Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00240

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00230 and A4249_RS00235 are separated by 71 nucleotidesA4249_RS00235 and A4249_RS00240 are separated by 5 nucleotidesA4249_RS00240 and A4249_RS00245 are separated by 4 nucleotidesA4249_RS00245 and A4249_RS00250 are separated by 42 nucleotides A4249_RS00230: A4249_RS00230 - MBL fold metallo-hydrolase, at 39,484 to 40,350 _RS00230 A4249_RS00235: A4249_RS00235 - metalloregulator ArsR/SmtB family transcription factor, at 40,422 to 40,754 _RS00235 A4249_RS00240: A4249_RS00240 - rhodanese family protein, at 40,760 to 41,308 _RS00240 A4249_RS00245: A4249_RS00245 - sulfite exporter TauE/SafE family protein, at 41,313 to 42,095 _RS00245 A4249_RS00250: A4249_RS00250 - bifunctional protein-serine/threonine kinase/phosphatase, at 42,138 to 43,838 _RS00250 Position (kb) 40 41 42Strain fitness (log2 ratio) -2 -1 0 1 2at 39.794 kb on + strand, within A4249_RS00230at 39.842 kb on + strand, within A4249_RS00230at 39.842 kb on + strand, within A4249_RS00230at 39.843 kb on - strand, within A4249_RS00230at 40.292 kb on + strandat 40.292 kb on + strandat 40.292 kb on + strandat 40.293 kb on - strandat 40.293 kb on - strandat 40.293 kb on - strandat 40.293 kb on - strandat 40.668 kb on + strand, within A4249_RS00235at 40.668 kb on + strand, within A4249_RS00235at 40.669 kb on - strand, within A4249_RS00235at 40.720 kb on + strand, within A4249_RS00235at 40.722 kb on + strandat 40.722 kb on + strandat 40.722 kb on + strandat 40.722 kb on + strandat 40.722 kb on + strandat 40.722 kb on + strandat 40.722 kb on + strandat 40.723 kb on - strandat 40.723 kb on - strandat 40.723 kb on - strandat 40.723 kb on - strandat 40.723 kb on - strandat 40.723 kb on - strandat 40.903 kb on - strand, within A4249_RS00240at 40.903 kb on - strand, within A4249_RS00240at 41.083 kb on + strand, within A4249_RS00240at 41.083 kb on + strand, within A4249_RS00240at 41.084 kb on - strand, within A4249_RS00240at 41.427 kb on + strand, within A4249_RS00245at 41.427 kb on + strand, within A4249_RS00245at 41.427 kb on + strand, within A4249_RS00245at 41.427 kb on + strand, within A4249_RS00245at 41.427 kb on + strand, within A4249_RS00245at 41.427 kb on + strand, within A4249_RS00245at 41.427 kb on + strand, within A4249_RS00245at 41.427 kb on + strand, within A4249_RS00245at 41.427 kb on + strand, within A4249_RS00245at 41.427 kb on + strand, within A4249_RS00245at 41.427 kb on + strand, within A4249_RS00245at 41.427 kb on + strand, within A4249_RS00245at 41.428 kb on - strand, within A4249_RS00245at 41.428 kb on - strand, within A4249_RS00245at 41.428 kb on - strand, within A4249_RS00245at 41.428 kb on - strand, within A4249_RS00245at 41.428 kb on - strand, within A4249_RS00245at 41.428 kb on - strand, within A4249_RS00245at 41.428 kb on - strand, within A4249_RS00245at 41.428 kb on - strand, within A4249_RS00245at 41.428 kb on - strand, within A4249_RS00245at 41.428 kb on - strand, within A4249_RS00245at 41.611 kb on + strand, within A4249_RS00245at 41.611 kb on + strand, within A4249_RS00245at 41.612 kb on - strand, within A4249_RS00245at 41.612 kb on - strand, within A4249_RS00245at 41.665 kb on + strand, within A4249_RS00245at 41.666 kb on - strand, within A4249_RS00245at 41.904 kb on + strand, within A4249_RS00245at 41.904 kb on + strand, within A4249_RS00245at 41.904 kb on + strand, within A4249_RS00245at 41.904 kb on + strand, within A4249_RS00245at 41.904 kb on + strand, within