Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06455

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06445 and A4249_RS06450 are separated by 58 nucleotidesA4249_RS06450 and A4249_RS06455 are separated by 33 nucleotidesA4249_RS06455 and A4249_RS06460 are separated by 105 nucleotides A4249_RS06445: A4249_RS06445 - autotransporter outer membrane beta-barrel domain-containing protein, at 1,311,589 to 1,314,882 _RS06445 A4249_RS06450: A4249_RS06450 - tRNA-Val, at 1,314,941 to 1,315,017 _RS06450 A4249_RS06455: A4249_RS06455 - HU family DNA-binding protein, at 1,315,051 to 1,315,326 _RS06455 A4249_RS06460: A4249_RS06460 - endopeptidase La, at 1,315,432 to 1,317,828 _RS06460 Position (kb) 1315 1316Strain fitness (log2 ratio) -2 -1 0 1 2at 1314.092 kb on - strand, within A4249_RS06445at 1314.118 kb on + strand, within A4249_RS06445at 1314.118 kb on + strand, within A4249_RS06445at 1314.119 kb on - strand, within A4249_RS06445at 1314.119 kb on - strand, within A4249_RS06445at 1314.119 kb on - strand, within A4249_RS06445at 1314.280 kb on + strand, within A4249_RS06445at 1314.280 kb on + strand, within A4249_RS06445at 1314.280 kb on + strand, within A4249_RS06445at 1314.281 kb on - strand, within A4249_RS06445at 1314.281 kb on - strand, within A4249_RS06445at 1314.281 kb on - strand, within A4249_RS06445at 1314.302 kb on - strand, within A4249_RS06445at 1314.379 kb on + strand, within A4249_RS06445at 1314.379 kb on + strand, within A4249_RS06445at 1314.380 kb on - strand, within A4249_RS06445at 1314.380 kb on - strand, within A4249_RS06445at 1314.439 kb on + strand, within A4249_RS06445at 1314.439 kb on + strand, within A4249_RS06445at 1314.439 kb on + strand, within A4249_RS06445at 1314.439 kb on + strand, within A4249_RS06445at 1314.439 kb on + strand, within A4249_RS06445at 1314.439 kb on + strand, within A4249_RS06445at 1314.439 kb on + strand, within A4249_RS06445at 1314.439 kb on + strand, within A4249_RS06445at 1314.440 kb on - strand, within A4249_RS06445at 1314.440 kb on - strand, within A4249_RS06445at 1314.440 kb on - strand, within A4249_RS06445at 1314.490 kb on + strand, within A4249_RS06445at 1314.490 kb on + strand, within A4249_RS06445at 1314.491 kb on - strand, within A4249_RS06445at 1314.656 kb on - strandat 1314.656 kb on - strandat 1314.838 kb on + strandat 1314.838 kb on + strandat 1314.838 kb on + strandat 1314.838 kb on + strandat 1314.838 kb on + strandat 1314.838 kb on + strandat 1314.838 kb on + strandat 1314.838 kb on + strandat 1314.838 kb on + strandat 1314.839 kb on - strandat 1314.848 kb on - strandat 1314.982 kb on + strand, within A4249_RS06450at 1314.982 kb on + strand, within A4249_RS06450at 1314.983 kb on - strand, within A4249_RS06450at 1315.036 kb on + strandat 1315.037 kb on - strandat 1315.293 kb on + strand, within A4249_RS06455at 1315.352 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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1,314,092 - A4249_RS06445 0.76 -0.4
1,314,118 + A4249_RS06445 0.77 -0.0
1,314,118 + A4249_RS06445 0.77 -0.6
1,314,119 - A4249_RS06445 0.77 -0.6
1,314,119 - A4249_RS06445 0.77 -0.6
1,314,119 - A4249_RS06445 0.77 -1.2
1,314,280 + A4249_RS06445 0.82 +0.3
1,314,280 + A4249_RS06445 0.82 +0.2
1,314,280 + A4249_RS06445 0.82 -0.9
1,314,281 - A4249_RS06445 0.82 +0.5
1,314,281 - A4249_RS06445 0.82 -0.6
1,314,281 - A4249_RS06445 0.82 -0.6
1,314,302 - A4249_RS06445 0.82 +0.0
1,314,379 + A4249_RS06445 0.85 +1.9
1,314,379 + A4249_RS06445 0.85 -0.6
1,314,380 - A4249_RS06445 0.85 +0.6
1,314,380 - A4249_RS06445 0.85 -0.2
1,314,439 + A4249_RS06445 0.87 -0.4
1,314,439 + A4249_RS06445 0.87 -0.7
1,314,439 + A4249_RS06445 0.87 +0.8
1,314,439 + A4249_RS06445 0.87 -0.2
1,314,439 + A4249_RS06445 0.87 +0.7
1,314,439 + A4249_RS06445 0.87 +0.9
1,314,439 + A4249_RS06445 0.87 -2.2
1,314,439 + A4249_RS06445 0.87 -0.1
1,314,440 - A4249_RS06445 0.87 -0.0
1,314,440 - A4249_RS06445 0.87 -0.4
1,314,440 - A4249_RS06445 0.87 +1.0
1,314,490 + A4249_RS06445 0.88 -0.0
1,314,490 + A4249_RS06445 0.88 -0.1
1,314,491 - A4249_RS06445 0.88 -2.3
1,314,656 - -1.2
1,314,656 - +0.8
1,314,838 + +0.9
1,314,838 + -0.4
1,314,838 + -0.0
1,314,838 + +0.2
1,314,838 + -0.0
1,314,838 + -0.5
1,314,838 + -0.6
1,314,838 + -1.0
1,314,838 + +0.8
1,314,839 - -0.7
1,314,848 - +0.2
1,314,982 + A4249_RS06450 0.53 -0.0
1,314,982 + A4249_RS06450 0.53 -1.5
1,314,983 - A4249_RS06450 0.55 -1.5
1,315,036 + +0.5
1,315,037 - -0.6
1,315,293 + A4249_RS06455 0.88 -0.5
1,315,352 - +1.0

Or see this region's nucleotide sequence