Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00225

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00215 and A4249_RS00220 are separated by 5 nucleotidesA4249_RS00220 and A4249_RS00225 are separated by 158 nucleotidesA4249_RS00225 and A4249_RS00230 are separated by 104 nucleotides A4249_RS00215: A4249_RS00215 - bifunctional diguanylate cyclase/phosphodiesterase, at 36,754 to 38,421 _RS00215 A4249_RS00220: A4249_RS00220 - VOC family protein, at 38,427 to 38,780 _RS00220 A4249_RS00225: A4249_RS00225 - TetR family transcriptional regulator, at 38,939 to 39,379 _RS00225 A4249_RS00230: A4249_RS00230 - MBL fold metallo-hydrolase, at 39,484 to 40,350 _RS00230 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1at 38.119 kb on + strand, within A4249_RS00215at 38.119 kb on + strand, within A4249_RS00215at 38.119 kb on + strand, within A4249_RS00215at 38.120 kb on - strand, within A4249_RS00215at 38.120 kb on - strand, within A4249_RS00215at 38.120 kb on - strand, within A4249_RS00215at 38.161 kb on + strand, within A4249_RS00215at 38.330 kb on - strandat 38.365 kb on + strandat 38.365 kb on + strandat 38.366 kb on - strandat 38.366 kb on - strandat 38.366 kb on - strandat 38.366 kb on - strandat 38.419 kb on + strandat 38.419 kb on + strandat 38.419 kb on + strandat 38.420 kb on - strandat 38.420 kb on - strandat 38.428 kb on + strandat 38.428 kb on + strandat 38.488 kb on + strand, within A4249_RS00220at 38.488 kb on + strand, within A4249_RS00220at 38.488 kb on + strand, within A4249_RS00220at 38.488 kb on + strand, within A4249_RS00220at 38.488 kb on + strand, within A4249_RS00220at 38.488 kb on + strand, within A4249_RS00220at 38.489 kb on - strand, within A4249_RS00220at 38.489 kb on - strand, within A4249_RS00220at 38.489 kb on - strand, within A4249_RS00220at 38.489 kb on - strand, within A4249_RS00220at 38.572 kb on + strand, within A4249_RS00220at 38.572 kb on + strand, within A4249_RS00220at 38.572 kb on + strand, within A4249_RS00220at 38.572 kb on + strand, within A4249_RS00220at 38.572 kb on + strand, within A4249_RS00220at 38.572 kb on + strand, within A4249_RS00220at 38.573 kb on - strand, within A4249_RS00220at 38.573 kb on - strand, within A4249_RS00220at 38.573 kb on - strand, within A4249_RS00220at 38.573 kb on - strand, within A4249_RS00220at 38.573 kb on - strand, within A4249_RS00220at 38.573 kb on - strand, within A4249_RS00220at 38.573 kb on - strand, within A4249_RS00220at 38.578 kb on + strand, within A4249_RS00220at 38.578 kb on + strand, within A4249_RS00220at 38.578 kb on + strand, within A4249_RS00220at 38.578 kb on + strand, within A4249_RS00220at 38.578 kb on + strand, within A4249_RS00220at 38.578 kb on + strand, within A4249_RS00220at 38.578 kb on + strand, within A4249_RS00220at 38.578 kb on + strand, within A4249_RS00220at 38.578 kb on + strand, within A4249_RS00220at 38.579 kb on - strand, within A4249_RS00220at 38.579 kb on - strand, within A4249_RS00220at 38.639 kb on + strand, within A4249_RS00220at 38.639 kb on + strand, within A4249_RS00220at 38.639 kb on + strand, within A4249_RS00220at 38.640 kb on - strand, within