Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS03420

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS03410 and A4249_RS03415 are separated by 66 nucleotidesA4249_RS03415 and A4249_RS03420 are separated by 185 nucleotidesA4249_RS03420 and A4249_RS03425 are separated by 21 nucleotides A4249_RS03410: A4249_RS03410 - tyrosine-type recombinase/integrase, at 715,376 to 716,002 _RS03410 A4249_RS03415: A4249_RS03415 - TetR/AcrR family transcriptional regulator, at 716,069 to 716,638 _RS03415 A4249_RS03420: A4249_RS03420 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 716,824 to 717,408 _RS03420 A4249_RS03425: A4249_RS03425 - hypothetical protein, at 717,430 to 718,635 _RS03425 Position (kb) 716 717 718Strain fitness (log2 ratio) -2 -1 0 1at 715.875 kb on - strand, within A4249_RS03410at 715.875 kb on - strand, within A4249_RS03410at 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.941 kb on + strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.942 kb on - strandat 715.946 kb on + strandat 715.946 kb on + strandat 715.946 kb on + strandat 715.946 kb on + strandat 715.947 kb on - strandat 715.947 kb on - strandat 716.124 kb on - strandat 716.124 kb on - strandat 716.155 kb on + strand, within A4249_RS03415at 716.155 kb on + strand, within A4249_RS03415at 716.155 kb on + strand, within A4249_RS03415at 716.155 kb on + strand, within A4249_RS03415at 716.156 kb on - strand, within A4249_RS03415at 716.156 kb on - strand, within A4249_RS03415at 716.156 kb on - strand, within A4249_RS03415at 716.156 kb on - strand, within A4249_RS03415at 716.156 kb on - strand, within A4249_RS03415at 716.156 kb on - strand, within A4249_RS03415at 716.183 kb on - strand, within A4249_RS03415at 716.200 kb on + strand, within A4249_RS03415at 716.200 kb on + strand, within A4249_RS03415at 716.201 kb on - strand, within A4249_RS03415at 716.302 kb on + strand, within A4249_RS03415at 716.302 kb on + strand, within A4249_RS03415at 716.303 kb on - strand, within A4249_RS03415at 716.484 kb on + strand, within A4249_RS03415at 716.484 kb on + strand, within A4249_RS03415at 716.485 kb on - strand, within A4249_RS03415at 716.485 kb on - strand, within A4249_RS03415at 716.527 kb on + strand, within A4249_RS03415at 716.527 kb on + strand, within A4249_RS03415at 716.527 kb on + strand, within A4249_RS03415at 716.528 kb on - strand, within A4249_RS03415at 716.602 kb on + strandat 716.638 kb on + strandat 716.638 kb on + strandat 716.638 kb on + strandat 716.638 kb on + strandat 716.639 kb on - strandat 716.639 kb on - strandat 716.639 kb on - strandat 716.639 kb on - strandat 716.639 kb on - strandat 716.647 kb on + strandat 716.647 kb on + strandat 716.647 kb on + strandat 716.647 kb on + strandat 716.647 kb on + strandat 716.647 kb on + strandat 716.647 kb on + strandat 716.647 kb on + strandat 716.647 kb on + strandat 716.647 kb on + strandat 716.647 kb on + strandat 716.648 kb on - strandat 716.648 kb on - strandat 716.648 kb on - strandat 716.648 kb on - strandat 716.648 kb on - strandat 716.648 kb on - strandat 716.648 kb on - strandat 716.648 kb on - strandat 716.648 kb on - strandat 716.648 kb on - strandat 716.663 kb on + strandat 716.663 kb on + strandat 716.663 kb on + strandat 716.663 kb on + strandat 716.663 kb on + strandat 716.663 kb on + strandat 716.663 kb on + strandat 716.663 kb on + strandat 716.663 kb on + strandat 716.663 kb on + strandat 716.664 kb on - strandat 716.664 kb on - strandat 716.664 kb on - strandat 716.664 kb on - strandat 716.664 kb on - strandat 716.664 kb on - strandat 716.664 kb on - strandat 716.664 kb on - strandat 716.664 kb on - strandat 716.667 kb on + strandat 716.667 kb on + strandat 716.667 kb on + strandat 716.667 kb on + strandat 716.667 kb on + strandat 716.667 kb on + strandat 716.667 kb on + strandat 716.667 kb on + strandat 716.667 kb on + strandat 716.668 kb on - strandat 716.668 kb on - strandat 716.668 kb on - strandat 716.668 kb on - strandat 716.668 kb on - strandat 716.668 kb on - strandat 716.668 kb on - strandat 716.668 kb on - strandat 716.825 kb on + strandat 716.825 kb on + strandat 716.918 kb on + strand, within A4249_RS03420at 716.918 kb on + strand, within A4249_RS03420at 716.918 kb on + strand, within A4249_RS03420at 716.919 kb on - strand, within A4249_RS03420at 716.919 kb on - strand, within A4249_RS03420at 716.919 kb on - strand, within A4249_RS03420at 716.919 kb on - strand, within A4249_RS03420at 717.029 kb on + strand, within A4249_RS03420at 717.029 kb on + strand, within A4249_RS03420at 717.030 kb on - strand, within A4249_RS03420at 717.030 kb on - strand, within A4249_RS03420at 717.045 kb on + strand, within A4249_RS03420at 717.046 kb on - strand, within A4249_RS03420at 717.046 kb on - strand, within A4249_RS03420at 717.074 kb on + strand, within A4249_RS03420at 717.075 kb on - strand, within A4249_RS03420at 717.075 kb on - strand, within A4249_RS03420at 717.332 kb on + strand, within A4249_RS03420at 717.333 kb on - strand, within A4249_RS03420at 717.333 kb on - strand, within A4249_RS03420at 717.461 kb on + strandat 717.674 kb on + strand, within A4249_RS03425at 717.674 kb on + strand, within A4249_RS03425at 717.674 kb on + strand, within A4249_RS03425at 717.674 kb on + strand, within A4249_RS03425at 717.674 kb on + strand, within A4249_RS03425at 717.675 kb on - strand, within A4249_RS03425at 718.130 kb on + strand, within A4249_RS03425at 718.130 kb on + strand, within A4249_RS03425at 718.130 kb on + strand, within A4249_RS03425at 718.131 kb on - strand, within A4249_RS03425at 718.131 kb on - strand, within A4249_RS03425at 718.131 kb on - strand, within A4249_RS03425at 718.131 kb on - strand, within A4249_RS03425at 718.131 kb on - strand, within A4249_RS03425at 718.131 kb on - strand, within A4249_RS03425

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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715,875 - A4249_RS03410 0.80 -0.3
715,875 - A4249_RS03410 0.80 +0.3
715,941 + +0.2
715,941 + -0.3
715,941 + -0.4
715,941 + +0.1
715,941 + +0.1
715,941 + +0.1
715,941 + +1.3
715,941 + -0.2
715,942 - -0.2
715,942 - -1.2
715,942 - -1.5
715,942 - -0.2
715,942 - +0.1
715,942 - -1.0
715,942 - -0.8
715,946 + +0.9
715,946 + +0.1
715,946 + -0.5
715,946 + +0.7
715,947 - +1.3
715,947 - +0.7
716,124 - +0.5
