Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16845

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS16835 and A4249_RS16840 are separated by 3 nucleotidesA4249_RS16840 and A4249_RS16845 overlap by 4 nucleotidesA4249_RS16845 and A4249_RS15915 overlap by 4 nucleotidesA4249_RS15915 and A4249_RS15920 are separated by 141 nucleotides A4249_RS16835: A4249_RS16835 - cell envelope integrity protein TolA, at 3,209,707 to 3,210,585 _RS16835 A4249_RS16840: A4249_RS16840 - hypothetical protein, at 3,210,589 to 3,210,750 _RS16840 A4249_RS16845: A4249_RS16845 - hypothetical protein, at 3,210,747 to 3,211,022 _RS16845 A4249_RS15915: A4249_RS15915 - hypothetical protein, at 3,211,019 to 3,211,252 _RS15915 A4249_RS15920: A4249_RS15920 - Tol-Pal system beta propeller repeat protein TolB, at 3,211,394 to 3,212,758 _RS15920 Position (kb) 3210 3211 3212Strain fitness (log2 ratio) -2 -1 0 1at 3210.598 kb on + strandat 3210.598 kb on + strandat 3210.598 kb on + strandat 3210.598 kb on + strandat 3210.599 kb on - strandat 3210.599 kb on - strandat 3210.599 kb on - strandat 3210.599 kb on - strandat 3210.599 kb on - strandat 3210.600 kb on + strandat 3210.600 kb on + strandat 3210.600 kb on + strandat 3210.600 kb on + strandat 3210.600 kb on + strandat 3210.600 kb on + strandat 3210.601 kb on - strandat 3210.601 kb on - strandat 3210.601 kb on - strandat 3210.601 kb on - strandat 3210.601 kb on - strandat 3210.601 kb on - strandat 3210.601 kb on - strandat 3210.601 kb on - strandat 3210.601 kb on - strandat 3210.701 kb on + strand, within A4249_RS16840at 3210.701 kb on + strand, within A4249_RS16840at 3210.701 kb on + strand, within A4249_RS16840at 3210.701 kb on + strand, within A4249_RS16840at 3210.701 kb on + strand, within A4249_RS16840at 3210.701 kb on + strand, within A4249_RS16840at 3210.701 kb on + strand, within A4249_RS16840at 3210.701 kb on + strand, within A4249_RS16840at 3210.701 kb on + strand, within A4249_RS16840at 3210.702 kb on - strand, within A4249_RS16840at 3210.702 kb on - strand, within A4249_RS16840at 3210.702 kb on - strand, within A4249_RS16840at 3210.702 kb on - strand, within A4249_RS16840at 3210.702 kb on - strand, within A4249_RS16840at 3210.702 kb on - strand, within A4249_RS16840at 3210.702 kb on - strand, within A4249_RS16840at 3210.702 kb on - strand, within A4249_RS16840at 3210.702 kb on - strand, within A4249_RS16840at 3210.702 kb on - strand, within A4249_RS16840at 3210.702 kb on - strand, within A4249_RS16840at 3210.702 kb on - strand, within A4249_RS16840at 3210.702 kb on - strand, within A4249_RS16840at 3210.702 kb on - strand, within A4249_RS16840at 3210.705 kb on + strand, within A4249_RS16840at 3210.705 kb on + strand, within A4249_RS16840at 3210.705 kb on + strand, within A4249_RS16840at 3210.705 kb on + strand, within A4249_RS16840at 3210.706 kb on - strand, within A4249_RS16840at 3210.706 kb on - strand, within A4249_RS16840at 3210.706 kb on - strand, within A4249_RS16840at 3210.706 kb on - strand, within