Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04515

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04505 and A4249_RS04510 are separated by 87 nucleotidesA4249_RS04510 and A4249_RS04515 are separated by 114 nucleotidesA4249_RS04515 and A4249_RS04520 overlap by 1 nucleotides A4249_RS04505: A4249_RS04505 - peptide chain release factor 2, at 936,948 to 938,070 _RS04505 A4249_RS04510: A4249_RS04510 - polymer-forming cytoskeletal protein, at 938,158 to 938,703 _RS04510 A4249_RS04515: A4249_RS04515 - peroxiredoxin, at 938,818 to 939,282 _RS04515 A4249_RS04520: A4249_RS04520 - tyrosine--tRNA ligase, at 939,282 to 940,535 _RS04520 Position (kb) 938 939 940Strain fitness (log2 ratio) -1 0 1 2at 938.504 kb on + strand, within A4249_RS04510at 938.504 kb on + strand, within A4249_RS04510at 938.504 kb on + strand, within A4249_RS04510at 938.505 kb on - strand, within A4249_RS04510at 938.505 kb on - strand, within A4249_RS04510at 938.682 kb on - strandat 938.682 kb on - strandat 938.744 kb on + strandat 938.745 kb on - strandat 938.745 kb on - strandat 938.747 kb on + strandat 938.747 kb on + strandat 938.747 kb on + strandat 938.748 kb on - strandat 938.763 kb on + strandat 938.763 kb on + strandat 938.763 kb on + strandat 938.764 kb on - strandat 938.939 kb on + strand, within A4249_RS04515at 938.939 kb on + strand, within A4249_RS04515at 938.939 kb on + strand, within A4249_RS04515at 938.939 kb on + strand, within A4249_RS04515at 938.939 kb on + strand, within A4249_RS04515at 938.940 kb on - strand, within A4249_RS04515at 938.940 kb on - strand, within A4249_RS04515at 938.940 kb on - strand, within A4249_RS04515at 938.940 kb on - strand, within A4249_RS04515at 938.940 kb on - strand, within A4249_RS04515at 938.940 kb on - strand, within A4249_RS04515at 938.940 kb on - strand, within A4249_RS04515at 938.940 kb on - strand, within A4249_RS04515at 938.951 kb on + strand, within A4249_RS04515at 938.952 kb on - strand, within A4249_RS04515at 938.952 kb on - strand, within A4249_RS04515at 939.032 kb on + strand, within A4249_RS04515at 939.032 kb on + strand, within A4249_RS04515at 939.032 kb on + strand, within A4249_RS04515at 939.032 kb on + strand, within A4249_RS04515at 939.033 kb on - strand, within A4249_RS04515at 939.033 kb on - strand, within A4249_RS04515at 939.033 kb on - strand, within A4249_RS04515at 939.033 kb on - strand, within A4249_RS04515at 939.082 kb on + strand, within A4249_RS04515at 939.082 kb on + strand, within A4249_RS04515at 939.082 kb on + strand, within A4249_RS04515at 939.083 kb on - strand, within A4249_RS04515at 939.083 kb on - strand, within A4249_RS04515at 939.083 kb on - strand, within A4249_RS04515at 939.083 kb on - strand, within A4249_RS04515at 939.083 kb on - strand, within A4249_RS04515at 939.083 kb on - strand, within A4249_RS04515at 939.173 kb on + strand, within A4249_RS04515at 939.174 kb on - strand, within A4249_RS04515at 939.174 kb on - strand, within A4249_RS04515at 939.179 kb on + strand, within A4249_RS04515at 939.179 kb on + strand, within A4249_RS04515at 939.179 kb on + strand, within A4249_RS04515at 939.179 kb on + strand, within A4249_RS04515at 939.179 kb on + strand, within A4249_RS04515at 939.179 kb on + strand, within A4249_RS04515at 939.179 kb on + strand, within A4249_RS04515at 939.180 kb on - strand, within A4249_RS04515at 939.180 kb on - strand, within A4249_RS04515at 939.180 kb on - strand, within A4249_RS04515

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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938,504 + A4249_RS04510 0.63 -0.0
938,504 + A4249_RS04510 0.63 +0.0
938,504 + A4249_RS04510 0.63 -0.1
938,505 - A4249_RS04510 0.64 -0.1
938,505 - A4249_RS04510 0.64 +0.2
938,682 - -0.1
938,682 - -0.1
938,744 + -0.7
938,745 - -0.5
938,745 - -0.2
938,747 + -0.1
938,747 + -0.4
938,747 + -0.0
938,748 - +1.8
938,763 + -0.2
938,763 + -0.4
938,763 + +0.7
938,764 - +0.0
938,939 + A4249_RS04515 0.26 +0.1
938,939 + A4249_RS04515 0.26 +1.0
938,939 + A4249_RS04515 0.26 -0.1
938,939 + A4249_RS04515 0.26 -0.4
938,939 + A4249_RS04515 0.26 -0.4
938,940 - A4249_RS04515 0.26 +0.2
938,940 - A4249_RS04515 0.26 +0.2
938,940 - A4249_RS04515 0.26 +0.4
938,940 - A4249_RS04515 0.26 +0.0
938,940 - A4249_RS04515 0.26 +0.4
938,940 - A4249_RS04515 0.26 -0.6
938,940 - A4249_RS04515 0.26 +0.2
938,940 - A4249_RS04515 0.26 +0.1
938,951 + A4249_RS04515 0.29 -0.5
938,952 - A4249_RS04515 0.29 +0.2
938,952 - A4249_RS04515 0.29 +0.1
939,032 + A4249_RS04515 0.46 +0.1
939,032 + A4249_RS04515 0.46 -0.7
939,032 + A4249_RS04515 0.46 -0.5
939,032 + A4249_RS04515 0.46 +0.7
939,033 - A4249_RS04515 0.46 +1.0
939,033 - A4249_RS04515 0.46 -0.6
939,033 - A4249_RS04515 0.46 +0.1
939,033 - A4249_RS04515 0.46 +1.2
939,082 + A4249_RS04515 0.57 +0.4
939,082 + A4249_RS04515 0.57 +0.3
939,082 + A4249_RS04515 0.57 -0.3
939,083 - A4249_RS04515 0.57 +0.1
939,083 - A4249_RS04515 0.57 -0.1
939,083 - A4249_RS04515 0.57 -0.5
939,083 - A4249_RS04515 0.57 -1.7
939,083 - A4249_RS04515 0.57 +0.3
939,083 - A4249_RS04515 0.57 -0.1
939,173 + A4249_RS04515 0.76 +0.4
939,174 - A4249_RS04515 0.77 -1.5
939,174 - A4249_RS04515 0.77 -0.2
939,179 + A4249_RS04515 0.78 -1.5
939,179 + A4249_RS04515 0.78 +0.2
939,179 + A4249_RS04515 0.78 -0.2
939,179 + A4249_RS04515 0.78 -0.1
939,179 + A4249_RS04515 0.78 -0.5
939,179 + A4249_RS04515 0.78 +0.7
939,179 + A4249_RS04515 0.78 -0.4
939,180 - A4249_RS04515 0.78 -0.4
939,180 - A4249_RS04515 0.78 +0.9
939,180 - A4249_RS04515 0.78 +0.0

Or see this region's nucleotide sequence