716,124 - -0.2
716,155 + A4249_RS03415 0.15 +0.5
716,155 + A4249_RS03415 0.15 +1.0
716,155 + A4249_RS03415 0.15 +0.4
716,155 + A4249_RS03415 0.15 +0.1
716,156 - A4249_RS03415 0.15 -0.1
716,156 - A4249_RS03415 0.15 -1.3
716,156 - A4249_RS03415 0.15 -0.6
716,156 - A4249_RS03415 0.15 +1.3
716,156 - A4249_RS03415 0.15 +0.9
716,156 - A4249_RS03415 0.15 +0.2
716,183 - A4249_RS03415 0.20 +0.6
716,200 + A4249_RS03415 0.23 +0.1
716,200 + A4249_RS03415 0.23 +0.0
716,201 - A4249_RS03415 0.23 +0.1
716,302 + A4249_RS03415 0.41 +1.3
716,302 + A4249_RS03415 0.41 +0.2
716,303 - A4249_RS03415 0.41 -0.5
716,484 + A4249_RS03415 0.73 +0.2
716,484 + A4249_RS03415 0.73 -0.1
716,485 - A4249_RS03415 0.73 -0.5
716,485 - A4249_RS03415 0.73 -0.1
716,527 + A4249_RS03415 0.80 -0.3
716,527 + A4249_RS03415 0.80 -0.3
716,527 + A4249_RS03415 0.80 +0.3
716,528 - A4249_RS03415 0.81 -0.7
716,602 + -0.3
716,638 + +0.0
716,638 + -0.2
716,638 + +0.1
716,638 + -0.1
716,639 - +0.3
716,639 - -0.0
716,639 - +0.2
716,639 - +0.2
716,639 - +1.6
716,647 + -0.2
716,647 + -0.8
716,647 + -0.1
716,647 + -0.7
716,647 + -0.2
716,647 + -0.2
716,647 + +1.3
716,647 + -0.4
716,647 + +0.5
716,647 + -0.4
716,647 + -1.3
716,648 - -0.2
716,648 - +0.2
716,648 - +0.1
716,648 - -0.5
716,648 - -0.6
716,648 - -0.3
716,648 - +0.9
716,648 - +0.1
716,648 - +1.2
716,648 - -1.0
716,663 + -0.6
716,663 + +0.1
716,663 + +0.7
716,663 + +0.6
716,663 + -0.4
716,663 + -1.3
716,663 + -0.2
716,663 + -0.8
716,663 + -0.4
716,663 + +0.2
716,664 - +0.8
716,664 - +0.1
716,664 - +0.2
716,664 - -0.0
716,664 - +0.2
716,664 - -0.3
716,664 - -0.1
716,664 - -0.5
716,664 - +1.1
716,667 + -0.5
716,667 + -0.1
716,667 + -0.1
716,667 + -0.1
716,667 + -1.2
716,667 + -0.7
716,667 + +0.3
716,667 + -0.3
716,667 + +1.0
716,668 - -0.3
716,668 - -0.2
716,668 - +0.8
716,668 - +0.0
716,668 - +0.6
716,668 - -0.3
716,668 - -2.3
716,668 - -0.1
716,825 + +0.3
716,825 + +0.2
716,918 + A4249_RS03420 0.16 +0.2
716,918 + A4249_RS03420 0.16 -0.8
716,918 + A4249_RS03420 0.16 -2.4
716,919 - A4249_RS03420 0.16 -0.6
716,919 - A4249_RS03420 0.16 -0.6
716,919 - A4249_RS03420 0.16 -0.8
716,919 - A4249_RS03420 0.16 -0.3
717,029 + A4249_RS03420 0.35 -1.4
717,029 + A4249_RS03420 0.35 +0.8
717,030 - A4249_RS03420 0.35 -0.8
717,030 - A4249_RS03420 0.35 -2.2
717,045 + A4249_RS03420 0.38 +0.8
717,046 - A4249_RS03420 0.38 +0.3
717,046 - A4249_RS03420 0.38 -0.4
717,074 + A4249_RS03420 0.43 +0.5
717,075 - A4249_RS03420 0.43 -0.5
717,075 - A4249_RS03420 0.43 -0.1
717,332 + A4249_RS03420 0.87 -0.1
717,333 - A4249_RS03420 0.87 +0.2
717,333 - A4249_RS03420 0.87 +0.0
717,461 + +0.5
717,674 + A4249_RS03425 0.20 -0.7
717,674 + A4249_RS03425 0.20 -0.1
717,674 + A4249_RS03425 0.20 +0.5
717,674 + A4249_RS03425 0.20 +0.3
717,674 + A4249_RS03425 0.20 -0.0
717,675 - A4249_RS03425 0.20 -0.1
718,130 + A4249_RS03425 0.58 -0.9
718,130 + A4249_RS03425 0.58 -0.4
718,130 + A4249_RS03425 0.58 +0.6
718,131 - A4249_RS03425 0.58 -1.0
718,131 - A4249_RS03425 0.58 -0.7
718,131 - A4249_RS03425 0.58 -0.8
718,131 - A4249_RS03425 0.58 -0.3
718,131 - A4249_RS03425 0.58 -2.0
718,131 - A4249_RS03425 0.58 -0.2

Or see this region's nucleotide sequence