Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00410

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS16425 and A4249_RS00410 are separated by 375 nucleotidesA4249_RS00410 and A4249_RS00415 are separated by 61 nucleotidesA4249_RS00415 and A4249_RS00420 are separated by 63 nucleotides A4249_RS16425: A4249_RS16425 - hypothetical protein, at 68,531 to 69,388 _RS16425 A4249_RS00410: A4249_RS00410 - OmpA family protein, at 69,764 to 70,315 _RS00410 A4249_RS00415: A4249_RS00415 - NAD-dependent deacylase, at 70,377 to 71,087 _RS00415 A4249_RS00420: A4249_RS00420 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 71,151 to 72,257 _RS00420 Position (kb) 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.795 kb on + strand, within A4249_RS16425at 68.796 kb on - strand, within A4249_RS16425at 68.796 kb on - strand, within A4249_RS16425at 69.450 kb on - strandat 69.511 kb on + strandat 69.511 kb on + strandat 69.511 kb on + strandat 69.512 kb on - strandat 69.512 kb on - strandat 69.625 kb on - strandat 69.634 kb on - strandat 69.646 kb on + strandat 69.646 kb on + strandat 69.686 kb on - strandat 69.686 kb on - strandat 69.968 kb on + strand, within A4249_RS00410at 69.968 kb on + strand, within A4249_RS00410at 69.969 kb on - strand, within A4249_RS00410at 69.969 kb on - strand, within A4249_RS00410at 70.091 kb on + strand, within A4249_RS00410at 70.091 kb on + strand, within A4249_RS00410at 70.091 kb on + strand, within A4249_RS00410at 70.091 kb on + strand, within A4249_RS00410at 70.092 kb on - strand, within A4249_RS00410at 70.092 kb on - strand, within A4249_RS00410at 70.092 kb on - strand, within A4249_RS00410at 70.092 kb on - strand, within A4249_RS00410at 70.109 kb on + strand, within A4249_RS00410at 70.110 kb on - strand, within A4249_RS00410at 70.110 kb on - strand, within A4249_RS00410at 70.110 kb on - strand, within A4249_RS00410at 70.110 kb on - strand, within A4249_RS00410at 70.138 kb on + strand, within A4249_RS00410at 70.138 kb on + strand, within A4249_RS00410at 70.229 kb on + strand, within A4249_RS00410at 70.229 kb on + strand, within A4249_RS00410at 70.229 kb on + strand, within A4249_RS00410at 70.230 kb on - strand, within A4249_RS00410at 70.230 kb on - strand, within A4249_RS00410at 70.314 kb on - strandat 70.314 kb on - strandat 70.378 kb on + strandat 70.379 kb on - strandat 70.379 kb on - strandat 70.495 kb on + strand, within A4249_RS00415at 70.748 kb on + strand, within A4249_RS00415at 70.748 kb on + strand, within A4249_RS00415at 70.749 kb on - strand, within A4249_RS00415at 70.749 kb on - strand, within A4249_RS00415at 70.749 kb on - strand, within A4249_RS00415at 70.749 kb on - strand, within A4249_RS00415at 70.922 kb on + strand, within A4249_RS00415at 70.922 kb on + strand, within A4249_RS00415at 70.922 kb on + strand, within A4249_RS00415at 70.922 kb on + strand, within A4249_RS00415at 70.923 kb on - strand, within A4249_RS00415at 70.924 kb on + strand, within A4249_RS00415at 70.924 kb on + strand, within A4249_RS00415at 70.924 kb on + strand, within A4249_RS00415at 70.924 kb on + strand, within A4249_RS00415at 70.924 kb on + strand, within A4249_RS00415at 70.924 kb on + strand, within A4249_RS00415at 70.924 kb on + strand, within A4249_RS00415at 70.924 kb on + strand, within A4249_RS00415at 70.924 kb on + strand, within A4249_RS00415at 70.924 kb on + strand, within A4249_RS00415at 70.924 kb on + strand, within A4249_RS00415at 70.925 kb on - strand, within A4249_RS00415at 70.925 kb on - strand, within A4249_RS00415at 70.925 kb on - strand, within A4249_RS00415at 70.925 kb on - strand, within A4249_RS00415at 70.925 kb on - strand, within A4249_RS00415at 70.925 kb on - strand, within A4249_RS00415at 70.925 kb on - strand, within A4249_RS00415at 70.925 kb on - strand, within A4249_RS00415at 70.925 kb on - strand, within A4249_RS00415at 70.925 kb on - strand, within A4249_RS00415at 70.958 kb on - strand, within A4249_RS00415at 70.958 kb on - strand, within A4249_RS00415at 71.047 kb on - strandat 71.098 kb on + strandat 71.098 kb on + strandat 71.098 kb on + strandat 71.098 kb on + strandat 71.098 kb on + strandat 71.098 kb on + strandat 71.098 kb on + strandat 71.098 kb on + strandat 71.098 kb on + strandat 71.098 kb on + strandat 71.099 kb on - strandat 71.099 kb on - strandat 71.099 kb on - strandat 71.099 kb on - strandat 71.099 kb on - strandat 71.099 kb on - strandat 71.117 kb on + strandat 71.117 kb on + strandat 71.117 kb on + strandat 71.117 kb on + strandat 71.117 kb on + strandat 71.118 kb on - strandat 71.118 kb on - strandat 71.118 kb on - strandat 71.118 kb on - strandat 71.118 kb on - strandat 71.118 kb on - strandat 71.118 kb on - strandat 71.283 kb on + strand, within A4249_RS00420at 71.283 kb on + strand, within A4249_RS00420at 71.284 kb on - strand, within A4249_RS00420at 71.284 kb on - strand, within A4249_RS00420at 71.284 kb on - strand, within A4249_RS00420at 71.284 kb on - strand, within A4249_RS00420at 71.284 kb on - strand, within A4249_RS00420at 71.285 kb on + strand, within A4249_RS00420at 71.285 kb on + strand, within A4249_RS00420at 71.285 kb on + strand, within A4249_RS00420at 71.286 kb on - strand, within A4249_RS00420at 71.286 kb on - strand, within A4249_RS00420at 71.286 kb on - strand, within A4249_RS00420

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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68,795 + A4249_RS16425 0.31 -0.5
68,796 - A4249_RS16425 0.31 -0.4
68,796 - A4249_RS16425 0.31 +0.2
69,450 - +0.1
69,511 + +0.0
69,511 + +0.0
69,511 + -0.3
69,512 - +0.1
69,512 - -0.3
69,625 - +0.2
69,634 - -0.1
69,646 + -0.2
69,646 + +0.2
69,686 - +2.3
69,686 - -0.1
69,968 + A4249_RS00410 0.37 -1.0
