Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04315

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04305 and A4249_RS04310 are separated by 316 nucleotidesA4249_RS04310 and A4249_RS04315 are separated by 8 nucleotidesA4249_RS04315 and A4249_RS04320 are separated by 121 nucleotides A4249_RS04305: A4249_RS04305 - RcnB family protein, at 892,061 to 892,645 _RS04305 A4249_RS04310: A4249_RS04310 - hypothetical protein, at 892,962 to 893,267 _RS04310 A4249_RS04315: A4249_RS04315 - polysaccharide biosynthesis/export family protein, at 893,276 to 894,025 _RS04315 A4249_RS04320: A4249_RS04320 - chain-length determining protein, at 894,147 to 895,586 _RS04320 Position (kb) 893 894 895Strain fitness (log2 ratio) -2 -1 0 1at 892.278 kb on + strand, within A4249_RS04305at 892.278 kb on + strand, within A4249_RS04305at 892.279 kb on - strand, within A4249_RS04305at 892.279 kb on - strand, within A4249_RS04305at 892.290 kb on + strand, within A4249_RS04305at 892.291 kb on - strand, within A4249_RS04305at 892.291 kb on - strand, within A4249_RS04305at 892.291 kb on - strand, within A4249_RS04305at 892.317 kb on + strand, within A4249_RS04305at 892.317 kb on + strand, within A4249_RS04305at 892.317 kb on + strand, within A4249_RS04305at 892.318 kb on - strand, within A4249_RS04305at 892.318 kb on - strand, within A4249_RS04305at 892.449 kb on + strand, within A4249_RS04305at 892.449 kb on + strand, within A4249_RS04305at 892.449 kb on + strand, within A4249_RS04305at 892.450 kb on - strand, within A4249_RS04305at 892.450 kb on - strand, within A4249_RS04305at 892.450 kb on - strand, within A4249_RS04305at 892.467 kb on + strand, within A4249_RS04305at 892.468 kb on - strand, within A4249_RS04305at 892.548 kb on + strand, within A4249_RS04305at 892.548 kb on + strand, within A4249_RS04305at 892.787 kb on - strandat 892.787 kb on - strandat 892.874 kb on + strandat 892.955 kb on + strandat 892.956 kb on - strandat 892.956 kb on - strandat 892.956 kb on - strandat 892.956 kb on - strandat 892.956 kb on - strandat 892.956 kb on - strandat 893.067 kb on + strand, within A4249_RS04310at 893.067 kb on + strand, within A4249_RS04310at 893.067 kb on + strand, within A4249_RS04310at 893.067 kb on + strand, within A4249_RS04310at 893.068 kb on - strand, within A4249_RS04310at 893.068 kb on - strand, within A4249_RS04310at 893.068 kb on - strand, within A4249_RS04310at 893.068 kb on - strand, within A4249_RS04310at 893.068 kb on - strand, within A4249_RS04310at 893.164 kb on - strand, within A4249_RS04310at 893.232 kb on + strand, within A4249_RS04310at 893.233 kb on - strand, within A4249_RS04310at 893.233 kb on - strand, within A4249_RS04310at 893.233 kb on - strand, within A4249_RS04310at 893.233 kb on - strand, within A4249_RS04310at 893.265 kb on + strandat 893.277 kb on + strandat 893.277 kb on + strandat 893.277 kb on + strandat 893.277 kb on + strandat 893.278 kb on - strandat 893.319 kb on + strandat 893.319 kb on + strandat 893.319 kb on + strandat 893.319 kb on + strandat 893.319 kb on + strandat 893.320 kb on - strandat 893.320 kb on - strandat 893.320 kb on - strandat 893.557 kb on - strand, within A4249_RS04315at 893.557 kb on - strand, within A4249_RS04315at 893.557 kb on - strand, within A4249_RS04315at 893.678 kb on - strand, within A4249_RS04315at 893.682 kb on + strand, within A4249_RS04315at 893.682 kb on + strand, within A4249_RS04315at 893.682 kb on + strand, within A4249_RS04315at 893.682 kb on + strand, within A4249_RS04315at 893.683 kb on - strand, within A4249_RS04315at 893.683 kb on - strand, within A4249_RS04315at 893.683 kb on - strand, within A4249_RS04315at 893.683 kb on - strand, within A4249_RS04315at 893.683 kb on - strand, within A4249_RS04315at 893.683 kb on - strand, within A4249_RS04315at 893.850 kb on + strand, within A4249_RS04315at 893.850 kb on + strand, within A4249_RS04315at 893.850 kb on + strand, within A4249_RS04315at 893.851 kb on - strand, within A4249_RS04315at 893.851 kb on - strand, within A4249_RS04315at 893.851 kb on - strand, within A4249_RS04315at 893.851 kb on - strand, within A4249_RS04315at 893.904 kb on + strand, within A4249_RS04315at 893.904 kb on + strand, within A4249_RS04315at 893.905 kb on - strand, within A4249_RS04315at 893.905 kb on - strand, within A4249_RS04315at 894.052 kb on + strandat 894.052 kb on + strandat 894.053 kb on - strandat 894.053 kb on - strandat 894.078 kb on + strandat 894.297 kb on + strand, within A4249_RS04320at 894.297 kb on + strand, within A4249_RS04320at 894.298 kb on - strand, within A4249_RS04320at 894.298 kb on - strand, within A4249_RS04320at 894.298 kb on - strand, within A4249_RS04320at 894.298 kb on - strand, within A4249_RS04320at 894.339 kb on + strand, within A4249_RS04320at 894.339 kb on + strand, within A4249_RS04320at 894.339 kb on + strand, within A4249_RS04320at 894.339 kb on + strand, within A4249_RS04320at 894.339 kb on + strand, within A4249_RS04320at 894.339 kb on + strand, within A4249_RS04320at 894.339 kb on + strand, within A4249_RS04320at 894.339 kb on + strand, within A4249_RS04320at 894.339 kb on + strand, within A4249_RS04320at 894.339 kb on + strand, within A4249_RS04320at 894.340 kb on - strand, within A4249_RS04320at 894.340 kb on - strand, within A4249_RS04320at 894.340 kb on - strand, within A4249_RS04320at 894.340 kb on - strand, within A4249_RS04320at 894.340 kb on - strand, within A4249_RS04320at 894.340 kb on - strand, within A4249_RS04320at 894.340 kb on - strand, within A4249_RS04320at 894.340 kb on - strand, within A4249_RS04320at 894.340 kb on - strand, within A4249_RS04320at 894.340 kb on - strand, within A4249_RS04320at 894.345 kb on + strand, within A4249_RS04320at 894.345 kb on + strand, within A4249_RS04320at 894.345 kb on + strand, within A4249_RS04320at 894.345 kb on + strand, within A4249_RS04320at 894.345 kb on + strand, within A4249_RS04320at 894.346 kb on - strand, within A4249_RS04320at 894.346 kb on - strand, within A4249_RS04320at 