Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08340

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08330 and A4249_RS08335 are separated by 1 nucleotidesA4249_RS08335 and A4249_RS08340 are separated by 2 nucleotidesA4249_RS08340 and A4249_RS08345 are separated by 126 nucleotidesA4249_RS08345 and A4249_RS08350 are separated by 75 nucleotides A4249_RS08330: A4249_RS08330 - NUDIX domain-containing protein, at 1,673,460 to 1,674,161 _RS08330 A4249_RS08335: A4249_RS08335 - DUF5990 family protein, at 1,674,163 to 1,674,576 _RS08335 A4249_RS08340: A4249_RS08340 - hypothetical protein, at 1,674,579 to 1,675,145 _RS08340 A4249_RS08345: A4249_RS08345 - 50S ribosomal protein L33, at 1,675,272 to 1,675,439 _RS08345 A4249_RS08350: A4249_RS08350 - PleD family two-component system response regulator, at 1,675,515 to 1,676,876 _RS08350 Position (kb) 1674 1675 1676Strain fitness (log2 ratio) -2 -1 0 1at 1673.839 kb on - strand, within A4249_RS08330at 1673.880 kb on + strand, within A4249_RS08330at 1673.880 kb on + strand, within A4249_RS08330at 1673.880 kb on + strand, within A4249_RS08330at 1673.880 kb on + strand, within A4249_RS08330at 1673.880 kb on + strand, within A4249_RS08330at 1673.881 kb on - strand, within A4249_RS08330at 1673.881 kb on - strand, within A4249_RS08330at 1673.881 kb on - strand, within A4249_RS08330at 1673.881 kb on - strand, within A4249_RS08330at 1673.897 kb on + strand, within A4249_RS08330at 1673.898 kb on - strand, within A4249_RS08330at 1673.898 kb on - strand, within A4249_RS08330at 1674.223 kb on + strand, within A4249_RS08335at 1674.223 kb on + strand, within A4249_RS08335at 1674.224 kb on - strand, within A4249_RS08335at 1674.224 kb on - strand, within A4249_RS08335at 1674.224 kb on - strand, within A4249_RS08335at 1674.224 kb on - strand, within A4249_RS08335at 1674.224 kb on - strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.373 kb on + strand, within A4249_RS08335at 1674.374 kb on - strand, within A4249_RS08335at 1674.374 kb on - strand, within A4249_RS08335at 1674.374 kb on - strand, within A4249_RS08335at 1674.447 kb on + strand, within A4249_RS08335at 1674.447 kb on + strand, within A4249_RS08335at 1674.447 kb on + strand, within A4249_RS08335at 1674.448 kb on - strand, within A4249_RS08335at 1674.448 kb on - strand, within A4249_RS08335at 1674.448 kb on - strand, within A4249_RS08335at 1674.448 kb on - strand, within A4249_RS08335at 1674.545 kb on + strandat 1674.546 kb on - strandat 1674.546 kb on - strandat 1674.647 kb on - strand, within A4249_RS08340at 1674.723 kb on + strand, within A4249_RS08340at 1674.723 kb on + strand, within A4249_RS08340at 1674.724 kb on - strand, within A4249_RS08340at 1674.796 kb on + strand, within A4249_RS08340at 1674.797 kb on - strand, within