Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02935

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02925 and A4249_RS02930 are separated by 1 nucleotidesA4249_RS02930 and A4249_RS02935 are separated by 66 nucleotidesA4249_RS02935 and A4249_RS02940 are separated by 19 nucleotides A4249_RS02925: A4249_RS02925 - squalene/phytoene synthase family protein, at 621,447 to 622,082 _RS02925 A4249_RS02930: A4249_RS02930 - MarR family transcriptional regulator, at 622,084 to 622,575 _RS02930 A4249_RS02935: A4249_RS02935 - MFS transporter, at 622,642 to 623,847 _RS02935 A4249_RS02940: A4249_RS02940 - methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO, at 623,867 to 625,261 _RS02940 Position (kb) 622 623 624Strain fitness (log2 ratio) -3 -2 -1 0 1at 621.813 kb on + strand, within A4249_RS02925at 621.813 kb on + strand, within A4249_RS02925at 621.813 kb on + strand, within A4249_RS02925at 621.813 kb on + strand, within A4249_RS02925at 621.813 kb on + strand, within A4249_RS02925at 621.814 kb on - strand, within A4249_RS02925at 621.814 kb on - strand, within A4249_RS02925at 621.814 kb on - strand, within A4249_RS02925at 621.970 kb on + strand, within A4249_RS02925at 622.086 kb on - strandat 622.430 kb on + strand, within A4249_RS02930at 622.430 kb on + strand, within A4249_RS02930at 622.430 kb on + strand, within A4249_RS02930at 622.431 kb on - strand, within A4249_RS02930at 622.431 kb on - strand, within A4249_RS02930at 622.431 kb on - strand, within A4249_RS02930at 622.431 kb on - strand, within A4249_RS02930at 622.431 kb on - strand, within A4249_RS02930at 622.595 kb on + strandat 622.613 kb on + strandat 622.614 kb on - strandat 622.983 kb on - strand, within A4249_RS02935at 623.071 kb on + strand, within A4249_RS02935at 623.071 kb on + strand, within A4249_RS02935at 623.071 kb on + strand, within A4249_RS02935at 623.071 kb on + strand, within A4249_RS02935at 623.071 kb on + strand, within A4249_RS02935at 623.071 kb on + strand, within A4249_RS02935at 623.072 kb on - strand, within A4249_RS02935at 623.072 kb on - strand, within A4249_RS02935at 623.072 kb on - strand, within A4249_RS02935at 623.072 kb on - strand, within A4249_RS02935at 623.072 kb on - strand, within A4249_RS02935at 623.072 kb on - strand, within A4249_RS02935at 623.338 kb on + strand, within A4249_RS02935at 623.339 kb on - strand, within A4249_RS02935at 623.339 kb on - strand, within A4249_RS02935at 623.340 kb on + strand, within A4249_RS02935at 623.340 kb on + strand, within A4249_RS02935at 623.340 kb on + strand, within A4249_RS02935at 623.340 kb on + strand, within A4249_RS02935at 623.340 kb on + strand, within A4249_RS02935at 623.340 kb on + strand, within A4249_RS02935at 623.340 kb on + strand, within A4249_RS02935at 623.340 kb on + strand, within A4249_RS02935at 623.340 kb on + strand, within A4249_RS02935at 623.340 kb on + strand, within