894.594 kb on + strand, within A4249_RS04320at 894.594 kb on + strand, within A4249_RS04320at 894.594 kb on + strand, within A4249_RS04320at 894.594 kb on + strand, within A4249_RS04320at 894.594 kb on + strand, within A4249_RS04320at 894.595 kb on - strand, within A4249_RS04320at 894.595 kb on - strand, within A4249_RS04320at 894.651 kb on + strand, within A4249_RS04320at 894.651 kb on + strand, within A4249_RS04320at 894.651 kb on + strand, within A4249_RS04320at 894.651 kb on + strand, within A4249_RS04320at 894.651 kb on - strand, within A4249_RS04320at 894.652 kb on - strand, within A4249_RS04320at 894.652 kb on - strand, within A4249_RS04320at 894.652 kb on - strand, within A4249_RS04320at 894.652 kb on - strand, within A4249_RS04320at 894.660 kb on + strand, within A4249_RS04320at 894.660 kb on + strand, within A4249_RS04320at 894.660 kb on + strand, within A4249_RS04320at 894.660 kb on + strand, within A4249_RS04320at 894.661 kb on - strand, within A4249_RS04320at 894.734 kb on + strand, within A4249_RS04320at 894.750 kb on + strand, within A4249_RS04320at 894.750 kb on + strand, within A4249_RS04320at 894.819 kb on + strand, within A4249_RS04320at 894.819 kb on + strand, within A4249_RS04320at 894.819 kb on + strand, within A4249_RS04320at 894.819 kb on + strand, within A4249_RS04320at 894.819 kb on + strand, within A4249_RS04320at 894.820 kb on - strand, within A4249_RS04320at 894.820 kb on - strand, within A4249_RS04320at 894.820 kb on - strand, within A4249_RS04320at 894.820 kb on - strand, within A4249_RS04320at 894.820 kb on - strand, within A4249_RS04320at 894.820 kb on - strand, within A4249_RS04320at 894.884 kb on + strand, within A4249_RS04320at 894.885 kb on - strand, within A4249_RS04320at 894.885 kb on - strand, within A4249_RS04320at 895.008 kb on + strand, within A4249_RS04320at 895.008 kb on + strand, within A4249_RS04320

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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892,278 + A4249_RS04305 0.37 -0.2
892,278 + A4249_RS04305 0.37 -0.7
892,279 - A4249_RS04305 0.37 +0.1
892,279 - A4249_RS04305 0.37 -0.6
892,290 + A4249_RS04305 0.39 +0.4
892,291 - A4249_RS04305 0.39 +0.3
892,291 - A4249_RS04305 0.39 -0.2
892,291 - A4249_RS04305 0.39 -0.2
892,317 + A4249_RS04305 0.44 +0.2
892,317 + A4249_RS04305 0.44 +0.2
892,317 + A4249_RS04305 0.44 +0.2
892,318 - A4249_RS04305 0.44 -0.1
892,318 - A4249_RS04305 0.44 -0.1
892,449 + A4249_RS04305 0.66 -0.1
892,449 + A4249_RS04305 0.66 -0.5
892,449 + A4249_RS04305 0.66 +0.7
892,450 - A4249_RS04305 0.66 -0.4
892,450 - A4249_RS04305 0.66 +0.4
892,450 - A4249_RS04305 0.66 -1.2
892,467 + A4249_RS04305 0.69 +0.0
892,468 - A4249_RS04305 0.70 -0.0
892,548 + A4249_RS04305 0.83 -0.0
892,548 + A4249_RS04305 0.83 +0.9
892,787 - -0.7
892,787 - -0.1
892,874 + +0.3
892,955 + -0.8
892,956 - +0.3
892,956 - -1.2
892,956 - -0.7
892,956 - +0.2
892,956 - +0.4
892,956 - +0.2
893,067 + A4249_RS04310 0.34 -0.1
893,067 + A4249_RS04310 0.34 +0.6