A4249_RS16840at 3210.726 kb on + strand, within A4249_RS16840at 3210.727 kb on - strand, within A4249_RS16840at 3210.727 kb on - strand, within A4249_RS16840at 3210.727 kb on - strand, within A4249_RS16840at 3210.860 kb on - strand, within A4249_RS16845at 3210.860 kb on - strand, within A4249_RS16845at 3210.969 kb on - strand, within A4249_RS16845at 3211.243 kb on + strandat 3211.243 kb on + strandat 3211.243 kb on + strandat 3211.244 kb on - strandat 3211.244 kb on - strandat 3211.244 kb on - strandat 3211.258 kb on + strandat 3211.258 kb on + strandat 3211.259 kb on - strandat 3211.259 kb on - strandat 3211.263 kb on + strandat 3211.263 kb on + strandat 3211.264 kb on - strandat 3211.264 kb on - strandat 3211.380 kb on + strandat 3211.380 kb on + strandat 3211.380 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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3,210,598 + -0.5
3,210,598 + +0.1
3,210,598 + +0.2
3,210,598 + -0.2
3,210,599 - -0.3
3,210,599 - -0.6
3,210,599 - -0.2
3,210,599 - -1.2
3,210,599 - +0.7
3,210,600 + +0.9
3,210,600 + +1.1
3,210,600 + +0.1
3,210,600 + +0.6
3,210,600 + +0.3
3,210,600 + +1.6
3,210,601 - +0.5
3,210,601 - +0.4
3,210,601 - -0.1
3,210,601 - +0.7
3,210,601 - +0.4
3,210,601 - +0.4
3,210,601 - +0.2
3,210,601 - +0.2
3,210,601 - +0.1
3,210,701 + A4249_RS16840 0.69 -0.6
3,210,701 + A4249_RS16840 0.69 +0.0
3,210,701 + A4249_RS16840 0.69 -0.5
3,210,701 + A4249_RS16840 0.69 +0.5
3,210,701 + A4249_RS16840 0.69 -0.2
3,210,701 + A4249_RS16840 0.69 +0.2
3,210,701 + A4249_RS16840 0.69 -0.2
3,210,701 + A4249_RS16840 0.69 +0.2
3,210,701 + A4249_RS16840 0.69 +0.4
3,210,702 - A4249_RS16840 0.70 -0.7
3,210,702 - A4249_RS16840 0.70 +0.1
3,210,702 - A4249_RS16840 0.70 +0.3
3,210,702 - A4249_RS16840 0.70 -0.1
3,210,702 - A4249_RS16840 0.70 -0.0
3,210,702 - A4249_RS16840 0.70 -0.7
3,210,702 - A4249_RS16840 0.70 +0.2
3,210,702 - A4249_RS16840 0.70 +0.5
3,210,702 - A4249_RS16840 0.70 -0.7
3,210,702 - A4249_RS16840 0.70 -0.0
3,210,702 - A4249_RS16840 0.70 +0.4
3,210,702 - A4249_RS16840 0.70 +1.0
3,210,702 - A4249_RS16840 0.70 -0.3
3,210,702 - A4249_RS16840 0.70 +0.3
3,210,705 + A4249_RS16840 0.72 +0.4
3,210,705 + A4249_RS16840 0.72 +0.3
3,210,705 + A4249_RS16840 0.72 +0.3
3,210,705 + A4249_RS16840 0.72 -0.2
3,210,706 - A4249_RS16840 0.72 -0.1
3,210,706 - A4249_RS16840 0.72 -0.4
3,210,706 - A4249_RS16840 0.72 -0.5
3,210,706 - A4249_RS16840 0.72 +0.4
3,210,726 + A4249_RS16840 0.85 +0.2
3,210,727 - A4249_RS16840 0.85 +1.0
3,210,727 - A4249_RS16840 0.85 +0.0
3,210,727 - A4249_RS16840 0.85 +0.3
3,210,860 - A4249_RS16845 0.41 +0.3
3,210,860 - A4249_RS16845 0.41 +0.4
3,210,969 - A4249_RS16845 0.80 +0.5
3,211,243 + -0.1
3,211,243 + +0.2
3,211,243 + -0.6
3,211,244 - +0.9
3,211,244 - -0.2
3,211,244 - -0.8
3,211,258 + -0.7
3,211,258 + -0.2
3,211,259 - -0.4
3,211,259 - +0.4
3,211,263 + +0.6
3,211,263 + -0.1
3,211,264 - -1.8
3,211,264 - -0.4
3,211,380 + -0.1
3,211,380 + +0.0
3,211,380 + +1.2

Or see this region's nucleotide sequence