Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04775

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04765 and A4249_RS04770 are separated by 144 nucleotidesA4249_RS04770 and A4249_RS04775 overlap by 1 nucleotidesA4249_RS04775 and A4249_RS04780 are separated by 6 nucleotides A4249_RS04765: A4249_RS04765 - ATP-dependent DNA helicase RecG, at 989,159 to 991,246 _RS04765 A4249_RS04770: A4249_RS04770 - succinate dehydrogenase assembly factor 2, at 991,391 to 991,732 _RS04770 A4249_RS04775: A4249_RS04775 - transcription-repair coupling factor, at 991,732 to 995,181 _RS04775 A4249_RS04780: A4249_RS04780 - diguanylate cyclase, at 995,188 to 996,495 _RS04780 Position (kb) 991 992 993 994 995 996Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 990.795 kb on + strand, within A4249_RS04765at 990.796 kb on - strand, within A4249_RS04765at 990.796 kb on - strand, within A4249_RS04765at 990.796 kb on - strand, within A4249_RS04765at 990.839 kb on - strand, within A4249_RS04765at 990.934 kb on + strand, within A4249_RS04765at 991.259 kb on - strandat 991.259 kb on - strandat 991.259 kb on - strandat 991.259 kb on - strandat 991.259 kb on - strandat 991.299 kb on + strandat 991.299 kb on + strandat 991.299 kb on + strandat 991.299 kb on + strandat 991.300 kb on - strandat 991.300 kb on - strandat 991.300 kb on - strandat 992.158 kb on + strand, within A4249_RS04775at 992.158 kb on + strand, within A4249_RS04775at 992.158 kb on + strand, within A4249_RS04775at 992.159 kb on - strand, within A4249_RS04775at 992.176 kb on + strand, within A4249_RS04775at 992.176 kb on + strand, within A4249_RS04775at 992.243 kb on - strand, within A4249_RS04775at 992.243 kb on - strand, within A4249_RS04775at 992.243 kb on - strand, within A4249_RS04775at 992.420 kb on - strand, within A4249_RS04775at 992.420 kb on - strand, within A4249_RS04775at 992.420 kb on - strand, within A4249_RS04775at 992.420 kb on - strand, within A4249_RS04775at 992.459 kb on - strand, within A4249_RS04775at 992.459 kb on - strand, within A4249_RS04775at 992.459 kb on - strand, within A4249_RS04775at 992.459 kb on - strand, within A4249_RS04775at 992.459 kb on - strand, within A4249_RS04775at 992.518 kb on + strand, within A4249_RS04775at 992.518 kb on + strand, within A4249_RS04775at 992.518 kb on + strand, within A4249_RS04775at 992.518 kb on + strand, within A4249_RS04775at 992.519 kb on - strand, within A4249_RS04775at 992.545 kb on + strand, within A4249_RS04775at 992.546 kb on - strand, within A4249_RS04775at 992.629 kb on + strand, within A4249_RS04775at 992.629 kb on + strand, within A4249_RS04775at 992.629 kb on + strand, within A4249_RS04775at 992.630 kb on - strand, within A4249_RS04775at 992.630 kb on - strand, within A4249_RS04775at 992.630 kb on - strand, within A4249_RS04775at 992.630 kb on - strand, within A4249_RS04775at 992.704 kb on + strand, within A4249_RS04775at 992.704 kb on + strand, within A4249_RS04775at 993.025 kb on + strand, within A4249_RS04775at 993.025 kb on + strand, within A4249_RS04775at 993.218 kb on - strand, within A4249_RS04775at 993.278 kb on - strand, within A4249_RS04775at 993.611 kb on + strand, within A4249_RS04775at 993.734 kb on - strand, within A4249_RS04775at 994.102 kb on + strand, within A4249_RS04775at 994.103 kb on - strand, within A4249_RS04775at 994.103 kb on - strand, within A4249_RS04775at 994.174 kb on + strand, within A4249_RS04775at 994.174 kb on + strand, within A4249_RS04775at 994.175 kb on - strand, within A4249_RS04775at 994.175 kb on - strand, within A4249_RS04775at 994.175 kb on - strand, within A4249_RS04775at 994.177 kb on + strand, within A4249_RS04775at 994.178 kb on - strand, within A4249_RS04775at 994.178 kb on - strand, within A4249_RS04775at 994.178 kb on - strand, within A4249_RS04775at 994.309 kb on + strand, within A4249_RS04775at 994.309 kb on + strand, within A4249_RS04775at 994.309 kb on + strand, within A4249_RS04775at 994.309 kb on + strand, within A4249_RS04775at 994.309 kb on + strand, within A4249_RS04775at 994.321 kb on + strand, within A4249_RS04775at 994.321 kb on + strand, within A4249_RS04775at 994.321 kb on + strand, within A4249_RS04775at 994.322 kb on - strand, within A4249_RS04775at 994.341 kb on + strand, within A4249_RS04775at 994.341 kb on + strand, within A4249_RS04775at 994.342 kb on - strand, within A4249_RS04775at 994.342 kb on - strand, within A4249_RS04775at 994.342 kb on - strand, within A4249_RS04775at 994.380 kb on + strand, within A4249_RS04775at 994.381 kb on - strand, within A4249_RS04775at 994.427 kb on - strand, within A4249_RS04775at 994.475 kb on - strand, within A4249_RS04775at 994.661 kb on - strand, within A4249_RS04775at 994.661 kb on - strand, within A4249_RS04775at 994.780 kb on + strand, within A4249_RS04775at 994.781 kb on - strand, within A4249_RS04775at 994.781 kb on - strand, within A4249_RS04775at 994.781 kb on - strand, within A4249_RS04775at 994.813 kb on + strand, within A4249_RS04775at 995.072 kb on + strandat 995.072 kb on + strandat 995.073 kb on - strandat 995.179 kb on + strandat 995.179 kb on + strandat 995.179 kb on + strandat 995.180 kb on - strandat 995.180 kb on - strandat 995.180 kb on - strandat 995.180 kb on - strandat 995.825 kb on + strand, within A4249_RS04780at 995.825 kb on + strand, within A4249_RS04780at 995.825 kb on + strand, within A4249_RS04780at 995.825 kb on + strand, within A4249_RS04780at 995.825 kb on + strand, within A4249_RS04780at 995.825 kb on + strand, within A4249_RS04780at 995.826 kb on - strand, within A4249_RS04780at 995.826 kb on - strand, within A4249_RS04780at 995.842 kb on - strand, within A4249_RS04780at 995.846 kb on + strand, within A4249_RS04780at 995.846 kb on + strand, within A4249_RS04780at 995.846 kb on + strand, within A4249_RS04780at 995.846 kb on + strand, within A4249_RS04780at 995.846 kb on + strand, within A4249_RS04780at 995.846 kb on + strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.847 kb on - strand, within A4249_RS04780at 995.948 kb on + strand, within A4249_RS04780at 995.948 kb on + strand, within A4249_RS04780at 995.948 kb on + strand, within A4249_RS04780at 995.948 kb on + strand, within A4249_RS04780at 995.948 kb on + strand, within A4249_RS04780at 995.949 kb on - strand, within A4249_RS04780at 995.949 kb on - strand, within A4249_RS04780at 995.963 kb on + strand, within A4249_RS04780at 995.964 kb on - strand, within A4249_RS04780at 996.134 kb on + strand, within A4249_RS04780at 996.135 kb on - strand, within A4249_RS04780

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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990,795 + A4249_RS04765 0.78 -0.6
990,796 - A4249_RS04765 0.78 +1.6
990,796 - A4249_RS04765 0.78 +0.2
990,796 - A4249_RS04765 0.78 +0.1
990,839 - A4249_RS04765 0.80 -1.8
990,934 + A4249_RS04765 0.85 +0.4
991,259 - -0.2
991,259 - +0.7
991,259 - -0.1
991,259 - +0.1
991,259 - -2.4
991,299 + +0.2
991,299 + +0.1
991,299 + +0.9
991,299 + -0.5
991,300 - -0.1
991,300 - +0.0
991,300 - +0.1
992,158 + A4249_RS04775 0.12 -0.0
992,158 + A4249_RS04775 0.12 -0.9
992,158 + A4249_RS04775 0.12 -1.6
992,159 - A4249_RS04775 0.12 -0.3
992,176 + A4249_RS04775 0.13 +1.2
992,176 + A4249_RS04775 0.13 +0.2
992,243 - A4249_RS04775 0.15 -0.0
992,243 - A4249_RS04775 0.15 -0.4
992,243 - A4249_RS04775 0.15 -0.2
992,420 - A4249_RS04775 0.20 +1.1
