Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_04885 and OLJFJH_04890 are separated by 428 nucleotides OLJFJH_04890 and OLJFJH_04895 are separated by 308 nucleotides OLJFJH_04895 and OLJFJH_04900 are separated by 98 nucleotides
OLJFJH_04885: OLJFJH_04885 - hypothetical protein, at 967,624 to 968,082
_04885
OLJFJH_04890: OLJFJH_04890 - kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 968,511 to 970,178
_04890
OLJFJH_04895: OLJFJH_04895 - organic hydroperoxide resistance protein, at 970,487 to 970,915
_04895
OLJFJH_04900: OLJFJH_04900 - MarR family transcriptional regulator, at 971,014 to 971,481
_04900
Position (kb) 968
969
970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 967.571 kb on + strand at 967.571 kb on + strand at 967.572 kb on - strand at 967.764 kb on + strand, within OLJFJH_04885 at 967.866 kb on + strand, within OLJFJH_04885 at 967.869 kb on - strand, within OLJFJH_04885 at 967.912 kb on + strand, within OLJFJH_04885 at 967.996 kb on + strand, within OLJFJH_04885 at 967.997 kb on - strand, within OLJFJH_04885 at 967.997 kb on - strand, within OLJFJH_04885 at 967.997 kb on - strand, within OLJFJH_04885 at 968.057 kb on - strand at 968.134 kb on - strand at 968.377 kb on + strand at 968.416 kb on + strand at 968.417 kb on - strand at 968.531 kb on + strand at 968.531 kb on + strand at 968.534 kb on + strand at 968.534 kb on + strand at 968.535 kb on - strand at 968.545 kb on - strand at 968.640 kb on + strand at 968.641 kb on - strand at 968.641 kb on - strand at 968.660 kb on + strand at 968.660 kb on + strand at 968.680 kb on + strand, within OLJFJH_04890 at 968.680 kb on + strand, within OLJFJH_04890 at 968.680 kb on + strand, within OLJFJH_04890 at 968.680 kb on + strand, within OLJFJH_04890 at 968.680 kb on + strand, within OLJFJH_04890 at 968.680 kb on + strand, within OLJFJH_04890 at 968.681 kb on - strand, within OLJFJH_04890 at 968.681 kb on - strand, within OLJFJH_04890 at 968.681 kb on - strand, within OLJFJH_04890 at 968.701 kb on - strand, within OLJFJH_04890 at 968.736 kb on - strand, within OLJFJH_04890 at 968.763 kb on - strand, within OLJFJH_04890 at 968.860 kb on + strand, within OLJFJH_04890 at 968.879 kb on - strand, within OLJFJH_04890 at 968.925 kb on - strand, within OLJFJH_04890 at 968.977 kb on + strand, within OLJFJH_04890 at 968.978 kb on - strand, within OLJFJH_04890 at 968.978 kb on - strand, within OLJFJH_04890 at 969.000 kb on + strand, within OLJFJH_04890 at 969.066 kb on - strand, within OLJFJH_04890 at 969.089 kb on + strand, within OLJFJH_04890 at 969.089 kb on + strand, within OLJFJH_04890 at 969.089 kb on + strand, within OLJFJH_04890 at 969.089 kb on + strand, within OLJFJH_04890 at 969.090 kb on - strand, within OLJFJH_04890 at 969.188 kb on + strand, within OLJFJH_04890 at 969.188 kb on + strand, within OLJFJH_04890 at 969.188 kb on + strand, within OLJFJH_04890 at 969.433 kb on + strand, within OLJFJH_04890 at 969.433 kb on + strand, within OLJFJH_04890 at 969.433 kb on + strand, within OLJFJH_04890 at 969.433 kb on + strand, within OLJFJH_04890 at 969.433 