69,968 + A4249_RS00410 0.37 -2.1
69,969 - A4249_RS00410 0.37 -0.5
69,969 - A4249_RS00410 0.37 +0.2
70,091 + A4249_RS00410 0.59 +0.5
70,091 + A4249_RS00410 0.59 -1.0
70,091 + A4249_RS00410 0.59 +0.2
70,091 + A4249_RS00410 0.59 -0.2
70,092 - A4249_RS00410 0.59 -1.0
70,092 - A4249_RS00410 0.59 -0.2
70,092 - A4249_RS00410 0.59 -0.3
70,092 - A4249_RS00410 0.59 +0.7
70,109 + A4249_RS00410 0.62 -2.5
70,110 - A4249_RS00410 0.63 +2.0
70,110 - A4249_RS00410 0.63 +0.2
70,110 - A4249_RS00410 0.63 +0.9
70,110 - A4249_RS00410 0.63 +0.2
70,138 + A4249_RS00410 0.68 -1.1
70,138 + A4249_RS00410 0.68 -0.4
70,229 + A4249_RS00410 0.84 -0.6
70,229 + A4249_RS00410 0.84 -0.8
70,229 + A4249_RS00410 0.84 -0.1
70,230 - A4249_RS00410 0.84 -0.2
70,230 - A4249_RS00410 0.84 -0.2
70,314 - -0.3
70,314 - +0.2
70,378 + -0.4
70,379 - +0.5
70,379 - -0.5
70,495 + A4249_RS00415 0.17 +0.4
70,748 + A4249_RS00415 0.52 -1.1
70,748 + A4249_RS00415 0.52 -0.2
70,749 - A4249_RS00415 0.52 -0.4
70,749 - A4249_RS00415 0.52 -1.4
70,749 - A4249_RS00415 0.52 -0.7
70,749 - A4249_RS00415 0.52 -0.3
70,922 + A4249_RS00415 0.77 -0.3
70,922 + A4249_RS00415 0.77 -0.3
70,922 + A4249_RS00415 0.77 -0.6
70,922 + A4249_RS00415 0.77 -0.5
70,923 - A4249_RS00415 0.77 -1.3
70,924 + A4249_RS00415 0.77 -3.0
70,924 + A4249_RS00415 0.77 -0.1
70,924 + A4249_RS00415 0.77 -0.7
70,924 + A4249_RS00415 0.77 -0.4
70,924 + A4249_RS00415 0.77 +0.1
70,924 + A4249_RS00415 0.77 -0.5
70,924 + A4249_RS00415 0.77 -2.8
70,924 + A4249_RS00415 0.77 -0.8
70,924 + A4249_RS00415 0.77 +0.3
70,924 + A4249_RS00415 0.77 -0.4
70,924 + A4249_RS00415 0.77 -0.1
70,925 - A4249_RS00415 0.77 -0.2
70,925 - A4249_RS00415 0.77 +1.0
70,925 - A4249_RS00415 0.77 -0.6
70,925 - A4249_RS00415 0.77 -0.0
70,925 - A4249_RS00415 0.77 -0.7
70,925 - A4249_RS00415 0.77 -1.8
70,925 - A4249_RS00415 0.77 +0.3
70,925 - A4249_RS00415 0.77 +1.2
70,925 - A4249_RS00415 0.77 -1.1
70,925 - A4249_RS00415 0.77 -0.8
70,958 - A4249_RS00415 0.82 -0.2
70,958 - A4249_RS00415 0.82 -0.4
71,047 - -2.2
71,098 + +0.0
71,098 + -0.3
71,098 + -2.0
71,098 + -2.4
71,098 + -0.3
71,098 + +0.6
71,098 + -0.5
71,098 + +1.1
71,098 + -0.5
71,098 + -0.5
71,099 - -0.3
71,099 - -0.9
71,099 - -1.1
71,099 - -1.4
71,099 - -0.5
71,099 - -0.3
71,117 + -0.4
71,117 + +1.6
71,117 + -0.4
71,117 + +0.3
71,117 + -0.4
71,118 - -0.2
71,118 - +1.0
71,118 - +0.9
71,118 - +0.5
71,118 - -1.9
71,118 - -0.4
71,118 - +0.7
71,283 + A4249_RS00420 0.12 -1.3
71,283 + A4249_RS00420 0.12 -1.2
71,284 - A4249_RS00420 0.12 -1.4
71,284 - A4249_RS00420 0.12 -0.5
71,284 - A4249_RS00420 0.12 -1.4
71,284 - A4249_RS00420 0.12 +0.7
71,284 - A4249_RS00420 0.12 -0.6
71,285 + A4249_RS00420 0.12 -0.4
71,285 + A4249_RS00420 0.12 +0.8
71,285 + A4249_RS00420 0.12 +0.3
71,286 - A4249_RS00420 0.12 -0.7
71,286 - A4249_RS00420 0.12 -0.7
71,286 - A4249_RS00420 0.12 +0.1

Or see this region's nucleotide sequence