Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05870

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05860 and A4249_RS05865 are separated by 27 nucleotidesA4249_RS05865 and A4249_RS05870 are separated by 19 nucleotidesA4249_RS05870 and A4249_RS05875 are separated by 77 nucleotidesA4249_RS05875 and A4249_RS05880 are separated by 45 nucleotidesA4249_RS05880 and A4249_RS05885 are separated by 21 nucleotides A4249_RS05860: A4249_RS05860 - rhodanese-related sulfurtransferase, at 1,202,611 to 1,203,567 _RS05860 A4249_RS05865: A4249_RS05865 - tRNA-Arg, at 1,203,595 to 1,203,671 _RS05865 A4249_RS05870: A4249_RS05870 - ETC complex I subunit, at 1,203,691 to 1,203,996 _RS05870 A4249_RS05875: A4249_RS05875 - tRNA-Pro, at 1,204,074 to 1,204,150 _RS05875 A4249_RS05880: A4249_RS05880 - DUF192 domain-containing protein, at 1,204,196 to 1,204,675 _RS05880 A4249_RS05885: A4249_RS05885 - cold-shock protein, at 1,204,697 to 1,205,236 _RS05885 Position (kb) 1203 1204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1202.737 kb on + strand, within A4249_RS05860at 1202.737 kb on + strand, within A4249_RS05860at 1202.737 kb on + strand, within A4249_RS05860at 1202.738 kb on - strand, within A4249_RS05860at 1202.738 kb on - strand, within A4249_RS05860at 1202.751 kb on - strand, within A4249_RS05860at 1202.751 kb on - strand, within A4249_RS05860at 1202.751 kb on - strand, within A4249_RS05860at 1202.751 kb on - strand, within A4249_RS05860at 1202.808 kb on + strand, within A4249_RS05860at 1202.808 kb on + strand, within A4249_RS05860at 1202.808 kb on + strand, within A4249_RS05860at 1202.809 kb on - strand, within A4249_RS05860at 1202.809 kb on - strand, within A4249_RS05860at 1202.809 kb on - strand, within A4249_RS05860at 1202.809 kb on - strand, within A4249_RS05860at 1202.809 kb on - strand, within A4249_RS05860at 1202.824 kb on + strand, within A4249_RS05860at 1202.825 kb on - strand, within A4249_RS05860at 1202.879 kb on - strand, within A4249_RS05860at 1202.909 kb on + strand, within A4249_RS05860at 1202.910 kb on - strand, within A4249_RS05860at 1203.005 kb on + strand, within A4249_RS05860at 1203.005 kb on + strand, within A4249_RS05860at 1203.005 kb on + strand, within A4249_RS05860at 1203.006 kb on - strand, within A4249_RS05860at 1203.006 kb on - strand, within A4249_RS05860at 1203.006 kb on - strand, within A4249_RS05860at 1203.087 kb on + strand, within A4249_RS05860at 1203.087 kb on + strand, within A4249_RS05860at 1203.087 kb on + strand, within A4249_RS05860at 1203.087 kb on + strand, within A4249_RS05860at 1203.094 kb on - strand, within A4249_RS05860at 1203.137 kb on + strand, within A4249_RS05860at 1203.137 kb on + strand, within A4249_RS05860at 1203.138 kb on - strand, within A4249_RS05860at 1203.138 kb on - strand, within A4249_RS05860at 1203.204 kb on + strand, within A4249_RS05860at 1203.205 kb on - strand, within A4249_RS05860at 1203.209 kb on + strand, within A4249_RS05860at 1203.209 kb on + strand, within A4249_RS05860at 1203.209 kb on + strand, within A4249_RS05860at 1203.210 kb on - strand, within A4249_RS05860at 1203.317 kb on + strand, within A4249_RS05860at 1203.317 kb on + strand, within A4249_RS05860at 1203.317 kb on + strand, within A4249_RS05860at 1203.317 kb on + strand, within A4249_RS05860at 1203.318 kb on - strand, within A4249_RS05860at 1203.318 kb on - strand, within A4249_RS05860at 1203.318 kb on - strand, within A4249_RS05860at 1203.318 kb on - strand, within A4249_RS05860at 1203.318 kb on - strand, within A4249_RS05860at 1203.318 kb on - strand, within A4249_RS05860at 1203.318 kb on - strand, within A4249_RS05860at 1203.318 kb on - strand, within