Experiment: Adenine 0.74 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01105 and A4249_RS01110 overlap by 4 nucleotides A4249_RS01110 and A4249_RS01115 are separated by 115 nucleotides A4249_RS01115 and A4249_RS01120 are separated by 110 nucleotides A4249_RS01120 and A4249_RS01125 are separated by 127 nucleotides
A4249_RS01105: A4249_RS01105 - YncE family protein, at 212,017 to 213,456
_RS01105
A4249_RS01110: A4249_RS01110 - DUF305 domain-containing protein, at 213,453 to 213,860
_RS01110
A4249_RS01115: A4249_RS01115 - LysR substrate-binding domain-containing protein, at 213,976 to 214,860
_RS01115
A4249_RS01120: A4249_RS01120 - uracil-DNA glycosylase, at 214,971 to 215,462
_RS01120
A4249_RS01125: A4249_RS01125 - hypothetical protein, at 215,590 to 216,111
_RS01125
Position (kb) 213
214
215 Strain fitness (log2 ratio) -2
-1
0
1
2 at 212.984 kb on + strand, within A4249_RS01105 at 212.984 kb on + strand, within A4249_RS01105 at 212.984 kb on + strand, within A4249_RS01105 at 212.985 kb on - strand, within A4249_RS01105 at 213.011 kb on + strand, within A4249_RS01105 at 213.011 kb on + strand, within A4249_RS01105 at 213.011 kb on + strand, within A4249_RS01105 at 213.011 kb on + strand, within A4249_RS01105 at 213.011 kb on + strand, within A4249_RS01105 at 213.012 kb on - strand, within A4249_RS01105 at 213.012 kb on - strand, within A4249_RS01105 at 213.012 kb on - strand, within A4249_RS01105 at 213.012 kb on - strand, within A4249_RS01105 at 213.089 kb on + strand, within A4249_RS01105 at 213.089 kb on + strand, within A4249_RS01105 at 213.089 kb on + strand, within A4249_RS01105 at 213.089 kb on + strand, within A4249_RS01105 at 213.089 kb on + strand, within A4249_RS01105 at 213.089 kb on + strand, within A4249_RS01105 at 213.089 kb on + strand, within A4249_RS01105 at 213.089 kb on + strand, within A4249_RS01105 at 213.089 kb on + strand, within A4249_RS01105 at 213.089 kb on + strand, within A4249_RS01105 at 213.089 kb on + strand, within A4249_RS01105 at 213.089 kb on + strand, within A4249_RS01105 at 213.090 kb on - strand, within A4249_RS01105 at 213.090 kb on - strand, within A4249_RS01105 at 213.090 kb on - strand, within A4249_RS01105 at 213.090 kb on - strand, within A4249_RS01105 at 213.090 kb on - strand, within A4249_RS01105 at 213.090 kb on - strand, within A4249_RS01105 at 213.090 kb on - strand, within A4249_RS01105 at 213.096 kb on + strand, within A4249_RS01105 at 213.096 kb on + strand, within A4249_RS01105 at 213.096 kb on + strand, within A4249_RS01105 at 213.096 kb on + strand, within A4249_RS01105 at 213.096 kb on + strand, within A4249_RS01105 at 213.096 kb on + strand, within A4249_RS01105 at 213.096 kb on + strand, within A4249_RS01105 at 213.096 kb on + strand, within A4249_RS01105 at 213.096 kb on + strand, within A4249_RS01105 at 213.096 kb on + strand, within A4249_RS01105 at 213.097 kb on - strand, within A4249_RS01105 at 213.097 kb on - strand, within A4249_RS01105 at 213.097 kb on - strand, within A4249_RS01105 at 213.097 kb on - strand, within A4249_RS01105 at 213.097 kb on - strand, within A4249_RS01105 at 213.097 kb on - strand, within A4249_RS01105 at 213.097 kb on - strand, within A4249_RS01105 at 213.097 kb on - strand, within A4249_RS01105 at 213.097 kb on - strand, within A4249_RS01105 