A4249_RS02935at 623.340 kb on + strand, within A4249_RS02935at 623.341 kb on - strand, within A4249_RS02935at 623.341 kb on - strand, within A4249_RS02935at 623.341 kb on - strand, within A4249_RS02935at 623.341 kb on - strand, within A4249_RS02935at 623.341 kb on - strand, within A4249_RS02935at 623.341 kb on - strand, within A4249_RS02935at 623.341 kb on - strand, within A4249_RS02935at 623.341 kb on - strand, within A4249_RS02935at 623.341 kb on - strand, within A4249_RS02935at 623.341 kb on - strand, within A4249_RS02935at 623.341 kb on - strand, within A4249_RS02935at 623.341 kb on - strand, within A4249_RS02935at 623.371 kb on + strand, within A4249_RS02935at 623.371 kb on + strand, within A4249_RS02935at 623.371 kb on + strand, within A4249_RS02935at 623.371 kb on + strand, within A4249_RS02935at 623.371 kb on + strand, within A4249_RS02935at 623.371 kb on + strand, within A4249_RS02935at 623.372 kb on - strand, within A4249_RS02935at 623.372 kb on - strand, within A4249_RS02935at 623.372 kb on - strand, within A4249_RS02935at 623.372 kb on - strand, within A4249_RS02935at 623.372 kb on - strand, within A4249_RS02935at 623.372 kb on - strand, within A4249_RS02935at 623.372 kb on - strand, within A4249_RS02935at 623.695 kb on + strand, within A4249_RS02935at 623.695 kb on + strand, within A4249_RS02935at 623.696 kb on - strand, within A4249_RS02935at 623.696 kb on - strand, within A4249_RS02935at 623.696 kb on - strand, within A4249_RS02935at 623.696 kb on - strand, within A4249_RS02935at 623.696 kb on - strand, within A4249_RS02935at 623.696 kb on - strand, within A4249_RS02935at 624.009 kb on + strand, within A4249_RS02940at 624.009 kb on + strand, within A4249_RS02940at 624.009 kb on + strand, within A4249_RS02940at 624.009 kb on + strand, within A4249_RS02940at 624.009 kb on + strand, within A4249_RS02940at 624.009 kb on + strand, within A4249_RS02940at 624.009 kb on + strand, within A4249_RS02940at 624.009 kb on + strand, within A4249_RS02940at 624.009 kb on + strand, within A4249_RS02940at 624.010 kb on - strand, within A4249_RS02940at 624.010 kb on - strand, within A4249_RS02940at 624.010 kb on - strand, within A4249_RS02940at 624.010 kb on - strand, within A4249_RS02940at 624.010 kb on - strand, within A4249_RS02940at 624.010 kb on - strand, within A4249_RS02940at 624.010 kb on - strand, within A4249_RS02940at 624.010 kb on - strand, within A4249_RS02940at 624.010 kb on - strand, within A4249_RS02940at 624.177 kb on + strand, within A4249_RS02940at 624.177 kb on + strand, within A4249_RS02940at 624.177 kb on + strand, within A4249_RS02940at 624.177 kb on + strand, within A4249_RS02940at 624.177 kb on + strand, within A4249_RS02940at 624.178 kb on - strand, within A4249_RS02940at 624.178 kb on - strand, within A4249_RS02940at 624.270 kb on + strand, within A4249_RS02940at 624.270 kb on + strand, within A4249_RS02940at 624.270 