Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08765

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08750 and A4249_RS08755 are separated by 41 nucleotidesA4249_RS08755 and A4249_RS08760 are separated by 61 nucleotidesA4249_RS08760 and A4249_RS08765 are separated by 41 nucleotidesA4249_RS08765 and A4249_RS08770 are separated by 135 nucleotides A4249_RS08750: A4249_RS08750 - lysine--tRNA ligase, at 1,754,861 to 1,756,543 _RS08750 A4249_RS08755: A4249_RS08755 - RidA family protein, at 1,756,585 to 1,756,929 _RS08755 A4249_RS08760: A4249_RS08760 - hypothetical protein, at 1,756,991 to 1,757,467 _RS08760 A4249_RS08765: A4249_RS08765 - Lrp/AsnC family transcriptional regulator, at 1,757,509 to 1,757,958 _RS08765 A4249_RS08770: A4249_RS08770 - D-amino acid dehydrogenase, at 1,758,094 to 1,759,380 _RS08770 Position (kb) 1757 1758Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1756.603 kb on + strandat 1756.603 kb on + strandat 1756.603 kb on + strandat 1756.603 kb on + strandat 1756.603 kb on + strandat 1756.603 kb on + strandat 1756.604 kb on - strandat 1756.604 kb on - strandat 1756.622 kb on + strand, within A4249_RS08755at 1756.622 kb on + strand, within A4249_RS08755at 1756.622 kb on + strand, within A4249_RS08755at 1756.622 kb on + strand, within A4249_RS08755at 1756.623 kb on - strand, within A4249_RS08755at 1756.623 kb on - strand, within A4249_RS08755at 1756.623 kb on - strand, within A4249_RS08755at 1756.623 kb on - strand, within A4249_RS08755at 1756.623 kb on - strand, within A4249_RS08755at 1756.623 kb on - strand, within A4249_RS08755at 1756.623 kb on - strand, within A4249_RS08755at 1756.623 kb on - strand, within A4249_RS08755at 1756.738 kb on + strand, within A4249_RS08755at 1756.738 kb on + strand, within A4249_RS08755at 1756.738 kb on + strand, within A4249_RS08755at 1756.738 kb on + strand, within A4249_RS08755at 1756.739 kb on - strand, within A4249_RS08755at 1756.739 kb on - strand, within A4249_RS08755at 1756.739 kb on - strand, within A4249_RS08755at 1756.865 kb on + strand, within A4249_RS08755at 1756.865 kb on + strand, within A4249_RS08755at 1756.865 kb on + strand, within A4249_RS08755at 1756.865 kb on + strand, within A4249_RS08755at 1756.865 kb on + strand, within A4249_RS08755at 1756.865 kb on + strand, within A4249_RS08755at 1756.865 kb on + strand, within A4249_RS08755at 1756.866 kb on - strand, within A4249_RS08755at 1756.866 kb on - strand, within A4249_RS08755at 1756.866 kb on - strand, within A4249_RS08755at 1756.866 kb on - strand, within A4249_RS08755at 1756.866 kb on - strand, within A4249_RS08755at 1756.866 kb on - strand, within A4249_RS08755at 1756.866 kb on - strand, within A4249_RS08755at 1756.934 kb on + strandat 1756.961 kb on + strandat 1756.961 kb on + strandat 1756.961 kb on + strandat 1756.962 kb on - strandat 1756.962 kb on - strandat 1756.962 