at 213.218 kb on + strand, within A4249_RS01105 at 213.218 kb on + strand, within A4249_RS01105 at 213.219 kb on - strand, within A4249_RS01105 at 213.219 kb on - strand, within A4249_RS01105 at 213.219 kb on - strand, within A4249_RS01105 at 213.219 kb on - strand, within A4249_RS01105 at 213.219 kb on - strand, within A4249_RS01105 at 213.329 kb on + strand at 213.329 kb on + strand at 213.329 kb on + strand at 213.329 kb on + strand at 213.330 kb on - strand at 213.330 kb on - strand at 213.330 kb on - strand at 213.526 kb on + strand, within A4249_RS01110 at 213.527 kb on - strand, within A4249_RS01110 at 213.527 kb on - strand, within A4249_RS01110 at 213.527 kb on - strand, within A4249_RS01110 at 213.527 kb on - strand, within A4249_RS01110 at 213.608 kb on - strand, within A4249_RS01110 at 213.699 kb on + strand, within A4249_RS01110 at 213.700 kb on - strand, within A4249_RS01110 at 213.700 kb on - strand, within A4249_RS01110 at 213.700 kb on - strand, within A4249_RS01110 at 213.700 kb on - strand, within A4249_RS01110 at 213.700 kb on - strand, within A4249_RS01110 at 213.782 kb on + strand, within A4249_RS01110 at 213.782 kb on + strand, within A4249_RS01110 at 213.782 kb on + strand, within A4249_RS01110 at 213.782 kb on + strand, within A4249_RS01110 at 213.782 kb on + strand, within A4249_RS01110 at 213.782 kb on + strand, within A4249_RS01110 at 213.783 kb on - strand, within A4249_RS01110 at 213.783 kb on - strand, within A4249_RS01110 at 213.783 kb on - strand, within A4249_RS01110 at 213.783 kb on - strand, within A4249_RS01110 at 213.964 kb on + strand at 213.964 kb on + strand at 213.965 kb on - strand at 214.028 kb on + strand at 214.029 kb on - strand at 214.029 kb on - strand at 214.029 kb on - strand at 214.359 kb on + strand, within A4249_RS01115 at 214.359 kb on + strand, within A4249_RS01115 at 214.360 kb on - strand, within A4249_RS01115 at 214.360 kb on - strand, within A4249_RS01115 at 214.360 kb on - strand, within A4249_RS01115 at 214.964 kb on + strand at 214.965 kb on - strand at 214.988 kb on + strand at 214.988 kb on + strand at 214.988 kb on + strand at 214.988 kb on + strand at 214.989 kb on - strand at 214.989 kb on - strand at 214.989 kb on - strand at 214.989 kb on - strand at 215.248 kb on + strand, within A4249_RS01120 at 215.248 kb on + strand, within A4249_RS01120 at 215.249 kb on - strand, within A4249_RS01120 at 215.249 kb on - strand, within A4249_RS01120 at 215.291 kb on - strand, within A4249_RS01120 at 215.291 kb on - strand, within A4249_RS01120 at 215.672 kb on + strand, within A4249_RS01125 at 215.672 kb on + strand, within A4249_RS01125 at 215.673 kb on - strand, within A4249_RS01125 at 215.806 kb on + strand, within A4249_RS01125 at 215.806 kb on + strand, within A4249_RS01125 at 215.807 kb on - strand, within A4249_RS01125
