Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04175

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04165 and A4249_RS17025 are separated by 3 nucleotidesA4249_RS17025 and A4249_RS04170 overlap by 4 nucleotidesA4249_RS04170 and A4249_RS04175 overlap by 4 nucleotidesA4249_RS04175 and A4249_RS04180 overlap by 1 nucleotidesA4249_RS04180 and A4249_RS04185 overlap by 4 nucleotides A4249_RS04165: A4249_RS04165 - site-specific tyrosine recombinase XerD, at 864,478 to 865,398 _RS04165 A4249_RS17025: A4249_RS17025 - hypothetical protein, at 865,402 to 865,527 _RS17025 A4249_RS04170: A4249_RS04170 - shikimate kinase, at 865,524 to 866,090 _RS04170 A4249_RS04175: A4249_RS04175 - 3-dehydroquinate synthase, at 866,087 to 867,193 _RS04175 A4249_RS04180: A4249_RS04180 - GNAT family protein, at 867,193 to 867,780 _RS04180 A4249_RS04185: A4249_RS04185 - nitronate monooxygenase, at 867,777 to 868,823 _RS04185 Position (kb) 866 867 868Strain fitness (log2 ratio) -2 -1 0 1at 865.164 kb on - strand, within A4249_RS04165at 865.164 kb on - strand, within A4249_RS04165at 865.164 kb on - strand, within A4249_RS04165at 865.336 kb on - strandat 865.336 kb on - strandat 865.336 kb on - strandat 865.445 kb on + strand, within A4249_RS17025at 865.561 kb on + strandat 865.561 kb on + strandat 867.325 kb on + strand, within A4249_RS04180at 867.326 kb on - strand, within A4249_RS04180at 867.326 kb on - strand, within A4249_RS04180at 867.326 kb on - strand, within A4249_RS04180at 867.326 kb on - strand, within A4249_RS04180at 867.326 kb on - strand, within A4249_RS04180at 867.326 kb on - strand, within A4249_RS04180at 867.326 kb on - strand, within A4249_RS04180at 867.326 kb on - strand, within A4249_RS04180at 867.381 kb on + strand, within A4249_RS04180at 867.394 kb on + strand, within A4249_RS04180at 867.395 kb on - strand, within A4249_RS04180at 867.445 kb on + strand, within A4249_RS04180at 867.445 kb on + strand, within A4249_RS04180at 867.445 kb on + strand, within A4249_RS04180at 867.445 kb on + strand, within A4249_RS04180at 867.445 kb on + strand, within A4249_RS04180at 867.446 kb on - strand, within A4249_RS04180at 867.446 kb on - strand, within A4249_RS04180at 867.446 kb on - strand, within A4249_RS04180at 867.446 kb on - strand, within A4249_RS04180at 867.493 kb on + strand, within A4249_RS04180at 867.493 kb on + strand, within A4249_RS04180at 867.493 kb on + strand, within A4249_RS04180at 867.494 kb on - strand, within A4249_RS04180at 867.494 kb on - strand, within A4249_RS04180at 867.635 kb on + strand, within A4249_RS04180at 867.635 kb on + strand, within A4249_RS04180at 867.635 kb on + strand, within A4249_RS04180at 867.636 kb on - strand, within A4249_RS04180at 867.636 kb on - strand, within A4249_RS04180at 867.779 kb on - strandat 867.779 kb on - strandat 867.925 kb on + strand, within A4249_RS04185at 867.925 kb on + strand, within A4249_RS04185at 867.925 kb on + strand, within A4249_RS04185at 867.925 kb on + strand, within A4249_RS04185at 867.926 kb on - strand, within A4249_RS04185at 867.926 kb on - strand, within A4249_RS04185at 867.926 kb on - strand, within A4249_RS04185at 867.926 kb on - strand, within A4249_RS04185at 867.926 kb on - strand, within A4249_RS04185at 867.926 kb on - strand, within A4249_RS04185

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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865,164 - A4249_RS04165 0.74 -0.0
865,164 - A4249_RS04165 0.74 +1.5
865,164 - A4249_RS04165 0.74 -0.4
865,336 - -0.8
865,336 - -0.4
865,336 - -2.1
865,445 + A4249_RS17025 0.34 -1.8
865,561 + +1.0
865,561 + +0.6
867,325 + A4249_RS04180 0.22 -0.3
867,326 - A4249_RS04180 0.23 -0.1
867,326 - A4249_RS04180 0.23 -0.2
867,326 - A4249_RS04180 0.23 +0.2
867,326 - A4249_RS04180 0.23 -0.6
867,326 - A4249_RS04180 0.23 +0.1
867,326 - A4249_RS04180 0.23 -0.7
867,326 - A4249_RS04180 0.23 +0.7
867,326 - A4249_RS04180 0.23 -0.4
867,381 + A4249_RS04180 0.32 -0.3
867,394 + A4249_RS04180 0.34 -0.3
867,395 - A4249_RS04180 0.34 +0.4
867,445 + A4249_RS04180 0.43 +1.2
867,445 + A4249_RS04180 0.43 -0.3
867,445 + A4249_RS04180 0.43 -0.2
867,445 + A4249_RS04180 0.43 -0.5
867,445 + A4249_RS04180 0.43 -0.4
867,446 - A4249_RS04180 0.43 +0.6
867,446 - A4249_RS04180 0.43 +0.0
867,446 - A4249_RS04180 0.43 +0.5
867,446 - A4249_RS04180 0.43 -0.3
867,493 + A4249_RS04180 0.51 -0.8
867,493 + A4249_RS04180 0.51 -0.9
867,493 + A4249_RS04180 0.51 -0.9
867,494 - A4249_RS04180 0.51 +0.1
867,494 - A4249_RS04180 0.51 +0.3
867,635 + A4249_RS04180 0.75 +0.0
867,635 + A4249_RS04180 0.75 -0.4
867,635 + A4249_RS04180 0.75 +0.4
867,636 - A4249_RS04180 0.75 -0.6
867,636 - A4249_RS04180 0.75 +1.0
867,779 - +0.7
867,779 - +0.1
867,925 + A4249_RS04185 0.14 +0.1
867,925 + A4249_RS04185 0.14 -0.0
867,925 + A4249_RS04185 0.14 -0.1
867,925 + A4249_RS04185 0.14 -0.1
867,926 - A4249_RS04185 0.14 -0.3
867,926 - A4249_RS04185 0.14 +0.3
867,926 - A4249_RS04185 0.14 -0.6
867,926 - A4249_RS04185 0.14 +0.0
867,926 - A4249_RS04185 0.14 -0.9
867,926 - A4249_RS04185 0.14 -0.2

Or see this region's nucleotide sequence