999,793 - A4249_RS04800 0.62 -0.6
999,793 - A4249_RS04800 0.62 -0.2
999,793 - A4249_RS04800 0.62 +2.6
999,793 - A4249_RS04800 0.62 +0.4
999,793 - A4249_RS04800 0.62 +0.3
999,803 + A4249_RS04800 0.62 +0.7
999,821 + A4249_RS04800 0.63 -0.5
999,822 - A4249_RS04800 0.63 +0.0
999,874 + A4249_RS04800 0.65 -0.9
999,912 + A4249_RS04800 0.67 +0.0
999,912 + A4249_RS04800 0.67 +0.1
999,912 + A4249_RS04800 0.67 -0.6
999,913 - A4249_RS04800 0.67 -0.0
999,913 - A4249_RS04800 0.67 +0.9
999,913 - A4249_RS04800 0.67 +0.4
999,913 - A4249_RS04800 0.67 -0.4
999,980 + A4249_RS04800 0.70 -0.4
999,980 + A4249_RS04800 0.70 +0.5
999,980 + A4249_RS04800 0.70 +0.9
999,980 + A4249_RS04800 0.70 +0.4
999,981 - A4249_RS04800 0.70 -0.2
999,981 - A4249_RS04800 0.70 -0.2
999,981 - A4249_RS04800 0.70 -0.0
999,981 - A4249_RS04800 0.70 +0.8
999,981 - A4249_RS04800 0.70 +0.1
999,983 + A4249_RS04800 0.70 -0.3
999,983 + A4249_RS04800 0.70 -1.1
999,983 + A4249_RS04800 0.70 -1.4
999,983 + A4249_RS04800 0.70 -0.1
999,983 + A4249_RS04800 0.70 -0.5
999,984 - A4249_RS04800 0.70 -0.1
999,984 - A4249_RS04800 0.70 -0.6
999,984 - A4249_RS04800 0.70 -0.0
999,984 - A4249_RS04800 0.70 +0.0
1,000,091 + A4249_RS04800 0.75 +0.1
1,000,091 + A4249_RS04800 0.75 -0.8
1,000,091 + A4249_RS04800 0.75 +0.0
1,000,091 + A4249_RS04800 0.75 -0.5
1,000,091 + A4249_RS04800 0.75 -0.2
1,000,091 + A4249_RS04800 0.75 -0.0
1,000,092 - A4249_RS04800 0.75 +0.1
1,000,092 - A4249_RS04800 0.75 +0.5
1,000,092 - A4249_RS04800 0.75 -1.0
1,000,092 - A4249_RS04800 0.75 +1.0
1,000,092 - A4249_RS04800 0.75 -0.8
1,000,259 + A4249_RS04800 0.82 +0.3
1,000,259 + A4249_RS04800 0.82 +0.2
1,000,259 + A4249_RS04800 0.82 -0.1
1,000,260 - A4249_RS04800 0.82 -0.6
1,000,260 - A4249_RS04800 0.82 -0.6
1,000,260 - A4249_RS04800 0.82 -0.3
1,000,260 - A4249_RS04800 0.82 +0.9
1,000,260 - A4249_RS04800 0.82 -0.1
1,000,260 - A4249_RS04800 0.82 -0.2
1,000,338 - A4249_RS04800 0.86 +0.2
1,000,460 + +0.4
1,000,460 + +0.4
1,000,460 + +1.6
1,000,460 + -0.5
1,000,460 + +0.1
1,000,460 + +1.1
1,000,460 + +1.1
1,000,460 + -1.3
1,000,460 + -2.6
1,000,460 + -0.4
1,000,460 + -0.3
1,000,460 + -0.8
1,000,461 - -0.3
1,000,461 - +0.1
1,000,461 - -0.1
1,000,461 - -0.2
1,000,461 - -1.1
1,000,461 - -0.4
1,000,461 - -0.9
1,000,461 - -1.0
1,000,461 - -0.6
1,000,461 - -0.4
1,000,461 - -0.1
1,000,610 + -0.6
1,000,610 + +0.0
1,000,610 + -1.0
1,000,611 - -0.2
1,000,611 - -0.7
1,000,662 - +0.1
1,001,823 + -0.2
1,001,823 + -0.5
1,001,823 + +0.1
1,001,824 - -1.1
1,001,824 - +0.7
1,001,824 - -0.2
1,001,824 - -0.1
1,001,824 - +0.2
1,001,902 + -0.3
1,001,902 + +0.1
1,001,902 + +0.3
1,001,903 - +0.1
1,001,903 - +1.1
1,001,903 - -0.4
1,001,903 - +0.5
1,001,903 - -0.1
1,001,903 - -0.2
1,001,903 - -0.1
1,001,903 - -0.1
1,002,024 + A4249_RS04810 0.11 -0.1
1,002,024 + A4249_RS04810 0.11 -0.0
1,002,024 + A4249_RS04810 0.11 +0.2
1,002,025 - A4249_RS04810 0.11 -0.1
1,002,025 - A4249_RS04810 0.11 +0.1
1,002,025 - A4249_RS04810 0.11 +1.0
1,002,205 + A4249_RS04810 0.28 +0.0
1,002,206 - A4249_RS04810 0.28 -1.0
1,002,206 - A4249_RS04810 0.28 -0.0
1,002,447 + A4249_RS04810 0.51 -1.5
1,002,447 + A4249_RS04810 0.51 -0.3
1,002,447 + A4249_RS04810 0.51 +0.7
1,002,447 + A4249_RS04810 0.51 +0.9
1,002,447 + A4249_RS04810 0.51 +0.1
1,002,447 + A4249_RS04810 0.51 +0.3
1,002,447 + A4249_RS04810 0.51 -0.2
1,002,447 + A4249_RS04810 0.51 -0.1
1,002,447 + A4249_RS04810 0.51 -0.1
1,002,448 - A4249_RS04810 0.51 -0.6
1,002,600 + A4249_RS04810 0.66 -0.1
1,002,601 - A4249_RS04810 0.66 +0.6
1,002,726 + A4249_RS04810 0.78 -0.1
1,002,726 + A4249_RS04810 0.78 +0.1
1,002,727 - A4249_RS04810 0.78 +0.4
1,002,727 - A4249_RS04810 0.78 -0.9
1,002,727 - A4249_RS04810 0.78 -0.8
1,002,774 + A4249_RS04810 0.82 -0.5
1,002,774 + A4249_RS04810 0.82 +0.6
1,002,774 + A4249_RS04810 0.82 -1.7
1,002,775 - A4249_RS04810 0.82 -0.6
1,002,775 - A4249_RS04810 0.82 +0.3
1,002,775 - A4249_RS04810 0.82 +1.1

Or see this region's nucleotide sequence