Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01270

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS01255 and A4249_RS01260 are separated by 39 nucleotidesA4249_RS01260 and A4249_RS01265 are separated by 65 nucleotidesA4249_RS01265 and A4249_RS01270 overlap by 1 nucleotidesA4249_RS01270 and A4249_RS01275 overlap by 25 nucleotidesA4249_RS01275 and A4249_RS01280 are separated by 17 nucleotides A4249_RS01255: A4249_RS01255 - phage tail tube protein, at 240,650 to 241,639 _RS01255 A4249_RS01260: A4249_RS01260 - hypothetical protein, at 241,679 to 241,915 _RS01260 A4249_RS01265: A4249_RS01265 - hypothetical protein, at 241,981 to 242,490 _RS01265 A4249_RS01270: A4249_RS01270 - DUF6441 family protein, at 242,490 to 243,359 _RS01270 A4249_RS01275: A4249_RS01275 - hypothetical protein, at 243,335 to 243,673 _RS01275 A4249_RS01280: A4249_RS01280 - major capsid protein, at 243,691 to 244,770 _RS01280 Position (kb) 242 243 244Strain fitness (log2 ratio) -2 -1 0 1at 241.524 kb on + strand, within A4249_RS01255at 241.524 kb on + strand, within A4249_RS01255at 241.524 kb on + strand, within A4249_RS01255at 241.524 kb on + strand, within A4249_RS01255at 241.524 kb on + strand, within A4249_RS01255at 241.525 kb on - strand, within A4249_RS01255at 241.596 kb on + strandat 241.596 kb on + strandat 241.596 kb on + strandat 241.596 kb on + strandat 241.596 kb on + strandat 242.006 kb on + strandat 242.006 kb on + strandat 242.007 kb on - strandat 242.007 kb on - strandat 242.007 kb on - strandat 242.007 kb on - strandat 242.099 kb on + strand, within A4249_RS01265at 242.099 kb on + strand, within A4249_RS01265at 242.099 kb on + strand, within A4249_RS01265at 242.099 kb on + strand, within A4249_RS01265at 242.099 kb on + strand, within A4249_RS01265at 242.099 kb on + strand, within A4249_RS01265at 242.099 kb on + strand, within A4249_RS01265at 242.099 kb on + strand, within A4249_RS01265at 242.100 kb on - strand, within A4249_RS01265at 242.240 kb on + strand, within A4249_RS01265at 242.241 kb on - strand, within A4249_RS01265at 242.339 kb on - strand, within A4249_RS01265at 242.782 kb on + strand, within A4249_RS01270at 242.782 kb on + strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 242.969 kb on - strand, within A4249_RS01270at 243.071 kb on + strand, within A4249_RS01270at 243.071 kb on + strand, within A4249_RS01270at 243.072 kb on - strand, within A4249_RS01270at 243.072 kb on - strand, within A4249_RS01270at 243.072 kb on - strand, within A4249_RS01270at 243.161 kb on + strand, within A4249_RS01270at 243.230 kb on + strand, within A4249_RS01270at 243.230 kb on + strand, within A4249_RS01270at 243.230 kb on + strand, within A4249_RS01270at 243.231 kb on - strand, within A4249_RS01270at 243.231 kb on - strand, within A4249_RS01270at 243.231 kb on - strand, within A4249_RS01270at 243.231 kb on - strand, within A4249_RS01270at 243.253 kb on + strand, within A4249_RS01270at 243.253 