A4249_RS05860at 1203.318 kb on - strand, within A4249_RS05860at 1203.516 kb on - strandat 1203.516 kb on - strandat 1203.737 kb on + strand, within A4249_RS05870at 1203.737 kb on + strand, within A4249_RS05870at 1203.738 kb on - strand, within A4249_RS05870at 1203.738 kb on - strand, within A4249_RS05870at 1203.738 kb on - strand, within A4249_RS05870at 1203.738 kb on - strand, within A4249_RS05870at 1203.738 kb on - strand, within A4249_RS05870at 1203.806 kb on + strand, within A4249_RS05870at 1203.807 kb on - strand, within A4249_RS05870at 1203.807 kb on - strand, within A4249_RS05870at 1203.807 kb on - strand, within A4249_RS05870at 1203.807 kb on - strand, within A4249_RS05870at 1203.981 kb on - strandat 1203.981 kb on - strandat 1203.981 kb on - strandat 1204.053 kb on + strandat 1204.053 kb on + strandat 1204.053 kb on + strandat 1204.053 kb on + strandat 1204.053 kb on + strandat 1204.054 kb on - strandat 1204.054 kb on - strandat 1204.054 kb on - strandat 1204.054 kb on - strandat 1204.054 kb on - strandat 1204.054 kb on - strandat 1204.054 kb on - strandat 1204.054 kb on - strandat 1204.054 kb on - strandat 1204.054 kb on - strandat 1204.169 kb on - strandat 1204.209 kb on + strandat 1204.209 kb on + strandat 1204.209 kb on + strandat 1204.210 kb on - strandat 1204.210 kb on - strandat 1204.210 kb on - strandat 1204.210 kb on - strandat 1204.210 kb on - strandat 1204.210 kb on - strandat 1204.210 kb on - strandat 1204.210 kb on - strandat 1204.217 kb on + strandat 1204.217 kb on + strandat 1204.217 kb on + strandat 1204.369 kb on + strand, within A4249_RS05880at 1204.369 kb on + strand, within A4249_RS05880at 1204.370 kb on - strand, within A4249_RS05880at 1204.371 kb on + strand, within A4249_RS05880at 1204.371 kb on + strand, within A4249_RS05880at 1204.371 kb on + strand, within A4249_RS05880at 1204.371 kb on + strand, within A4249_RS05880at 1204.371 kb on + strand, within A4249_RS05880at 1204.371 kb on + strand, within A4249_RS05880at 1204.371 kb on + strand, within A4249_RS05880at 1204.371 kb on + strand, within A4249_RS05880at 1204.371 kb on + strand, within A4249_RS05880at 1204.372 kb on - strand, within A4249_RS05880at 1204.372 kb on - strand, within A4249_RS05880at 1204.372 kb on - strand, within A4249_RS05880at 1204.372 kb on - strand, within A4249_RS05880at 1204.372 kb on - strand, within A4249_RS05880at 1204.372 kb on - strand, within A4249_RS05880at 1204.372 kb on - strand, within A4249_RS05880at 1204.675 kb on + strandat 1204.675 kb on + strandat 1204.675 kb on + strandat 1204.675 kb on + strandat 1204.675 kb on + strandat 1204.675 kb on + strandat 1204.675 kb on + strandat 1204.676 kb on - strandat 1204.676 kb on - strandat 1204.676 kb on - strandat 1204.676 kb on - strandat 1204.676 kb on - strandat 1204.676 kb on - strandat 1204.676 kb on - strandat 1204.676 kb on - strandat 1204.825 kb on + strand, within A4249_RS05885at 1204.825 kb on + strand, within A4249_RS05885at 1204.825 kb on + strand, within A4249_RS05885at 1204.826 kb on - strand, within A4249_RS05885

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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1,202,737 + A4249_RS05860 0.13 -0.4
1,202,737 + A4249_RS05860 0.13 -0.8
1,202,737 + A4249_RS05860 0.13 -0.5
1,202,738 - A4249_RS05860 0.13 +0.6
1,202,738 - A4249_RS05860 0.13 -0.3
1,202,751 - A4249_RS05860 0.15 -0.5
1,202,751 - A4249_RS05860 0.15 +0.3
1,202,751 - A4249_RS05860 0.15 +0.8
1,202,751 - A4249_RS05860 0.15 +0.1
1,202,808 + A4249_RS05860 0.21 -0.2
1,202,808 + A4249_RS05860 0.21 -0.4
1,202,808 + A4249_RS05860 0.21 +0.1
1,202,809 - A4249_RS05860 0.21 -0.8
1,202,809 - A4249_RS05860 0.21 -0.2