992,420 - A4249_RS04775 0.20 +0.6
992,420 - A4249_RS04775 0.20 -1.3
992,420 - A4249_RS04775 0.20 +0.6
992,459 - A4249_RS04775 0.21 -0.4
992,459 - A4249_RS04775 0.21 -1.0
992,459 - A4249_RS04775 0.21 -0.4
992,459 - A4249_RS04775 0.21 -2.6
992,459 - A4249_RS04775 0.21 +0.9
992,518 + A4249_RS04775 0.23 +1.7
992,518 + A4249_RS04775 0.23 +0.8
992,518 + A4249_RS04775 0.23 +0.8
992,518 + A4249_RS04775 0.23 +0.2
992,519 - A4249_RS04775 0.23 +0.3
992,545 + A4249_RS04775 0.24 +0.2
992,546 - A4249_RS04775 0.24 +0.3
992,629 + A4249_RS04775 0.26 -0.3
992,629 + A4249_RS04775 0.26 -0.0
992,629 + A4249_RS04775 0.26 +0.6
992,630 - A4249_RS04775 0.26 -0.1
992,630 - A4249_RS04775 0.26 -0.8
992,630 - A4249_RS04775 0.26 -0.4
992,630 - A4249_RS04775 0.26 -0.4
992,704 + A4249_RS04775 0.28 +0.2
992,704 + A4249_RS04775 0.28 -0.1
993,025 + A4249_RS04775 0.37 -0.4
993,025 + A4249_RS04775 0.37 +0.4
993,218 - A4249_RS04775 0.43 -0.3
993,278 - A4249_RS04775 0.45 +0.2
993,611 + A4249_RS04775 0.54 -0.4
993,734 - A4249_RS04775 0.58 +0.4
994,102 + A4249_RS04775 0.69 +0.2
994,103 - A4249_RS04775 0.69 +0.6
994,103 - A4249_RS04775 0.69 -0.1
994,174 + A4249_RS04775 0.71 +0.1
994,174 + A4249_RS04775 0.71 +0.6
994,175 - A4249_RS04775 0.71 -0.0
994,175 - A4249_RS04775 0.71 +0.0
994,175 - A4249_RS04775 0.71 -0.8
994,177 + A4249_RS04775 0.71 -1.3
994,178 - A4249_RS04775 0.71 +0.9
994,178 - A4249_RS04775 0.71 +0.9
994,178 - A4249_RS04775 0.71 +0.4
994,309 + A4249_RS04775 0.75 +0.7
994,309 + A4249_RS04775 0.75 -0.6
994,309 + A4249_RS04775 0.75 +0.2
994,309 + A4249_RS04775 0.75 +0.6
994,309 + A4249_RS04775 0.75 +0.9
994,321 + A4249_RS04775 0.75 -1.0
994,321 + A4249_RS04775 0.75 +0.9
994,321 + A4249_RS04775 0.75 -2.4
994,322 - A4249_RS04775 0.75 +1.4
994,341 + A4249_RS04775 0.76 +0.5
994,341 + A4249_RS04775 0.76 -1.5
994,342 - A4249_RS04775 0.76 -0.6
994,342 - A4249_RS04775 0.76 -1.4
994,342 - A4249_RS04775 0.76 +0.6
994,380 + A4249_RS04775 0.77 -1.0
994,381 - A4249_RS04775 0.77 -0.1
994,427 - A4249_RS04775 0.78 +0.5
994,475 - A4249_RS04775 0.80 +0.3
994,661 - A4249_RS04775 0.85 +0.2
994,661 - A4249_RS04775 0.85 +0.6
994,780 + A4249_RS04775 0.88 -1.1
994,781 - A4249_RS04775 0.88 -2.9
994,781 - A4249_RS04775 0.88 -1.3
994,781 - A4249_RS04775 0.88 +0.8
994,813 + A4249_RS04775 0.89 +1.6
995,072 + +0.8
995,072 + +2.7
995,073 - -0.3
995,179 + -1.0
995,179 + +0.7
995,179 + +0.1
995,180 - +0.2
995,180 - +0.6
995,180 - -0.4
995,180 - -0.1
995,825 + A4249_RS04780 0.49 -0.7
995,825 + A4249_RS04780 0.49 -1.9
995,825 + A4249_RS04780 0.49 +0.1
995,825 + A4249_RS04780 0.49 -0.7
995,825 + A4249_RS04780 0.49 +0.0
995,825 + A4249_RS04780 0.49 -0.3
995,826 - A4249_RS04780 0.49 +0.1
995,826 - A4249_RS04780 0.49 -0.2
995,842 - A4249_RS04780 0.50 -0.0
995,846 + A4249_RS04780 0.50 -0.4
995,846 + A4249_RS04780 0.50 -0.8
995,846 + A4249_RS04780 0.50 -0.5
995,846 + A4249_RS04780 0.50 +0.4
995,846 + A4249_RS04780 0.50 +1.8
995,846 + A4249_RS04780 0.50 +0.0
995,847 - A4249_RS04780 0.50 +0.0
995,847 - A4249_RS04780 0.50 +0.1
995,847 - A4249_RS04780 0.50 +0.4
995,847 - A4249_RS04780 0.50 -0.7
995,847 - A4249_RS04780 0.50 +0.6
995,847 - A4249_RS04780 0.50 -0.3
995,847 - A4249_RS04780 0.50 +0.3
995,847 - A4249_RS04780 0.50 -0.8
995,847 - A4249_RS04780 0.50 +0.9
995,948 + A4249_RS04780 0.58 +0.2
995,948 + A4249_RS04780 0.58 -0.9
995,948 + A4249_RS04780 0.58 +0.1
995,948 + A4249_RS04780 0.58 -0.4
995,948 + A4249_RS04780 0.58 -0.0
995,949 - A4249_RS04780 0.58 +1.2
995,949 - A4249_RS04780 0.58 +0.3
995,963 + A4249_RS04780 0.59 -0.1
995,964 - A4249_RS04780 0.59 -2.0
996,134 + A4249_RS04780 0.72 -0.5
996,135 - A4249_RS04780 0.72 -0.6

Or see this region's nucleotide sequence