A4249_RS00220at 38.640 kb on - strand, within A4249_RS00220at 38.714 kb on - strand, within A4249_RS00220at 38.748 kb on + strandat 38.847 kb on + strandat 38.848 kb on - strandat 38.848 kb on - strandat 38.848 kb on - strandat 38.927 kb on + strandat 38.927 kb on + strandat 38.927 kb on + strandat 38.927 kb on + strandat 38.927 kb on + strandat 38.928 kb on - strandat 38.928 kb on - strandat 38.928 kb on - strandat 38.928 kb on - strandat 38.928 kb on - strandat 38.928 kb on - strandat 38.928 kb on - strandat 38.929 kb on - strandat 39.035 kb on + strand, within A4249_RS00225at 39.095 kb on + strand, within A4249_RS00225at 39.095 kb on + strand, within A4249_RS00225at 39.095 kb on + strand, within A4249_RS00225at 39.095 kb on + strand, within A4249_RS00225at 39.095 kb on + strand, within A4249_RS00225at 39.095 kb on + strand, within A4249_RS00225at 39.096 kb on - strand, within A4249_RS00225at 39.096 kb on - strand, within A4249_RS00225at 39.096 kb on - strand, within A4249_RS00225at 39.096 kb on - strand, within A4249_RS00225at 39.384 kb on + strandat 39.384 kb on + strandat 39.384 kb on + strandat 39.384 kb on + strandat 39.384 kb on + strandat 39.384 kb on + strandat 39.384 kb on + strandat 39.384 kb on + strandat 39.384 kb on + strandat 39.384 kb on + strandat 39.384 kb on + strandat 39.385 kb on - strandat 39.385 kb on - strandat 39.385 kb on - strandat 39.485 kb on + strandat 39.485 kb on + strandat 39.486 kb on - strandat 39.486 kb on - strandat 39.486 kb on - strandat 39.486 kb on - strandat 39.486 kb on - strandat 39.496 kb on + strandat 39.496 kb on + strandat 39.512 kb on + strandat 39.512 kb on + strandat 39.707 kb on + strand, within A4249_RS00230at 39.731 kb on + strand, within A4249_RS00230at 39.731 kb on + strand, within A4249_RS00230at 39.731 kb on + strand, within A4249_RS00230at 39.732 kb on - strand, within A4249_RS00230at 39.732 kb on - strand, within A4249_RS00230at 39.732 kb on - strand, within A4249_RS00230at 39.732 kb on - strand, within A4249_RS00230at 39.732 kb on - strand, within A4249_RS00230at 39.732 kb on - strand, within A4249_RS00230at 39.732 kb on - strand, within A4249_RS00230at 39.732 kb on - strand, within A4249_RS00230at 39.732 kb on - strand, within A4249_RS00230at 39.732 kb on - strand, within A4249_RS00230at 39.732 kb on - strand, within A4249_RS00230at 39.794 kb on + strand, within A4249_RS00230at 39.842 kb on + strand, within A4249_RS00230at 39.842 kb on + strand, within A4249_RS00230at 39.843 kb on - strand, within A4249_RS00230at 40.292 kb on + strandat 40.292 kb on + strandat 40.292 kb on + strandat 40.293 kb on - strandat 40.293 kb on - strandat 40.293 kb on - strandat 40.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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38,119 + A4249_RS00215 0.82 -2.6
38,119 + A4249_RS00215 0.82 -1.0
38,119 + A4249_RS00215 0.82 -1.0
38,120 - A4249_RS00215 0.82 -1.1
38,120 - A4249_RS00215 0.82 +0.1
38,120 - A4249_RS00215 0.82 -2.5
38,161 + A4249_RS00215 0.84 +0.1
38,330 - -0.1
38,365 + -1.6
38,365 + -0.6
38,366 - -2.0
38,366 - -1.2
38,366 - -2.4
38,366 - +0.6
38,419 + +0.4
38,419 + -1.0