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C) remove 212,984 + A4249_RS01105 0.67 +0.4 212,984 + A4249_RS01105 0.67 +0.0 212,984 + A4249_RS01105 0.67 +0.3 212,985 - A4249_RS01105 0.67 -1.8 213,011 + A4249_RS01105 0.69 +1.1 213,011 + A4249_RS01105 0.69 -1.1 213,011 + A4249_RS01105 0.69 +0.3 213,011 + A4249_RS01105 0.69 -0.7 213,011 + A4249_RS01105 0.69 +0.3 213,012 - A4249_RS01105 0.69 +0.1 213,012 - A4249_RS01105 0.69 +0.1 213,012 - A4249_RS01105 0.69 -0.5 213,012 - A4249_RS01105 0.69 -0.1 213,089 + A4249_RS01105 0.74 +0.5 213,089 + A4249_RS01105 0.74 -0.8 213,089 + A4249_RS01105 0.74 +0.3 213,089 + A4249_RS01105 0.74 -0.3 213,089 + A4249_RS01105 0.74 +0.1 213,089 + A4249_RS01105 0.74 -0.5 213,089 + A4249_RS01105 0.74 +0.7 213,089 + A4249_RS01105 0.74 +0.5 213,089 + A4249_RS01105 0.74 +0.6 213,089 + A4249_RS01105 0.74 +0.3 213,089 + A4249_RS01105 0.74 +0.3 213,089 + A4249_RS01105 0.74 +0.7 213,090 - A4249_RS01105 0.75 -0.6 213,090 - A4249_RS01105 0.75 +0.0 213,090 - A4249_RS01105 0.75 -2.1 213,090 - A4249_RS01105 0.75 -0.8 213,090 - A4249_RS01105 0.75 +0.1 213,090 - A4249_RS01105 0.75 +0.1 213,090 - A4249_RS01105 0.75 -0.2 213,096 + A4249_RS01105 0.75 -0.6 213,096 + A4249_RS01105 0.75 +0.8 213,096 + A4249_RS01105 0.75 -0.1 213,096 + A4249_RS01105 0.75 -0.2 213,096 + A4249_RS01105 0.75 -2.0 213,096 + A4249_RS01105 0.75 -0.2 213,096 + A4249_RS01105 0.75 -0.2 213,096 + A4249_RS01105 0.75 -0.7 213,096 + A4249_RS01105 0.75 +0.1 213,096 + A4249_RS01105 0.75 +0.2 213,097 - A4249_RS01105 0.75 -0.3 213,097 - A4249_RS01105 0.75 +0.5 213,097 - A4249_RS01105 0.75 +0.2 213,097 - A4249_RS01105 0.75 +0.0 213,097 - A4249_RS01105 0.75 -1.1 213,097 - A4249_RS01105 0.75 +0.7 213,097 - A4249_RS01105 0.75 +0.1 213,097 - A4249_RS01105 0.75 +0.2 213,097 - A4249_RS01105 0.75 -2.4 213,218 + A4249_RS01105 0.83 -0.7 213,218 + A4249_RS01105 0.83 -1.1 213,219 - A4249_RS01105 0.83 +0.4 213,219 - A4249_RS01105 0.83 -1.2 213,219 - A4249_RS01105 0.83 -0.1 213,219 - A4249_RS01105 0.83 -0.0 213,219 - A4249_RS01105 0.83 +0.4 213,329 + -1.5 213,329 + +1.1 213,329 + -0.1 213,329 + -0.1 213,330 - +0.5 213,330 - -0.1 213,330 - +0.7 213,526 + A4249_RS01110 0.18 +0.2 213,527 - A4249_RS01110 0.18 -1.1 213,527 - A4249_RS01110 0.18 +1.2 213,527 - A4249_RS01110 0.18 +0.3 213,527 - A4249_RS01110 0.18 +1.8 213,608 - A4249_RS01110 0.38 +0.2 213,699 + A4249_RS01110 0.60 -0.2 213,700 - A4249_RS01110 0.61 -0.2 213,700 - A4249_RS01110 0.61 -0.4 213,700 - A4249_RS01110 0.61 -0.0 213,700 - A4249_RS01110 0.61 -2.4 213,700 - A4249_RS01110 0.61 -0.8 213,782 + A4249_RS01110 0.81 -0.9 213,782 + A4249_RS01110 0.81 +0.6 213,782 + A4249_RS01110 0.81 +0.3 213,782 + A4249_RS01110 0.81 -0.4 213,782 + A4249_RS01110 0.81 -1.5 213,782 + A4249_RS01110 0.81 +0.3 213,783 - A4249_RS01110 0.81 +0.1 213,783 - A4249_RS01110 0.81 +0.1 213,783 - A4249_RS01110 0.81 -0.8 213,783 - A4249_RS01110 0.81 +1.0 213,964 + +0.7 213,964 + -0.2 213,965 - +0.2 214,028 + +0.3 214,029 - +1.0 214,029 - -0.1 214,029 - +1.6 214,359 + A4249_RS01115 0.43 -0.4 214,359 + A4249_RS01115 0.43 -0.1 214,360 - A4249_RS01115 0.43 -0.1 214,360 - A4249_RS01115 0.43 -1.2 214,360 - A4249_RS01115 0.43 -0.4 214,964 + +0.4 214,965 - +0.6 214,988 + +0.2 214,988 + -0.2 214,988 + -0.5 214,988 + -0.6 214,989 - -0.5 214,989 - -0.7 214,989 - -0.5 214,989 - +0.8 215,248 + A4249_RS01120 0.56 -0.4 215,248 + A4249_RS01120 0.56 -1.0 215,249 - A4249_RS01120 0.57 +0.2 215,249 - A4249_RS01120 0.57 +0.4 215,291 - A4249_RS01120 0.65 -0.9 215,291 - A4249_RS01120 0.65 +0.1 215,672 + A4249_RS01125 0.16 -0.4 215,672 + A4249_RS01125 0.16 +0.7 215,673 - A4249_RS01125 0.16 +0.4 215,806 + A4249_RS01125 0.41 -0.1 215,806 + A4249_RS01125 0.41 -0.9 215,807 - A4249_RS01125 0.42 -0.1
Or see this region's nucleotide sequence