kb on + strand, within A4249_RS01270at 243.253 kb on + strand, within A4249_RS01270at 243.254 kb on - strand, within A4249_RS01270at 243.422 kb on + strand, within A4249_RS01275at 243.423 kb on - strand, within A4249_RS01275at 243.423 kb on - strand, within A4249_RS01275at 243.423 kb on - strand, within A4249_RS01275at 243.423 kb on - strand, within A4249_RS01275at 243.423 kb on - strand, within A4249_RS01275at 243.647 kb on + strandat 243.887 kb on + strand, within A4249_RS01280at 243.887 kb on + strand, within A4249_RS01280at 243.887 kb on + strand, within A4249_RS01280at 243.887 kb on + strand, within A4249_RS01280at 243.887 kb on + strand, within A4249_RS01280at 243.887 kb on + strand, within A4249_RS01280at 243.888 kb on - strand, within A4249_RS01280at 243.888 kb on - strand, within A4249_RS01280at 243.888 kb on - strand, within A4249_RS01280at 243.920 kb on + strand, within A4249_RS01280at 243.989 kb on + strand, within A4249_RS01280at 243.989 kb on + strand, within A4249_RS01280at 243.990 kb on - strand, within A4249_RS01280at 243.990 kb on - strand, within A4249_RS01280at 243.990 kb on - strand, within A4249_RS01280at 243.990 kb on - strand, within A4249_RS01280at 243.990 kb on - strand, within A4249_RS01280at 244.087 kb on - strand, within A4249_RS01280at 244.087 kb on - strand, within A4249_RS01280at 244.087 kb on - strand, within A4249_RS01280at 244.087 kb on - strand, within A4249_RS01280at 244.087 kb on - strand, within A4249_RS01280at 244.087 kb on - strand, within A4249_RS01280at 244.094 kb on + strand, within A4249_RS01280at 244.094 kb on + strand, within A4249_RS01280at 244.095 kb on - strand, within A4249_RS01280at 244.095 kb on - strand, within A4249_RS01280at 244.236 kb on + strand, within A4249_RS01280at 244.259 kb on + strand, within A4249_RS01280at 244.259 kb on + strand, within A4249_RS01280at 244.259 kb on + strand, within A4249_RS01280at 244.260 kb on - strand, within A4249_RS01280at 244.301 kb on + strand, within A4249_RS01280at 244.301 kb on + strand, within A4249_RS01280at 244.301 kb on + strand, within A4249_RS01280at 244.301 kb on + strand, within A4249_RS01280at 244.301 kb on + strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280at 244.302 kb on - strand, within A4249_RS01280

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
241,524 + A4249_RS01255 0.88 -0.4
241,524 + A4249_RS01255 0.88 -0.4
241,524 + A4249_RS01255 0.88 -0.1
241,524 + A4249_RS01255 0.88 +0.1
241,524 + A4249_RS01255 0.88 +0.3
241,525 - A4249_RS01255 0.88 -0.8
241,596 + +0.5
241,596 + +0.1
241,596 + -0.6
241,596 + +0.2
241,596 + +0.4
242,006 + -0.0
242,006 + +0.1
242,007 - +0.3
242,007 - -0.2
242,007 - -0.4
242,007 - -1.6
242,099 + A4249_RS01265 0.23 +0.3
242,099 + A4249_RS01265 0.23 -0.5
242,099 + A4249_RS01265 0.23 -0.6
242,099 + A4249_RS01265 0.23 -0.6
242,099 + A4249_RS01265 0.23 +0.7
242,099 + A4249_RS01265 0.23 +0.4
242,099 + A4249_RS01265 0.23 -0.7