38,419 + -0.1
38,420 - -1.5
38,420 - -0.2
38,428 + -0.4
38,428 + +0.5
38,488 + A4249_RS00220 0.17 +0.4
38,488 + A4249_RS00220 0.17 +0.3
38,488 + A4249_RS00220 0.17 +0.6
38,488 + A4249_RS00220 0.17 -0.3
38,488 + A4249_RS00220 0.17 -0.2
38,488 + A4249_RS00220 0.17 -0.1
38,489 - A4249_RS00220 0.18 -0.7
38,489 - A4249_RS00220 0.18 -0.0
38,489 - A4249_RS00220 0.18 -0.0
38,489 - A4249_RS00220 0.18 +0.3
38,572 + A4249_RS00220 0.41 -0.4
38,572 + A4249_RS00220 0.41 +0.1
38,572 + A4249_RS00220 0.41 -0.2
38,572 + A4249_RS00220 0.41 +0.2
38,572 + A4249_RS00220 0.41 -0.8
38,572 + A4249_RS00220 0.41 +0.0
38,573 - A4249_RS00220 0.41 -0.3
38,573 - A4249_RS00220 0.41 -0.2
38,573 - A4249_RS00220 0.41 +0.2
38,573 - A4249_RS00220 0.41 +0.8
38,573 - A4249_RS00220 0.41 -1.1
38,573 - A4249_RS00220 0.41 -0.2
38,573 - A4249_RS00220 0.41 -0.8
38,578 + A4249_RS00220 0.43 +0.2
38,578 + A4249_RS00220 0.43 +0.1
38,578 + A4249_RS00220 0.43 +0.7
38,578 + A4249_RS00220 0.43 +0.1
38,578 + A4249_RS00220 0.43 -0.2
38,578 + A4249_RS00220 0.43 +0.7
38,578 + A4249_RS00220 0.43 +0.2
38,578 + A4249_RS00220 0.43 -0.7
38,578 + A4249_RS00220 0.43 -0.5
38,579 - A4249_RS00220 0.43 -0.5
38,579 - A4249_RS00220 0.43 +0.1
38,639 + A4249_RS00220 0.60 +1.6
38,639 + A4249_RS00220 0.60 -0.5
38,639 + A4249_RS00220 0.60 +0.0
38,640 - A4249_RS00220 0.60 +0.4
38,640 - A4249_RS00220 0.60 -0.9
38,714 - A4249_RS00220 0.81 +0.2
38,748 + +0.2
38,847 + +0.4
38,848 - +0.7
38,848 - -1.8
38,848 - -0.1
38,927 + -1.4
38,927 + +0.1
38,927 + -0.5
38,927 + +0.3
38,927 + +0.2
38,928 - +0.1
38,928 - -0.2
38,928 - -1.0
38,928 - +0.2
38,928 - +0.1
38,928 - +0.1
38,928 - +0.2
38,929 - +0.3
39,035 + A4249_RS00225 0.22 -0.4
39,095 + A4249_RS00225 0.35 -0.4
39,095 + A4249_RS00225 0.35 +0.3
39,095 + A4249_RS00225 0.35 +0.5
39,095 + A4249_RS00225 0.35 -0.9
39,095 + A4249_RS00225 0.35 -1.6
39,095 + A4249_RS00225 0.35 +0.2
39,096 - A4249_RS00225 0.36 +0.1
39,096 - A4249_RS00225 0.36 -2.1
39,096 - A4249_RS00225 0.36 -0.2
39,096 - A4249_RS00225 0.36 -1.6
39,384 + +0.7
39,384 + +0.5
39,384 + -1.2
39,384 + +0.2
39,384 + +0.2
39,384 + -0.4
39,384 + +0.9
39,384 + -0.2
39,384 + -1.3
39,384 + -0.3
39,384 + -0.3
39,385 - +0.8
39,385 - +0.4
39,385 - +0.4
39,485 + -0.8
39,485 + -0.4
39,486 - +1.2
39,486 - -0.2
39,486 - -0.3
39,486 - -0.5
39,486 - -2.1
39,496 + -0.2
39,496 + -0.3
39,512 + +0.4
39,512 + -0.4
39,707 + A4249_RS00230 0.26 +0.2
39,731 + A4249_RS00230 0.28 -0.4
39,731 + A4249_RS00230 0.28 -2.8
39,731 + A4249_RS00230 0.28 +0.3
39,732 - A4249_RS00230 0.29 +1.1
39,732 - A4249_RS00230 0.29 -0.8
39,732 - A4249_RS00230 0.29 +0.1
39,732 - A4249_RS00230 0.29 -0.8
39,732 - A4249_RS00230 0.29 +0.1
39,732 - A4249_RS00230 0.29 +0.4
39,732 - A4249_RS00230 0.29 -0.1
39,732 - A4249_RS00230 0.29 +0.7
39,732 - A4249_RS00230 0.29 -0.1
39,732 - A4249_RS00230 0.29 +0.4
39,732 - A4249_RS00230 0.29 -2.3
39,794 + A4249_RS00230 0.36 +0.4
39,842 + A4249_RS00230 0.41 -0.9
39,842 + A4249_RS00230 0.41 +0.3
39,843 - A4249_RS00230 0.41 -1.2
40,292 + -0.4
40,292 + -1.0
40,292 + -0.8
40,293 - +0.1
40,293 - +0.4
40,293 - +0.1
40,293 - -0.2

Or see this region's nucleotide sequence