A4249_RS00245at 41.904 kb on + strand, within A4249_RS00245at 41.904 kb on + strand, within A4249_RS00245at 41.904 kb on + strand, within A4249_RS00245at 41.905 kb on - strand, within A4249_RS00245at 41.905 kb on - strand, within A4249_RS00245at 41.905 kb on - strand, within A4249_RS00245at 41.905 kb on - strand, within A4249_RS00245at 41.905 kb on - strand, within A4249_RS00245at 41.905 kb on - strand, within A4249_RS00245at 41.905 kb on - strand, within A4249_RS00245at 41.905 kb on - strand, within A4249_RS00245at 41.905 kb on - strand, within A4249_RS00245at 41.905 kb on - strand, within A4249_RS00245at 41.905 kb on - strand, within A4249_RS00245at 41.905 kb on - strand, within A4249_RS00245at 41.905 kb on - strand, within A4249_RS00245at 41.905 kb on - strand, within A4249_RS00245at 42.063 kb on + strandat 42.063 kb on + strandat 42.064 kb on - strandat 42.064 kb on - strandat 42.064 kb on - strandat 42.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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39,794 + A4249_RS00230 0.36 +0.4
39,842 + A4249_RS00230 0.41 -0.9
39,842 + A4249_RS00230 0.41 +0.3
39,843 - A4249_RS00230 0.41 -1.2
40,292 + -0.4
40,292 + -1.0
40,292 + -0.8
40,293 - +0.1
40,293 - +0.4
40,293 - +0.1
40,293 - -0.2
40,668 + A4249_RS00235 0.74 +0.1
40,668 + A4249_RS00235 0.74 -0.4
40,669 - A4249_RS00235 0.74 +1.0
40,720 + A4249_RS00235 0.89 -1.2
40,722 + +0.8
40,722 + -0.5
40,722 + +0.1
40,722 + -0.8
40,722 + -0.4
40,722 + -0.0
40,722 + +0.3
40,723 - -1.2
40,723 - +0.2
40,723 - -0.7
40,723 - +0.1
40,723 - +0.1
40,723 - -1.7
40,903 - A4249_RS00240 0.26 -0.6
40,903 - A4249_RS00240 0.26 -0.4
41,083 + A4249_RS00240 0.59 -0.1
41,083 + A4249_RS00240 0.59 -0.6
41,084 - A4249_RS00240 0.59 -1.1
41,427 + A4249_RS00245 0.15 +0.4
41,427 + A4249_RS00245 0.15 +0.1
41,427 + A4249_RS00245 0.15 +0.3
41,427 + A4249_RS00245 0.15 -0.0
41,427 + A4249_RS00245 0.15 +0.3
41,427 + A4249_RS00245 0.15 +0.2
41,427 + A4249_RS00245 0.15 -0.1
41,427 + A4249_RS00245 0.15 -0.9
41,427 + A4249_RS00245 0.15 -0.2
41,427 + A4249_RS00245 0.15 +0.1
41,427 + A4249_RS00245 0.15 -0.3
41,427 + A4249_RS00245 0.15 -0.1
41,428 - A4249_RS00245 0.15 +0.1
41,428 - A4249_RS00245 0.15 +0.1
41,428 - A4249_RS00245 0.15 +1.2
41,428 - A4249_RS00245 0.15 +0.3
41,428 - A4249_RS00245 0.15 +0.0
41,428 - A4249_RS00245 0.15 +0.6
41,428 - A4249_RS00245 0.15 +0.6
41,428 - A4249_RS00245 0.15 -0.1
41,428 - A4249_RS00245 0.15 +0.6
41,428 - A4249_RS00245 0.15 -0.1
41,611 + A4249_RS00245 0.38 +0.2
41,611 + A4249_RS00245 0.38 -0.6
41,612 - A4249_RS00245 0.38 +0.2
41,612 - A4249_RS00245 0.38 +0.1
41,665 + A4249_RS00245 0.45 -2.4
41,666 - A4249_RS00245 0.45 -0.1
41,904 + A4249_RS00245 0.75 -0.1
41,904 + A4249_RS00245 0.75 +0.1
41,904 + A4249_RS00245 0.75 -0.0
41,904 + A4249_RS00245 0.75 +0.2
41,904 + A4249_RS00245 0.75 +0.1
41,904 + A4249_RS00245 0.75 +0.2
41,904 + A4249_RS00245 0.75 +0.4
41,904 + A4249_RS00245 0.75 -0.1
41,905 - A4249_RS00245 0.76 +1.8
41,905 - A4249_RS00245 0.76 +0.5
41,905 - A4249_RS00245 0.76 -0.5
41,905 - A4249_RS00245 0.76 -0.7
41,905 - A4249_RS00245 0.76 +0.1
41,905 - A4249_RS00245 0.76 -0.8
41,905 - A4249_RS00245 0.76 -0.1
41,905 - A4249_RS00245 0.76 -0.1
41,905 - A4249_RS00245 0.76 +0.9
41,905 - A4249_RS00245 0.76 +0.2
41,905 - A4249_RS00245 0.76 -0.7
41,905 - A4249_RS00245 0.76 +0.0
41,905 - A4249_RS00245 0.76 +0.0
41,905 - A4249_RS00245 0.76 +0.3
42,063 + -0.3
42,063 + +0.1
42,064 - +0.8
42,064 - +0.1
42,064 - -0.9
42,064 - +0.4

Or see this region's nucleotide sequence