kb on - strandat 1757.127 kb on + strand, within A4249_RS08760at 1757.127 kb on + strand, within A4249_RS08760at 1757.127 kb on + strand, within A4249_RS08760at 1757.127 kb on + strand, within A4249_RS08760at 1757.128 kb on - strand, within A4249_RS08760at 1757.128 kb on - strand, within A4249_RS08760at 1757.234 kb on + strand, within A4249_RS08760at 1757.234 kb on + strand, within A4249_RS08760at 1757.234 kb on + strand, within A4249_RS08760at 1757.235 kb on - strand, within A4249_RS08760at 1757.606 kb on + strand, within A4249_RS08765at 1757.606 kb on + strand, within A4249_RS08765at 1757.607 kb on - strand, within A4249_RS08765at 1757.607 kb on - strand, within A4249_RS08765at 1757.642 kb on + strand, within A4249_RS08765at 1757.642 kb on + strand, within A4249_RS08765at 1757.643 kb on - strand, within A4249_RS08765at 1757.643 kb on - strand, within A4249_RS08765at 1757.643 kb on - strand, within A4249_RS08765at 1757.643 kb on - strand, within A4249_RS08765at 1757.666 kb on + strand, within A4249_RS08765at 1757.666 kb on + strand, within A4249_RS08765at 1757.667 kb on - strand, within A4249_RS08765at 1757.667 kb on - strand, within A4249_RS08765at 1757.756 kb on + strand, within A4249_RS08765at 1757.756 kb on + strand, within A4249_RS08765at 1757.756 kb on + strand, within A4249_RS08765at 1757.756 kb on + strand, within A4249_RS08765at 1757.756 kb on + strand, within A4249_RS08765at 1757.757 kb on - strand, within A4249_RS08765at 1757.757 kb on - strand, within A4249_RS08765at 1757.757 kb on - strand, within A4249_RS08765at 1757.801 kb on + strand, within A4249_RS08765at 1757.802 kb on - strand, within A4249_RS08765at 1757.802 kb on - strand, within A4249_RS08765at 1757.984 kb on + strandat 1757.984 kb on + strandat 1758.000 kb on + strandat 1758.001 kb on - strandat 1758.001 kb on - strandat 1758.053 kb on + strandat 1758.054 kb on - strandat 1758.068 kb on - strandat 1758.145 kb on + strandat 1758.145 kb on + strandat 1758.146 kb on - strandat 1758.146 kb on - strandat 1758.146 kb on - strandat 1758.345 kb on + strand, within A4249_RS08770at 1758.345 kb on + strand, within A4249_RS08770at 1758.345 kb on + strand, within A4249_RS08770at 1758.345 kb on + strand, within A4249_RS08770at 1758.345 kb on + strand, within A4249_RS08770at 1758.345 kb on + strand, within A4249_RS08770at 1758.346 kb on - strand, within A4249_RS08770at 1758.346 kb on - strand, within A4249_RS08770at 1758.346 kb on - strand, within A4249_RS08770at 1758.394 kb on + strand, within A4249_RS08770at 1758.433 kb on + strand, within A4249_RS08770at 1758.433 kb on + strand, within A4249_RS08770at 1758.433 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.481 kb on + strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.482 kb on - strand, within A4249_RS08770at 1758.609 kb on + strand, within A4249_RS08770at 1758.610 kb on - strand, within A4249_RS08770at 1758.859 kb on + strand, within A4249_RS08770at 1758.859 kb on + strand, within A4249_RS08770at 1758.860 kb on - strand, within A4249_RS08770at 1758.905 kb on - strand, within A4249_RS08770at 1758.919 kb on + strand, within A4249_RS08770