A4249_RS08340at 1674.797 kb on - strand, within A4249_RS08340at 1674.917 kb on + strand, within A4249_RS08340at 1674.917 kb on + strand, within A4249_RS08340at 1674.917 kb on + strand, within A4249_RS08340at 1674.917 kb on + strand, within A4249_RS08340at 1674.917 kb on + strand, within A4249_RS08340at 1674.917 kb on + strand, within A4249_RS08340at 1674.917 kb on + strand, within A4249_RS08340at 1674.918 kb on - strand, within A4249_RS08340at 1674.918 kb on - strand, within A4249_RS08340at 1674.918 kb on - strand, within A4249_RS08340at 1674.918 kb on - strand, within A4249_RS08340at 1675.156 kb on + strandat 1675.156 kb on + strandat 1675.156 kb on + strandat 1675.156 kb on + strandat 1675.156 kb on + strandat 1675.156 kb on + strandat 1675.157 kb on - strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.158 kb on + strandat 1675.159 kb on - strandat 1675.159 kb on - strandat 1675.159 kb on - strandat 1675.159 kb on - strandat 1675.159 kb on - strandat 1675.159 kb on - strandat 1675.159 kb on - strandat 1675.159 kb on - strandat 1675.437 kb on + strandat 1675.437 kb on + strandat 1675.438 kb on - strandat 1675.438 kb on - strandat 1675.438 kb on - strandat 1675.564 kb on + strandat 1675.564 kb on + strandat 1675.564 kb on + strandat 1675.564 kb on + strandat 1675.565 kb on - strandat 1675.565 kb on - strandat 1675.565 kb on - strandat 1675.605 kb on - strandat 1675.605 kb on - strandat 1675.975 kb on + strand, within A4249_RS08350at 1675.975 kb on + strand, within A4249_RS08350at 1675.975 kb on + strand, within A4249_RS08350at 1675.975 kb on + strand, within A4249_RS08350at 1675.975 kb on + strand, within A4249_RS08350at 1675.975 kb on + strand, within A4249_RS08350at 1675.976 kb on - strand, within A4249_RS08350at 1675.976 kb on - strand, within A4249_RS08350at 1675.976 kb on - strand, within A4249_RS08350at 1676.059 kb on + strand, within A4249_RS08350at 1676.060 kb on - strand, within A4249_RS08350at 1676.060 kb on - strand, within A4249_RS08350

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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1,673,839 - A4249_RS08330 0.54 -0.2
1,673,880 + A4249_RS08330 0.60 +0.0
1,673,880 + A4249_RS08330 0.60 -0.0
1,673,880 + A4249_RS08330 0.60 -0.4
1,673,880 + A4249_RS08330 0.60 +0.6
1,673,880 + A4249_RS08330 0.60 -0.3
1,673,881 - A4249_RS08330 0.60 +0.2
1,673,881 - A4249_RS08330 0.60 +1.2
1,673,881 - A4249_RS08330 0.60 -1.5
1,673,881 - A4249_RS08330 0.60 -0.2
1,673,897 + A4249_RS08330 0.62 -0.2
1,673,898 - A4249_RS08330 0.62 -0.8
1,673,898 - A4249_RS08330 0.62 -0.1
1,674,223 + A4249_RS08335 0.14 +0.1
1,674,223 + A4249_RS08335 0.14 +0.5
1,674,224 - A4249_RS08335 0.15 -0.7
1,674,224 - A4249_RS08335 0.15 +0.5
1,674,224 - A4249_RS08335 0.15 -2.2
1,674,224 - A4249_RS08335 0.15 -0.4