kb on + strand, within A4249_RS02940at 624.270 kb on + strand, within A4249_RS02940at 624.270 kb on + strand, within A4249_RS02940at 624.271 kb on - strand, within A4249_RS02940at 624.271 kb on - strand, within A4249_RS02940at 624.271 kb on - strand, within A4249_RS02940at 624.271 kb on - strand, within A4249_RS02940at 624.326 kb on + strand, within A4249_RS02940at 624.326 kb on + strand, within A4249_RS02940at 624.435 kb on + strand, within A4249_RS02940at 624.552 kb on + strand, within A4249_RS02940at 624.552 kb on + strand, within A4249_RS02940at 624.552 kb on + strand, within A4249_RS02940at 624.621 kb on + strand, within A4249_RS02940at 624.621 kb on + strand, within A4249_RS02940at 624.622 kb on - strand, within A4249_RS02940at 624.622 kb on - strand, within A4249_RS02940at 624.622 kb on - strand, within A4249_RS02940at 624.651 kb on + strand, within A4249_RS02940at 624.651 kb on + strand, within A4249_RS02940at 624.651 kb on + strand, within A4249_RS02940at 624.652 kb on - strand, within A4249_RS02940at 624.688 kb on - strand, within A4249_RS02940at 624.688 kb on - strand, within A4249_RS02940at 624.688 kb on - strand, within A4249_RS02940

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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621,813 + A4249_RS02925 0.58 -0.4
621,813 + A4249_RS02925 0.58 +0.1
621,813 + A4249_RS02925 0.58 +0.7
621,813 + A4249_RS02925 0.58 -1.5
621,813 + A4249_RS02925 0.58 -0.6
621,814 - A4249_RS02925 0.58 -0.7
621,814 - A4249_RS02925 0.58 -2.0
621,814 - A4249_RS02925 0.58 -0.1
621,970 + A4249_RS02925 0.82 +0.2
622,086 - +0.6
622,430 + A4249_RS02930 0.70 +0.3
622,430 + A4249_RS02930 0.70 +1.2
622,430 + A4249_RS02930 0.70 +0.0
622,431 - A4249_RS02930 0.71 +0.3
622,431 - A4249_RS02930 0.71 +0.7
622,431 - A4249_RS02930 0.71 +1.2
622,431 - A4249_RS02930 0.71 +0.7
622,431 - A4249_RS02930 0.71 +0.4
622,595 + +0.5
622,613 + -0.1
622,614 - -0.6
622,983 - A4249_RS02935 0.28 +0.2
623,071 + A4249_RS02935 0.36 -0.1
623,071 + A4249_RS02935 0.36 -0.7
623,071 + A4249_RS02935 0.36 +0.2
623,071 + A4249_RS02935 0.36 -0.3
623,071 + A4249_RS02935 0.36 -1.3
623,071 + A4249_RS02935 0.36 -0.6
623,072 - A4249_RS02935 0.36 -1.0
623,072 - A4249_RS02935 0.36 -0.4
623,072 - A4249_RS02935 0.36 -0.4
623,072 - A4249_RS02935 0.36 -0.0
623,072 - A4249_RS02935 0.36 +0.2
623,072 - A4249_RS02935 0.36 -0.7
623,338 + A4249_RS02935 0.58 -0.1
623,339 - A4249_RS02935 0.58 -0.7
623,339 - A4249_RS02935 0.58 -0.2
623,340 + A4249_RS02935 0.58 -3.2
623,340 + A4249_RS02935 0.58 -0.5
623,340 + A4249_RS02935 0.58 -1.5
623,340 + A4249_RS02935 0.58 -0.7
623,340 + A4249_RS02935 0.58 -1.8
623,340 + A4249_RS02935 0.58 -0.2
623,340 + A4249_RS02935 0.58 +1.1
623,340 + A4249_RS02935 0.58 -0.5
623,340 + A4249_RS02935 0.58 -0.2
623,340 + A4249_RS02935 0.58 -0.5
623,340 + A4249_RS02935 0.58 -0.3
623,341 - A4249_RS02935 0.58 -0.4