kb on + strand, within OLJFJH_04890 at 969.433 kb on + strand, within OLJFJH_04890 at 969.434 kb on - strand, within OLJFJH_04890 at 969.434 kb on - strand, within OLJFJH_04890 at 969.434 kb on - strand, within OLJFJH_04890 at 969.437 kb on + strand, within OLJFJH_04890 at 969.437 kb on + strand, within OLJFJH_04890 at 969.444 kb on + strand, within OLJFJH_04890 at 969.464 kb on - strand, within OLJFJH_04890 at 969.507 kb on - strand, within OLJFJH_04890 at 969.517 kb on + strand, within OLJFJH_04890 at 969.526 kb on + strand, within OLJFJH_04890 at 969.527 kb on - strand, within OLJFJH_04890 at 969.568 kb on + strand, within OLJFJH_04890 at 969.569 kb on - strand, within OLJFJH_04890 at 969.569 kb on - strand, within OLJFJH_04890 at 969.612 kb on - strand, within OLJFJH_04890 at 969.612 kb on - strand, within OLJFJH_04890 at 969.612 kb on - strand, within OLJFJH_04890 at 969.772 kb on - strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.907 kb on + strand, within OLJFJH_04890 at 969.908 kb on - strand, within OLJFJH_04890 at 969.908 kb on - strand, within OLJFJH_04890 at 969.908 kb on - strand, within OLJFJH_04890 at 969.908 kb on - strand, within OLJFJH_04890 at 969.911 kb on - strand, within OLJFJH_04890 at 970.090 kb on + strand at 970.123 kb on + strand at 970.124 kb on - strand at 970.124 kb on - strand at 970.186 kb on + strand at 970.186 kb on + strand at 970.248 kb on + strand at 970.249 kb on - strand at 970.294 kb on + strand at 970.347 kb on + strand at 970.351 kb on + strand at 970.357 kb on + strand at 970.357 kb on + strand at 970.358 kb on - strand at 970.358 kb on - strand at 970.358 kb on - strand at 970.358 kb on - strand at 970.413 kb on - strand at 970.437 kb on - strand at 970.472 kb on + strand at 970.472 kb on + strand at 970.472 kb on + strand at 970.472 kb on + strand at 970.488 kb on + strand at 970.488 kb on + strand at 970.488 kb on + strand at 970.489 kb on - strand at 970.489 kb on - strand at 970.535 kb on - strand, within OLJFJH_04895 at 970.535 kb on - strand, within OLJFJH_04895 at 970.552 kb on + strand, within OLJFJH_04895 at 970.812 kb on - strand, within OLJFJH_04895 at 970.891 kb on + strand at 970.915 kb on + strand at 970.915 kb on + strand at 970.915 kb on + strand at 970.916 kb on - strand at 970.980 kb on + strand at 970.980 kb on + strand at 970.985 kb on - strand at 970.985 kb on - strand at 970.988 kb on + strand at 970.988 kb on + strand at 970.994 kb on - strand at 971.022 kb on + strand at 971.022 kb on + strand at 971.036 kb on - strand at 971.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-5 remove 967,571 + -0.2 967,571 + -1.3 967,572 - -0.0 967,764 + OLJFJH_04885 0.31 +1.1 967,866 + OLJFJH_04885 0.53 +0.3 967,869 - OLJFJH_04885 0.53 -0.5 967,912 + OLJFJH_04885 0.63 -1.1 967,996 + OLJFJH_04885 0.81 -0.6 967,997 - OLJFJH_04885 0.81 -0.1 967,997 - OLJFJH_04885 0.81 +0.4 967,997 - OLJFJH_04885 0.81 -0.0 968,057 - -0.1 968,134 - -1.5 968,377 + +0.0 968,416 + -0.2 968,417 - +0.6 968,531 + -0.3 968,531 + -0.8 968,534 + -0.1 968,534 + -0.5 968,535 - +0.7 968,545 - -0.2 