Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06675

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06670 and A4249_RS06675 are separated by 157 nucleotidesA4249_RS06675 and A4249_RS06680 are separated by 139 nucleotides A4249_RS06670: A4249_RS06670 - phospholipase D-like domain-containing protein, at 1,358,280 to 1,359,758 _RS06670 A4249_RS06675: A4249_RS06675 - hypothetical protein, at 1,359,916 to 1,360,098 _RS06675 A4249_RS06680: A4249_RS06680 - tipN, at 1,360,238 to 1,362,820 _RS06680 Position (kb) 1359 1360 1361Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1358.923 kb on + strand, within A4249_RS06670at 1358.938 kb on + strand, within A4249_RS06670at 1358.939 kb on - strand, within A4249_RS06670at 1358.939 kb on - strand, within A4249_RS06670at 1358.976 kb on + strand, within A4249_RS06670at 1358.977 kb on - strand, within A4249_RS06670at 1359.424 kb on + strand, within A4249_RS06670at 1359.424 kb on + strand, within A4249_RS06670at 1359.424 kb on + strand, within A4249_RS06670at 1359.425 kb on - strand, within A4249_RS06670at 1359.425 kb on - strand, within A4249_RS06670at 1359.425 kb on - strand, within A4249_RS06670at 1359.425 kb on - strand, within A4249_RS06670at 1359.425 kb on - strand, within A4249_RS06670at 1359.425 kb on - strand, within A4249_RS06670at 1359.649 kb on + strandat 1359.649 kb on + strandat 1359.650 kb on - strandat 1359.650 kb on - strandat 1359.650 kb on - strandat 1359.650 kb on - strandat 1359.650 kb on - strandat 1359.735 kb on - strandat 1359.736 kb on + strandat 1359.736 kb on + strandat 1359.736 kb on + strandat 1359.736 kb on + strandat 1359.736 kb on + strandat 1359.736 kb on + strandat 1359.736 kb on + strandat 1359.736 kb on + strandat 1359.737 kb on - strandat 1359.737 kb on - strandat 1359.737 kb on - strandat 1359.737 kb on - strandat 1359.737 kb on - strandat 1359.737 kb on - strandat 1359.737 kb on - strandat 1359.737 kb on - strandat 1359.737 kb on - strandat 1359.737 kb on - strandat 1359.765 kb on + strandat 1359.765 kb on + strandat 1359.765 kb on + strandat 1359.765 kb on + strandat 1359.765 kb on + strandat 1359.765 kb on + strandat 1359.765 kb on + strandat 1359.765 kb on + strandat 1359.765 kb on + strandat 1359.766 kb on - strandat 1359.766 kb on - strandat 1359.766 kb on - strandat 1359.766 kb on - strandat 1359.766 kb on - strandat 1359.766 kb on - strandat 1359.878 kb on + strandat 1359.879 kb on - strandat 1359.887 kb on + strandat 1359.893 kb on + strandat 1359.893 kb on + strandat 1359.893 kb on + strandat 1359.894 kb on - strandat 1359.894 kb on - strandat 1359.894 kb on - strandat 1359.894 kb on - strandat 1359.894 kb on - strandat 1359.894 kb on - strandat 1359.894 kb on - strandat 1359.894 kb on - strandat 1359.912 kb on + strandat 1359.912 kb on + strandat 1359.912 kb on + strandat 1359.913 kb on - strandat 1360.184 kb on + strandat 1360.184 kb on + strandat 1360.184 kb on + strandat 1360.185 kb on - strandat 1360.185 kb on - strandat 1360.185 kb on - strandat 1360.217 kb on - strandat 1360.237 kb on + strandat 1360.237 kb on + strandat 1360.237 kb on + strandat 1360.237 kb on + strandat 1360.237 kb on + strandat 1360.237 kb on + strandat 1360.237 kb on + strandat 1360.238 kb on - strandat 1360.634 kb on + strand, within A4249_RS06680at 1360.634 kb on + strand, within A4249_RS06680at 1360.694 kb on + strand, within A4249_RS06680at 1360.695 kb on - strand, within A4249_RS06680at 1360.745 kb on + strand, within A4249_RS06680

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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1,358,923 + A4249_RS06670 0.43 -0.5
1,358,938 + A4249_RS06670 0.44 +0.7
1,358,939 - A4249_RS06670 0.45 +2.9
1,358,939 - A4249_RS06670 0.45 +1.4
1,358,976 + A4249_RS06670 0.47 +0.9
1,358,977 - A4249_RS06670 0.47 -1.6
1,359,424 + A4249_RS06670 0.77 -0.7
1,359,424 + A4249_RS06670 0.77 +0.4
1,359,424 + A4249_RS06670 0.77 +0.8
1,359,425 - A4249_RS06670 0.77 +0.9
1,359,425 - A4249_RS06670 0.77 -0.1
1,359,425 - A4249_RS06670 0.77 +0.9
1,359,425 - A4249_RS06670 0.77 -1.0
1,359,425 - A4249_RS06670 0.77 +2.0
1,359,425 - A4249_RS06670 0.77 +0.7
1,359,649 + +1.1
1,359,649 + -0.0
1,359,650 - +1.7
1,359,650 - +0.3
1,359,650 - +0.7
1,359,650 - -0.2
1,359,650 - -0.1
1,359,735 - +0.1
1,359,736 + +0.6
1,359,736 + -0.8
1,359,736 + -0.6
1,359,736 + -0.0
1,359,736 + +0.3
1,359,736 + +1.4
1,359,736 + +0.6
1,359,736 + -0.8
1,359,737 - +0.5
1,359,737 - +0.3
1,359,737 - +0.3
1,359,737 - -0.0
1,359,737 - +1.7
1,359,737 - -0.9
1,359,737 - +0.5
1,359,737 - -0.6
1,359,737 - +0.2
1,359,737 - -0.8
1,359,765 + +0.1
1,359,765 + -0.7
1,359,765 + +0.7
1,359,765 + -0.2
1,359,765 + -1.0
1,359,765 + +0.2
1,359,765 + -0.1
1,359,765 + -0.7
1,359,765 + +1.7
1,359,766 - +0.0
1,359,766 - +0.4
1,359,766 - -1.9
1,359,766 - -0.2
1,359,766 - -0.1
1,359,766 - -0.6
1,359,878 + +1.2
1,359,879 - +0.1
1,359,887 + -0.4
1,359,893 + -0.6
1,359,893 + -0.1
1,359,893 + +0.2
1,359,894 - -0.9
1,359,894 - +0.2
1,359,894 - +0.4
1,359,894 - -0.6
1,359,894 - +0.9
1,359,894 - -0.1
1,359,894 - +0.2
1,359,894 - -0.5
1,359,912 + -0.4
1,359,912 + +0.6
1,359,912 + -0.3
1,359,913 - +0.1
1,360,184 + -0.8
1,360,184 + -0.2
1,360,184 + -0.2
1,360,185 - -0.4
1,360,185 - -0.2
1,360,185 - -0.2
1,360,217 - -0.4
1,360,237 + +0.1
1,360,237 + -2.0
1,360,237 + -2.6
1,360,237 + +0.9
1,360,237 + +0.1
1,360,237 + +0.8
1,360,237 + +0.5
1,360,238 - -0.8
1,360,634 + A4249_RS06680 0.15 +1.4
1,360,634 + A4249_RS06680 0.15 +0.1
1,360,694 + A4249_RS06680 0.18 +0.6
1,360,695 - A4249_RS06680 0.18 -0.4
1,360,745 + A4249_RS06680 0.20 +0.8

Or see this region's nucleotide sequence