623,341 - A4249_RS02935 0.58 -1.0
623,341 - A4249_RS02935 0.58 +0.2
623,341 - A4249_RS02935 0.58 +0.7
623,341 - A4249_RS02935 0.58 -0.3
623,341 - A4249_RS02935 0.58 -1.0
623,341 - A4249_RS02935 0.58 -1.6
623,341 - A4249_RS02935 0.58 -0.5
623,341 - A4249_RS02935 0.58 +1.3
623,341 - A4249_RS02935 0.58 +0.5
623,341 - A4249_RS02935 0.58 -1.2
623,341 - A4249_RS02935 0.58 -0.3
623,371 + A4249_RS02935 0.60 -0.1
623,371 + A4249_RS02935 0.60 -0.2
623,371 + A4249_RS02935 0.60 -0.0
623,371 + A4249_RS02935 0.60 -0.3
623,371 + A4249_RS02935 0.60 -0.8
623,371 + A4249_RS02935 0.60 -0.3
623,372 - A4249_RS02935 0.61 -1.0
623,372 - A4249_RS02935 0.61 +0.9
623,372 - A4249_RS02935 0.61 -0.0
623,372 - A4249_RS02935 0.61 -0.2
623,372 - A4249_RS02935 0.61 -0.4
623,372 - A4249_RS02935 0.61 -0.1
623,372 - A4249_RS02935 0.61 -0.0
623,695 + A4249_RS02935 0.87 -1.3
623,695 + A4249_RS02935 0.87 -0.4
623,696 - A4249_RS02935 0.87 -0.8
623,696 - A4249_RS02935 0.87 -0.8
623,696 - A4249_RS02935 0.87 -0.5
623,696 - A4249_RS02935 0.87 +0.1
623,696 - A4249_RS02935 0.87 -0.3
623,696 - A4249_RS02935 0.87 -0.3
624,009 + A4249_RS02940 0.10 +0.5
624,009 + A4249_RS02940 0.10 +0.2
624,009 + A4249_RS02940 0.10 +0.2
624,009 + A4249_RS02940 0.10 -0.3
624,009 + A4249_RS02940 0.10 -0.8
624,009 + A4249_RS02940 0.10 +0.2
624,009 + A4249_RS02940 0.10 +0.1
624,009 + A4249_RS02940 0.10 -0.3
624,009 + A4249_RS02940 0.10 -0.4
624,010 - A4249_RS02940 0.10 -0.4
624,010 - A4249_RS02940 0.10 +0.6
624,010 - A4249_RS02940 0.10 -0.1
624,010 - A4249_RS02940 0.10 +0.1
624,010 - A4249_RS02940 0.10 +0.6
624,010 - A4249_RS02940 0.10 +0.4
624,010 - A4249_RS02940 0.10 -0.2
624,010 - A4249_RS02940 0.10 +0.3
624,010 - A4249_RS02940 0.10 +0.3
624,177 + A4249_RS02940 0.22 +0.4
624,177 + A4249_RS02940 0.22 -0.5
624,177 + A4249_RS02940 0.22 +0.4
624,177 + A4249_RS02940 0.22 -0.2
624,177 + A4249_RS02940 0.22 -1.0
624,178 - A4249_RS02940 0.22 -0.0
624,178 - A4249_RS02940 0.22 -1.0
624,270 + A4249_RS02940 0.29 -0.3
624,270 + A4249_RS02940 0.29 -0.9
624,270 + A4249_RS02940 0.29 +0.3
624,270 + A4249_RS02940 0.29 -0.0
624,270 + A4249_RS02940 0.29 +1.6
624,271 - A4249_RS02940 0.29 -1.7
624,271 - A4249_RS02940 0.29 +0.7
624,271 - A4249_RS02940 0.29 +0.3
624,271 - A4249_RS02940 0.29 +0.1
624,326 + A4249_RS02940 0.33 -0.0
624,326 + A4249_RS02940 0.33 -0.2
624,435 + A4249_RS02940 0.41 +0.1
624,552 + A4249_RS02940 0.49 -0.6
624,552 + A4249_RS02940 0.49 -0.3
624,552 + A4249_RS02940 0.49 -0.1
624,621 + A4249_RS02940 0.54 +0.2
624,621 + A4249_RS02940 0.54 -0.7
624,622 - A4249_RS02940 0.54 +0.8
624,622 - A4249_RS02940 0.54 -1.2
624,622 - A4249_RS02940 0.54 -0.1
624,651 + A4249_RS02940 0.56 -0.5
624,651 + A4249_RS02940 0.56 +1.1
624,651 + A4249_RS02940 0.56 +0.7
624,652 - A4249_RS02940 0.56 -0.0
624,688 - A4249_RS02940 0.59 +0.2
624,688 - A4249_RS02940 0.59 -1.4
624,688 - A4249_RS02940 0.59 -0.4

Or see this region's nucleotide sequence