Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS17005

Experiment: Uracil 0.8921 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS10735 and A4249_RS17005 are separated by 29 nucleotidesA4249_RS17005 and A4249_RS17010 are separated by 34 nucleotidesA4249_RS17010 and A4249_RS10745 are separated by 90 nucleotidesA4249_RS10745 and A4249_RS10750 are separated by 81 nucleotides A4249_RS10735: A4249_RS10735 - phosphogluconate dehydratase, at 2,157,489 to 2,159,378 _RS10735 A4249_RS17005: A4249_RS17005 - glucokinase, at 2,159,408 to 2,159,950 _RS17005 A4249_RS17010: A4249_RS17010 - glucokinase, at 2,159,985 to 2,160,395 _RS17010 A4249_RS10745: A4249_RS10745 - hypothetical protein, at 2,160,486 to 2,160,791 _RS10745 A4249_RS10750: A4249_RS10750 - hypothetical protein, at 2,160,873 to 2,161,235 _RS10750 Position (kb) 2159 2160Strain fitness (log2 ratio) -1 0 1at 2159.377 kb on - strandat 2159.377 kb on - strandat 2159.377 kb on - strandat 2159.377 kb on - strandat 2159.543 kb on + strand, within A4249_RS17005at 2159.543 kb on + strand, within A4249_RS17005at 2159.544 kb on - strand, within A4249_RS17005at 2160.210 kb on + strand, within A4249_RS17010at 2160.210 kb on + strand, within A4249_RS17010at 2160.210 kb on + strand, within A4249_RS17010at 2160.210 kb on + strand, within A4249_RS17010at 2160.210 kb on + strand, within A4249_RS17010at 2160.211 kb on - strand, within A4249_RS17010at 2160.211 kb on - strand, within A4249_RS17010at 2160.211 kb on - strand, within A4249_RS17010at 2160.303 kb on + strand, within A4249_RS17010at 2160.303 kb on + strand, within A4249_RS17010at 2160.303 kb on + strand, within A4249_RS17010at 2160.304 kb on - strand, within A4249_RS17010at 2160.304 kb on - strand, within A4249_RS17010at 2160.304 kb on - strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.305 kb on + strand, within A4249_RS17010at 2160.306 kb on - strand, within A4249_RS17010at 2160.306 kb on - strand, within A4249_RS17010at 2160.306 kb on - strand, within A4249_RS17010at 2160.306 kb on - strand, within A4249_RS17010at 2160.306 kb on - strand, within A4249_RS17010at 2160.306 kb on - strand, within A4249_RS17010at 2160.449 kb on - strandat 2160.469 kb on + strandat 2160.469 kb on + strandat 2160.469 kb on + strandat 2160.470 kb on - strandat 2160.470 kb on - strandat 2160.470 kb on - strandat 2160.482 kb on + strandat 2160.762 kb on - strandat 2160.789 kb on + strandat 2160.789 kb on + strandat 2160.790 kb on - strandat 2160.790 kb on - strandat 2160.808 kb on - strandat 2160.817 kb on + strandat 2160.818 kb on - strandat 2160.920 kb on + strand, within A4249_RS10750at 2160.921 kb on - strand, within A4249_RS10750at 2160.921 kb on - strand, within A4249_RS10750at 2160.921 kb on - strand, within A4249_RS10750at 2160.921 kb on - strand, within A4249_RS10750at 2160.921 kb on - strand, within A4249_RS10750at 2160.921 kb on - strand, within A4249_RS10750at 2160.921 kb on - strand, within A4249_RS10750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
remove
2,159,377 - +0.9
2,159,377 - +0.1
2,159,377 - +0.1
2,159,377 - +0.0
2,159,543 + A4249_RS17005 0.25 +0.5
2,159,543 + A4249_RS17005 0.25 +0.4
2,159,544 - A4249_RS17005 0.25 +0.4
2,160,210 + A4249_RS17010 0.55 +0.3
2,160,210 + A4249_RS17010 0.55 -0.0
2,160,210 + A4249_RS17010 0.55 +0.2
2,160,210 + A4249_RS17010 0.55 -0.1
2,160,210 + A4249_RS17010 0.55 +0.6
2,160,211 - A4249_RS17010 0.55 +0.3
2,160,211 - A4249_RS17010 0.55 +0.4
2,160,211 - A4249_RS17010 0.55 -0.5
2,160,303 + A4249_RS17010 0.77 +0.4
2,160,303 + A4249_RS17010 0.77 +0.7
2,160,303 + A4249_RS17010 0.77 +0.1
2,160,304 - A4249_RS17010 0.78 +0.3
2,160,304 - A4249_RS17010 0.78 +0.2
2,160,304 - A4249_RS17010 0.78 +0.6
2,160,305 + A4249_RS17010 0.78 +0.2
2,160,305 + A4249_RS17010 0.78 +1.4
2,160,305 + A4249_RS17010 0.78 -0.0
2,160,305 + A4249_RS17010 0.78 +0.7
2,160,305 + A4249_RS17010 0.78 +0.3
2,160,305 + A4249_RS17010 0.78 +0.1
2,160,305 + A4249_RS17010 0.78 -0.0
2,160,305 + A4249_RS17010 0.78 +0.6
2,160,305 + A4249_RS17010 0.78 +0.6
2,160,305 + A4249_RS17010 0.78 +0.4
2,160,306 - A4249_RS17010 0.78 -0.3
2,160,306 - A4249_RS17010 0.78 -0.2
2,160,306 - A4249_RS17010 0.78 +0.5
2,160,306 - A4249_RS17010 0.78 +0.3
2,160,306 - A4249_RS17010 0.78 -0.1
2,160,306 - A4249_RS17010 0.78 +1.7
2,160,449 - -0.7
2,160,469 + +0.1
2,160,469 + +0.4
2,160,469 + -0.9
2,160,470 - +0.2
2,160,470 - -0.5
2,160,470 - -0.0
2,160,482 + -0.3
2,160,762 - +0.1
2,160,789 + -0.5
2,160,789 + -0.3
2,160,790 - +0.2
2,160,790 - +0.2
2,160,808 - +0.2
2,160,817 + -0.5
2,160,818 - -0.1
2,160,920 + A4249_RS10750 0.13 -0.5
2,160,921 - A4249_RS10750 0.13 +0.5
2,160,921 - A4249_RS10750 0.13 +0.6
2,160,921 - A4249_RS10750 0.13 -0.2
2,160,921 - A4249_RS10750 0.13 -1.4
2,160,921 - A4249_RS10750 0.13 -1.2
2,160,921 - A4249_RS10750 0.13 -0.2
2,160,921 - A4249_RS10750 0.13 -0.3

Or see this region's nucleotide sequence