1,674,224 - A4249_RS08335 0.15 +0.1
1,674,373 + A4249_RS08335 0.51 -0.5
1,674,373 + A4249_RS08335 0.51 -0.4
1,674,373 + A4249_RS08335 0.51 +0.3
1,674,373 + A4249_RS08335 0.51 -0.5
1,674,373 + A4249_RS08335 0.51 -0.5
1,674,373 + A4249_RS08335 0.51 -0.9
1,674,373 + A4249_RS08335 0.51 +0.1
1,674,373 + A4249_RS08335 0.51 +0.8
1,674,373 + A4249_RS08335 0.51 +0.2
1,674,373 + A4249_RS08335 0.51 -0.3
1,674,373 + A4249_RS08335 0.51 -0.4
1,674,373 + A4249_RS08335 0.51 +0.3
1,674,373 + A4249_RS08335 0.51 -0.6
1,674,374 - A4249_RS08335 0.51 -0.2
1,674,374 - A4249_RS08335 0.51 -0.3
1,674,374 - A4249_RS08335 0.51 -0.2
1,674,447 + A4249_RS08335 0.69 +0.1
1,674,447 + A4249_RS08335 0.69 -0.7
1,674,447 + A4249_RS08335 0.69 +0.7
1,674,448 - A4249_RS08335 0.69 +0.3
1,674,448 - A4249_RS08335 0.69 -0.0
1,674,448 - A4249_RS08335 0.69 +1.6
1,674,448 - A4249_RS08335 0.69 +0.6
1,674,545 + -0.4
1,674,546 - +0.2
1,674,546 - -0.0
1,674,647 - A4249_RS08340 0.12 +0.5
1,674,723 + A4249_RS08340 0.25 +0.3
1,674,723 + A4249_RS08340 0.25 -1.9
1,674,724 - A4249_RS08340 0.26 +0.8
1,674,796 + A4249_RS08340 0.38 +0.2
1,674,797 - A4249_RS08340 0.38 +0.0
1,674,797 - A4249_RS08340 0.38 +1.3
1,674,917 + A4249_RS08340 0.60 -0.6
1,674,917 + A4249_RS08340 0.60 -0.2
1,674,917 + A4249_RS08340 0.60 -0.3
1,674,917 + A4249_RS08340 0.60 -0.8
1,674,917 + A4249_RS08340 0.60 +0.4
1,674,917 + A4249_RS08340 0.60 +0.2
1,674,917 + A4249_RS08340 0.60 +0.4
1,674,918 - A4249_RS08340 0.60 -1.2
1,674,918 - A4249_RS08340 0.60 +0.2
1,674,918 - A4249_RS08340 0.60 +0.3
1,674,918 - A4249_RS08340 0.60 -0.1
1,675,156 + +0.1
1,675,156 + -0.2
1,675,156 + -1.0
1,675,156 + -0.4
1,675,156 + +0.0
1,675,156 + -0.1
1,675,157 - +0.0
1,675,158 + -0.1
1,675,158 + -0.2
1,675,158 + +0.3
1,675,158 + +0.6
1,675,158 + +0.9
1,675,158 + +0.8
1,675,158 + -0.3
1,675,158 + +0.9
1,675,158 + -0.2
1,675,158 + -0.0
1,675,158 + +0.0
1,675,158 + +0.3
1,675,158 + +0.8
1,675,159 - +1.6
1,675,159 - +0.6
1,675,159 - +0.3
1,675,159 - +1.3
1,675,159 - +1.3
1,675,159 - +0.3
1,675,159 - -0.4
1,675,159 - -0.7
1,675,437 + +1.0
1,675,437 + +0.0
1,675,438 - +0.0
1,675,438 - -0.2
1,675,438 - +1.3
1,675,564 + -0.7
1,675,564 + +0.7
1,675,564 + -0.2
1,675,564 + +0.2
1,675,565 - -0.3
1,675,565 - -0.1
1,675,565 - +0.4
1,675,605 - -0.3
1,675,605 - -0.1
1,675,975 + A4249_RS08350 0.34 -1.1
1,675,975 + A4249_RS08350 0.34 +0.2
1,675,975 + A4249_RS08350 0.34 +0.3
1,675,975 + A4249_RS08350 0.34 -0.5
1,675,975 + A4249_RS08350 0.34 +0.0
1,675,975 + A4249_RS08350 0.34 +0.1
1,675,976 - A4249_RS08350 0.34 +0.7
1,675,976 - A4249_RS08350 0.34 +0.2
1,675,976 - A4249_RS08350 0.34 -0.7
1,676,059 + A4249_RS08350 0.40 +0.4
1,676,060 - A4249_RS08350 0.40 -0.1
1,676,060 - A4249_RS08350 0.40 +0.7

Or see this region's nucleotide sequence