242,099 + A4249_RS01265 0.23 +0.4
242,100 - A4249_RS01265 0.23 +0.0
242,240 + A4249_RS01265 0.51 -0.6
242,241 - A4249_RS01265 0.51 -0.5
242,339 - A4249_RS01265 0.70 +0.5
242,782 + A4249_RS01270 0.34 -0.5
242,782 + A4249_RS01270 0.34 -0.1
242,969 - A4249_RS01270 0.55 +1.1
242,969 - A4249_RS01270 0.55 +0.7
242,969 - A4249_RS01270 0.55 -0.4
242,969 - A4249_RS01270 0.55 +0.6
242,969 - A4249_RS01270 0.55 +0.2
242,969 - A4249_RS01270 0.55 -0.1
242,969 - A4249_RS01270 0.55 +0.6
242,969 - A4249_RS01270 0.55 +0.4
243,071 + A4249_RS01270 0.67 +0.6
243,071 + A4249_RS01270 0.67 +0.1
243,072 - A4249_RS01270 0.67 -0.1
243,072 - A4249_RS01270 0.67 +0.1
243,072 - A4249_RS01270 0.67 -0.2
243,161 + A4249_RS01270 0.77 -0.2
243,230 + A4249_RS01270 0.85 +1.0
243,230 + A4249_RS01270 0.85 -0.7
243,230 + A4249_RS01270 0.85 +0.9
243,231 - A4249_RS01270 0.85 -2.2
243,231 - A4249_RS01270 0.85 +1.4
243,231 - A4249_RS01270 0.85 -0.6
243,231 - A4249_RS01270 0.85 +0.9
243,253 + A4249_RS01270 0.88 -0.3
243,253 + A4249_RS01270 0.88 +0.4
243,253 + A4249_RS01270 0.88 -1.4
243,254 - A4249_RS01270 0.88 +0.1
243,422 + A4249_RS01275 0.26 -0.7
243,423 - A4249_RS01275 0.26 -0.1
243,423 - A4249_RS01275 0.26 -0.6
243,423 - A4249_RS01275 0.26 -0.6
243,423 - A4249_RS01275 0.26 -0.5
243,423 - A4249_RS01275 0.26 -0.5
243,647 + +0.4
243,887 + A4249_RS01280 0.18 -1.1
243,887 + A4249_RS01280 0.18 +0.5
243,887 + A4249_RS01280 0.18 -0.4
243,887 + A4249_RS01280 0.18 +0.3
243,887 + A4249_RS01280 0.18 -0.1
243,887 + A4249_RS01280 0.18 -0.1
243,888 - A4249_RS01280 0.18 -0.3
243,888 - A4249_RS01280 0.18 +0.4
243,888 - A4249_RS01280 0.18 -0.2
243,920 + A4249_RS01280 0.21 -0.6
243,989 + A4249_RS01280 0.28 -0.4
243,989 + A4249_RS01280 0.28 -0.4
243,990 - A4249_RS01280 0.28 +0.1
243,990 - A4249_RS01280 0.28 -0.1
243,990 - A4249_RS01280 0.28 -1.0
243,990 - A4249_RS01280 0.28 -1.4
243,990 - A4249_RS01280 0.28 +0.8
244,087 - A4249_RS01280 0.37 -0.0
244,087 - A4249_RS01280 0.37 +0.4
244,087 - A4249_RS01280 0.37 -0.1
244,087 - A4249_RS01280 0.37 +0.9
244,087 - A4249_RS01280 0.37 -0.3
244,087 - A4249_RS01280 0.37 -0.4
244,094 + A4249_RS01280 0.37 +0.6
244,094 + A4249_RS01280 0.37 -0.3
244,095 - A4249_RS01280 0.37 -0.0
244,095 - A4249_RS01280 0.37 -1.0
244,236 + A4249_RS01280 0.50 +0.8
244,259 + A4249_RS01280 0.53 -0.5
244,259 + A4249_RS01280 0.53 +0.2
244,259 + A4249_RS01280 0.53 -0.0
244,260 - A4249_RS01280 0.53 +0.9
244,301 + A4249_RS01280 0.56 -0.4
244,301 + A4249_RS01280 0.56 +0.7
244,301 + A4249_RS01280 0.56 +0.4
244,301 + A4249_RS01280 0.56 -1.0
244,301 + A4249_RS01280 0.56 -0.1
244,302 - A4249_RS01280 0.57 +0.9
244,302 - A4249_RS01280 0.57 +0.6
244,302 - A4249_RS01280 0.57 +0.2
244,302 - A4249_RS01280 0.57 -0.5
244,302 - A4249_RS01280 0.57 -0.0
244,302 - A4249_RS01280 0.57 -0.8
244,302 - A4249_RS01280 0.57 +0.4
244,302 - A4249_RS01280 0.57 -0.0
244,302 - A4249_RS01280 0.57 +1.3
244,302 - A4249_RS01280 0.57 +1.2

Or see this region's nucleotide sequence