968,640 + -0.7 968,641 - -0.2 968,641 - -2.0 968,660 + -0.2 968,660 + -0.3 968,680 + OLJFJH_04890 0.10 -0.3 968,680 + OLJFJH_04890 0.10 +0.1 968,680 + OLJFJH_04890 0.10 -0.2 968,680 + OLJFJH_04890 0.10 +1.6 968,680 + OLJFJH_04890 0.10 -0.1 968,680 + OLJFJH_04890 0.10 -0.3 968,681 - OLJFJH_04890 0.10 -0.2 968,681 - OLJFJH_04890 0.10 -0.2 968,681 - OLJFJH_04890 0.10 +0.2 968,701 - OLJFJH_04890 0.11 +1.5 968,736 - OLJFJH_04890 0.13 -0.5 968,763 - OLJFJH_04890 0.15 -1.1 968,860 + OLJFJH_04890 0.21 +0.3 968,879 - OLJFJH_04890 0.22 +0.5 968,925 - OLJFJH_04890 0.25 +0.9 968,977 + OLJFJH_04890 0.28 +1.1 968,978 - OLJFJH_04890 0.28 -0.1 968,978 - OLJFJH_04890 0.28 +0.4 969,000 + OLJFJH_04890 0.29 -0.5 969,066 - OLJFJH_04890 0.33 -0.8 969,089 + OLJFJH_04890 0.35 -0.7 969,089 + OLJFJH_04890 0.35 +1.1 969,089 + OLJFJH_04890 0.35 +1.2 969,089 + OLJFJH_04890 0.35 +0.9 969,090 - OLJFJH_04890 0.35 -3.1 969,188 + OLJFJH_04890 0.41 -0.6 969,188 + OLJFJH_04890 0.41 +1.5 969,188 + OLJFJH_04890 0.41 +0.9 969,433 + OLJFJH_04890 0.55 -0.3 969,433 + OLJFJH_04890 0.55 -0.1 969,433 + OLJFJH_04890 0.55 -0.6 969,433 + OLJFJH_04890 0.55 +3.9 969,433 + OLJFJH_04890 0.55 -0.1 969,433 + OLJFJH_04890 0.55 -0.5 969,434 - OLJFJH_04890 0.55 +0.5 969,434 - OLJFJH_04890 0.55 -1.0 969,434 - OLJFJH_04890 0.55 +0.2 969,437 + OLJFJH_04890 0.56 +0.3 969,437 + OLJFJH_04890 0.56 +0.9 969,444 + OLJFJH_04890 0.56 +0.2 969,464 - OLJFJH_04890 0.57 +1.6 969,507 - OLJFJH_04890 0.60 -0.9 969,517 + OLJFJH_04890 0.60 -0.8 969,526 + OLJFJH_04890 0.61 -0.2 969,527 - OLJFJH_04890 0.61 -0.2 969,568 + OLJFJH_04890 0.63 -0.1 969,569 - OLJFJH_04890 0.63 -0.5 969,569 - OLJFJH_04890 0.63 -0.1 969,612 - OLJFJH_04890 0.66 -0.6 969,612 - OLJFJH_04890 0.66 +0.3 969,612 - OLJFJH_04890 0.66 +0.2 969,772 - OLJFJH_04890 0.76 -0.8 969,907 + OLJFJH_04890 0.84 +0.7 969,907 + OLJFJH_04890 0.84 -0.8 969,907 + OLJFJH_04890 0.84 +0.9 969,907 + OLJFJH_04890 0.84 -0.6 969,907 + OLJFJH_04890 0.84 +0.4 969,907 + OLJFJH_04890 0.84 -0.0 969,907 + OLJFJH_04890 0.84 +0.1 969,907 + OLJFJH_04890 0.84 +2.4 969,907 + OLJFJH_04890 0.84 +0.1 969,908 - OLJFJH_04890 0.84 -0.1 969,908 - OLJFJH_04890 0.84 +0.1 969,908 - OLJFJH_04890 0.84 +0.2 969,908 - OLJFJH_04890 0.84 +1.5 969,911 - OLJFJH_04890 0.84 +0.9 970,090 + -0.9 970,123 + -0.4 970,124 - -0.5 970,124 - -1.2 970,186 + +0.6 970,186 + +0.7 970,248 + -1.8 970,249 - -0.7 970,294 + +1.6 970,347 + +0.2 970,351 + +0.2 970,357 + -0.6 970,357 + -1.9 970,358 - -0.6 970,358 - +0.1 970,358 - +1.7 970,358 - +0.5 970,413 - -0.3 970,437 - +1.0 970,472 + +0.0 970,472 + +1.4 970,472 + -0.2 970,472 + -0.4 970,488 + -0.5 970,488 + +1.8 970,488 + -1.6 970,489 - -0.8 970,489 - -1.4 970,535 - OLJFJH_04895 0.11 -0.5 970,535 - OLJFJH_04895 0.11 -0.0 970,552 + OLJFJH_04895 0.15 -0.8 970,812 - OLJFJH_04895 0.76 +0.8 970,891 + +0.2 970,915 + +0.9 970,915 + -0.2 970,915 + -1.1 970,916 - +0.4 970,980 + +0.1 970,980 + +0.1 970,985 - -0.2 970,985 - -0.3 970,988 + +0.3 970,988 + +0.0 970,994 - -1.8 971,022 + +2.8 971,022 + +0.7 971,036 - +0.4 971,036 - -0.1
Or see this region's nucleotide sequence