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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1,756,603 + +0.3
1,756,603 + +0.9
1,756,603 + -0.2
1,756,603 + -0.1
1,756,603 + -0.1
1,756,603 + -0.1
1,756,604 - -0.3
1,756,604 - +0.5
1,756,622 + A4249_RS08755 0.11 -0.2
1,756,622 + A4249_RS08755 0.11 -0.9
1,756,622 + A4249_RS08755 0.11 -0.7
1,756,622 + A4249_RS08755 0.11 -0.5
1,756,623 - A4249_RS08755 0.11 -0.3
1,756,623 - A4249_RS08755 0.11 -0.1
1,756,623 - A4249_RS08755 0.11 -0.1
1,756,623 - A4249_RS08755 0.11 +0.8
1,756,623 - A4249_RS08755 0.11 -0.2
1,756,623 - A4249_RS08755 0.11 -0.5
1,756,623 - A4249_RS08755 0.11 -1.0
1,756,623 - A4249_RS08755 0.11 +0.5
1,756,738 + A4249_RS08755 0.44 -0.1
1,756,738 + A4249_RS08755 0.44 -0.3
1,756,738 + A4249_RS08755 0.44 -0.7
1,756,738 + A4249_RS08755 0.44 -0.6
1,756,739 - A4249_RS08755 0.45 -0.4
1,756,739 - A4249_RS08755 0.45 -0.0
1,756,739 - A4249_RS08755 0.45 +0.2
1,756,865 + A4249_RS08755 0.81 +0.7
1,756,865 + A4249_RS08755 0.81 -0.3
1,756,865 + A4249_RS08755 0.81 -0.1
1,756,865 + A4249_RS08755 0.81 +0.2
1,756,865 + A4249_RS08755 0.81 +0.3
1,756,865 + A4249_RS08755 0.81 -0.5
1,756,865 + A4249_RS08755 0.81 +0.3
1,756,866 - A4249_RS08755 0.81 -0.8
1,756,866 - A4249_RS08755 0.81 -0.1
1,756,866 - A4249_RS08755 0.81 +0.3
1,756,866 - A4249_RS08755 0.81 +1.8
1,756,866 - A4249_RS08755 0.81 +0.5
1,756,866 - A4249_RS08755 0.81 -0.2
1,756,866 - A4249_RS08755 0.81 -0.6
1,756,934 + +0.0
1,756,961 + +0.1
1,756,961 + +0.5
1,756,961 + -0.3
1,756,962 - -1.2
1,756,962 - +0.7
1,756,962 - -0.0
1,757,127 + A4249_RS08760 0.29 -0.2
1,757,127 + A4249_RS08760 0.29 -0.1
1,757,127 + A4249_RS08760 0.29 +0.3
1,757,127 + A4249_RS08760 0.29 -0.5
1,757,128 - A4249_RS08760 0.29 -0.1
1,757,128 - A4249_RS08760 0.29 +0.0
1,757,234 + A4249_RS08760 0.51 -0.2
1,757,234 + A4249_RS08760 0.51 +0.2
1,757,234 + A4249_RS08760 0.51 -0.1
1,757,235 - A4249_RS08760 0.51 -0.3
1,757,606 + A4249_RS08765 0.22 +0.2
1,757,606 + A4249_RS08765 0.22 -0.1
1,757,607 - A4249_RS08765 0.22 -1.5
1,757,607 - A4249_RS08765 0.22 -0.1
1,757,642 + A4249_RS08765 0.30 -0.7
1,757,642 + A4249_RS08765 0.30 -0.0
1,757,643 - A4249_RS08765 0.30 -0.3
1,757,643 - A4249_RS08765 0.30 -0.2
1,757,643 - A4249_RS08765 0.30 +0.1
1,757,643 - A4249_RS08765 0.30 +0.5
1,757,666 + A4249_RS08765 0.35 -0.1
1,757,666 + A4249_RS08765 0.35 +0.6
1,757,667 - A4249_RS08765 0.35 +0.3
1,757,667 - A4249_RS08765 0.35 -0.5
1,757,756 + A4249_RS08765 0.55 -0.4
1,757,756 + A4249_RS08765 0.55 +0.2
1,757,756 + A4249_RS08765 0.55 -0.1
1,757,756 + A4249_RS08765 0.55 +0.4
1,757,756 + A4249_RS08765 0.55 -0.0