1,202,809 - A4249_RS05860 0.21 +0.2
1,202,809 - A4249_RS05860 0.21 -0.5
1,202,809 - A4249_RS05860 0.21 +0.0
1,202,824 + A4249_RS05860 0.22 +0.5
1,202,825 - A4249_RS05860 0.22 +0.3
1,202,879 - A4249_RS05860 0.28 +0.4
1,202,909 + A4249_RS05860 0.31 -0.1
1,202,910 - A4249_RS05860 0.31 +0.3
1,203,005 + A4249_RS05860 0.41 +0.1
1,203,005 + A4249_RS05860 0.41 -0.6
1,203,005 + A4249_RS05860 0.41 +0.0
1,203,006 - A4249_RS05860 0.41 -0.1
1,203,006 - A4249_RS05860 0.41 -0.0
1,203,006 - A4249_RS05860 0.41 +0.2
1,203,087 + A4249_RS05860 0.50 +0.3
1,203,087 + A4249_RS05860 0.50 +0.5
1,203,087 + A4249_RS05860 0.50 +0.1
1,203,087 + A4249_RS05860 0.50 -0.3
1,203,094 - A4249_RS05860 0.50 +0.0
1,203,137 + A4249_RS05860 0.55 +0.4
1,203,137 + A4249_RS05860 0.55 -0.3
1,203,138 - A4249_RS05860 0.55 +0.1
1,203,138 - A4249_RS05860 0.55 -0.2
1,203,204 + A4249_RS05860 0.62 +1.3
1,203,205 - A4249_RS05860 0.62 -0.5
1,203,209 + A4249_RS05860 0.62 -0.7
1,203,209 + A4249_RS05860 0.62 +0.0
1,203,209 + A4249_RS05860 0.62 +0.7
1,203,210 - A4249_RS05860 0.63 +0.2
1,203,317 + A4249_RS05860 0.74 +0.2
1,203,317 + A4249_RS05860 0.74 +0.9
1,203,317 + A4249_RS05860 0.74 -2.8
1,203,317 + A4249_RS05860 0.74 +0.0
1,203,318 - A4249_RS05860 0.74 -0.6
1,203,318 - A4249_RS05860 0.74 -0.2
1,203,318 - A4249_RS05860 0.74 -0.3
1,203,318 - A4249_RS05860 0.74 +0.2
1,203,318 - A4249_RS05860 0.74 -1.3
1,203,318 - A4249_RS05860 0.74 +0.1
1,203,318 - A4249_RS05860 0.74 +0.4
1,203,318 - A4249_RS05860 0.74 +0.6
1,203,318 - A4249_RS05860 0.74 +0.7
1,203,516 - +0.5
1,203,516 - -0.5
1,203,737 + A4249_RS05870 0.15 +0.8
1,203,737 + A4249_RS05870 0.15 +1.8
1,203,738 - A4249_RS05870 0.15 -0.2
1,203,738 - A4249_RS05870 0.15 -0.3
1,203,738 - A4249_RS05870 0.15 +0.4
1,203,738 - A4249_RS05870 0.15 -0.2
1,203,738 - A4249_RS05870 0.15 +0.1
1,203,806 + A4249_RS05870 0.38 +0.5
1,203,807 - A4249_RS05870 0.38 -1.1
1,203,807 - A4249_RS05870 0.38 +0.0
1,203,807 - A4249_RS05870 0.38 -0.1
1,203,807 - A4249_RS05870 0.38 +0.1
1,203,981 - -0.2
1,203,981 - -0.4
1,203,981 - -0.1
1,204,053 + -1.3
1,204,053 + -0.1
1,204,053 + -1.6
1,204,053 + +1.5
1,204,053 + +0.3
1,204,054 - -0.9
1,204,054 - -0.2
1,204,054 - -0.1
1,204,054 - -0.2
1,204,054 - -0.1
1,204,054 - -0.4
1,204,054 - -0.0
1,204,054 - +0.8
1,204,054 - -0.0
1,204,054 - +1.2
1,204,169 - +0.6
1,204,209 + -1.1
1,204,209 + +0.4
1,204,209 + -0.2
1,204,210 - +0.4
1,204,210 - +1.5
1,204,210 - -0.6
1,204,210 - +0.7
1,204,210 - -0.1
1,204,210 - +0.0
1,204,210 - -0.9
1,204,210 - +0.3
1,204,217 + -1.2
1,204,217 + +0.3
1,204,217 + +0.4
1,204,369 + A4249_RS05880 0.36 +0.7
1,204,369 + A4249_RS05880 0.36 +1.0
1,204,370 - A4249_RS05880 0.36 +0.2
1,204,371 + A4249_RS05880 0.36 -0.2
1,204,371 + A4249_RS05880 0.36 -0.5
1,204,371 + A4249_RS05880 0.36 +0.6
1,204,371 + A4249_RS05880 0.36 -0.9
1,204,371 + A4249_RS05880 0.36 +1.4
1,204,371 + A4249_RS05880 0.36 +0.7
1,204,371 + A4249_RS05880 0.36 +0.1
1,204,371 + A4249_RS05880 0.36 -1.6
1,204,371 + A4249_RS05880 0.36 -1.0
1,204,372 - A4249_RS05880 0.37 -0.2
1,204,372 - A4249_RS05880 0.37 +0.5
1,204,372 - A4249_RS05880 0.37 -0.6
1,204,372 - A4249_RS05880 0.37 +0.1
1,204,372 - A4249_RS05880 0.37 +0.1
1,204,372 - A4249_RS05880 0.37 +0.8
1,204,372 - A4249_RS05880 0.37 -0.2
1,204,675 + +0.6
1,204,675 + -0.4
1,204,675 + -0.5
1,204,675 + +0.5
1,204,675 + -1.6
1,204,675 + +0.2
1,204,675 + -0.3
1,204,676 - -0.6
1,204,676 - -0.8
1,204,676 - +0.6
1,204,676 - +0.1
1,204,676 - -0.5
1,204,676 - -0.1
1,204,676 - -1.5
1,204,676 - -0.2
1,204,825 + A4249_RS05885 0.24 +0.4
1,204,825 + A4249_RS05885 0.24 +0.6
1,204,825 + A4249_RS05885 0.24 -1.1
1,204,826 - A4249_RS05885 0.24 +0.1

Or see this region's nucleotide sequence