1,757,757 - A4249_RS08765 0.55 +0.1
1,757,757 - A4249_RS08765 0.55 +0.7
1,757,757 - A4249_RS08765 0.55 -0.4
1,757,801 + A4249_RS08765 0.65 +0.2
1,757,802 - A4249_RS08765 0.65 -0.0
1,757,802 - A4249_RS08765 0.65 +0.3
1,757,984 + +0.5
1,757,984 + -1.5
1,758,000 + -0.2
1,758,001 - +0.1
1,758,001 - +0.1
1,758,053 + +0.4
1,758,054 - +1.1
1,758,068 - +0.1
1,758,145 + +0.8
1,758,145 + +1.4
1,758,146 - +0.2
1,758,146 - +0.5
1,758,146 - -0.1
1,758,345 + A4249_RS08770 0.20 -0.0
1,758,345 + A4249_RS08770 0.20 +0.3
1,758,345 + A4249_RS08770 0.20 -0.4
1,758,345 + A4249_RS08770 0.20 +0.2
1,758,345 + A4249_RS08770 0.20 -0.1
1,758,345 + A4249_RS08770 0.20 +0.2
1,758,346 - A4249_RS08770 0.20 +0.9
1,758,346 - A4249_RS08770 0.20 +0.6
1,758,346 - A4249_RS08770 0.20 -1.4
1,758,394 + A4249_RS08770 0.23 -1.3
1,758,433 + A4249_RS08770 0.26 -1.1
1,758,433 + A4249_RS08770 0.26 +0.7
1,758,433 + A4249_RS08770 0.26 -0.3
1,758,481 + A4249_RS08770 0.30 +0.1
1,758,481 + A4249_RS08770 0.30 -0.0
1,758,481 + A4249_RS08770 0.30 +0.7
1,758,481 + A4249_RS08770 0.30 +0.4
1,758,481 + A4249_RS08770 0.30 -0.2
1,758,481 + A4249_RS08770 0.30 -0.3
1,758,481 + A4249_RS08770 0.30 -0.3
1,758,481 + A4249_RS08770 0.30 +0.1
1,758,481 + A4249_RS08770 0.30 +0.1
1,758,481 + A4249_RS08770 0.30 +0.0
1,758,481 + A4249_RS08770 0.30 +0.4
1,758,481 + A4249_RS08770 0.30 -2.0
1,758,481 + A4249_RS08770 0.30 +0.1
1,758,481 + A4249_RS08770 0.30 -0.1
1,758,481 + A4249_RS08770 0.30 -0.5
1,758,481 + A4249_RS08770 0.30 +0.2
1,758,481 + A4249_RS08770 0.30 -0.3
1,758,481 + A4249_RS08770 0.30 +0.5
1,758,481 + A4249_RS08770 0.30 +0.7
1,758,481 + A4249_RS08770 0.30 +0.8
1,758,481 + A4249_RS08770 0.30 -0.1
1,758,481 + A4249_RS08770 0.30 -0.5
1,758,481 + A4249_RS08770 0.30 -0.2
1,758,482 - A4249_RS08770 0.30 -0.4
1,758,482 - A4249_RS08770 0.30 -0.5
1,758,482 - A4249_RS08770 0.30 +0.8
1,758,482 - A4249_RS08770 0.30 +0.9
1,758,482 - A4249_RS08770 0.30 -0.1
1,758,482 - A4249_RS08770 0.30 +0.2
1,758,482 - A4249_RS08770 0.30 -0.3
1,758,482 - A4249_RS08770 0.30 -0.7
1,758,482 - A4249_RS08770 0.30 +0.5
1,758,482 - A4249_RS08770 0.30 +1.1
1,758,482 - A4249_RS08770 0.30 +0.1
1,758,482 - A4249_RS08770 0.30 -0.0
1,758,482 - A4249_RS08770 0.30 -1.4
1,758,482 - A4249_RS08770 0.30 -0.2
1,758,482 - A4249_RS08770 0.30 -1.3
1,758,482 - A4249_RS08770 0.30 -0.4
1,758,482 - A4249_RS08770 0.30 +0.4
1,758,482 - A4249_RS08770 0.30 -0.2
1,758,482 - A4249_RS08770 0.30 +0.3
1,758,482 - A4249_RS08770 0.30 +0.8
1,758,482 - A4249_RS08770 0.30 -0.2
1,758,482 - A4249_RS08770 0.30 +0.3
1,758,482 - A4249_RS08770 0.30 +0.0
1,758,609 + A4249_RS08770 0.40 -3.1
1,758,610 - A4249_RS08770 0.40 -0.2
1,758,859 + A4249_RS08770 0.59 +1.1
1,758,859 + A4249_RS08770 0.59 -0.6
1,758,860 - A4249_RS08770 0.60 -1.0
1,758,905 - A4249_RS08770 0.63 -0.3
1,758,919 + A4249_RS08770 0.64 -2.0

Or see this region's nucleotide sequence