893,067 + A4249_RS04310 0.34 +0.7
893,067 + A4249_RS04310 0.34 -2.1
893,068 - A4249_RS04310 0.35 +0.6
893,068 - A4249_RS04310 0.35 +0.7
893,068 - A4249_RS04310 0.35 -0.4
893,068 - A4249_RS04310 0.35 +0.5
893,068 - A4249_RS04310 0.35 -0.5
893,164 - A4249_RS04310 0.66 -0.1
893,232 + A4249_RS04310 0.88 -0.2
893,233 - A4249_RS04310 0.89 +0.4
893,233 - A4249_RS04310 0.89 +0.7
893,233 - A4249_RS04310 0.89 -0.0
893,233 - A4249_RS04310 0.89 -0.5
893,265 + +0.7
893,277 + +0.7
893,277 + -0.4
893,277 + +0.1
893,277 + -0.1
893,278 - -0.4
893,319 + +0.2
893,319 + -0.6
893,319 + +0.2
893,319 + +1.4
893,319 + +0.2
893,320 - +0.8
893,320 - +1.0
893,320 - -0.2
893,557 - A4249_RS04315 0.37 -0.5
893,557 - A4249_RS04315 0.37 -0.8
893,557 - A4249_RS04315 0.37 -0.3
893,678 - A4249_RS04315 0.54 -1.9
893,682 + A4249_RS04315 0.54 -0.6
893,682 + A4249_RS04315 0.54 -0.6
893,682 + A4249_RS04315 0.54 +0.5
893,682 + A4249_RS04315 0.54 -0.5
893,683 - A4249_RS04315 0.54 -0.9
893,683 - A4249_RS04315 0.54 -0.6
893,683 - A4249_RS04315 0.54 -0.7
893,683 - A4249_RS04315 0.54 -1.0
893,683 - A4249_RS04315 0.54 -0.4
893,683 - A4249_RS04315 0.54 -0.3
893,850 + A4249_RS04315 0.77 +0.2
893,850 + A4249_RS04315 0.77 +0.4
893,850 + A4249_RS04315 0.77 -0.2
893,851 - A4249_RS04315 0.77 +0.4
893,851 - A4249_RS04315 0.77 +0.5
893,851 - A4249_RS04315 0.77 -0.2
893,851 - A4249_RS04315 0.77 +0.4
893,904 + A4249_RS04315 0.84 +0.4
893,904 + A4249_RS04315 0.84 -0.8
893,905 - A4249_RS04315 0.84 +0.2
893,905 - A4249_RS04315 0.84 -0.3
894,052 + +1.4
894,052 + -0.5
894,053 - -0.1
894,053 - -0.1
894,078 + +0.8
894,297 + A4249_RS04320 0.10 -0.7
894,297 + A4249_RS04320 0.10 -0.6
894,298 - A4249_RS04320 0.10 -0.1
894,298 - A4249_RS04320 0.10 -0.0
894,298 - A4249_RS04320 0.10 +0.5
894,298 - A4249_RS04320 0.10 -0.9
894,339 + A4249_RS04320 0.13 -0.1
894,339 + A4249_RS04320 0.13 +0.0
894,339 + A4249_RS04320 0.13 -2.2
894,339 + A4249_RS04320 0.13 +0.0
894,339 + A4249_RS04320 0.13 +0.6
894,339 + A4249_RS04320 0.13 +0.8
894,339 + A4249_RS04320 0.13 -0.0
894,339 + A4249_RS04320 0.13 +0.4
894,339 + A4249_RS04320 0.13 -0.1
894,339 + A4249_RS04320 0.13 +0.3
894,340 - A4249_RS04320 0.13 +0.3
894,340 - A4249_RS04320 0.13 -0.9
894,340 - A4249_RS04320 0.13 +0.6
894,340 - A4249_RS04320 0.13 +0.2
894,340 - A4249_RS04320 0.13 +1.1
894,340 - A4249_RS04320 0.13 -0.2
894,340 - A4249_RS04320 0.13 -0.3
894,340 - A4249_RS04320 0.13 +0.1
894,340 - A4249_RS04320 0.13 +0.1
894,340 - A4249_RS04320 0.13 +0.5
894,345 + A4249_RS04320 0.14 -0.4
894,345 + A4249_RS04320 0.14 -0.9
894,345 + A4249_RS04320 0.14 +0.3
894,345 + A4249_RS04320 0.14 -0.2
894,345 + A4249_RS04320 0.14 -1.0
894,346 - A4249_RS04320 0.14 -2.0
894,346 - A4249_RS04320 0.14 +1.2
894,594 + A4249_RS04320 0.31 +0.1
894,594 + A4249_RS04320 0.31 -0.7
894,594 + A4249_RS04320 0.31 -0.7
894,594 + A4249_RS04320 0.31 -0.7
894,594 + A4249_RS04320 0.31 +0.6
894,595 - A4249_RS04320 0.31 -0.2
894,595 - A4249_RS04320 0.31 +1.6
894,651 + A4249_RS04320 0.35 -0.4
894,651 + A4249_RS04320 0.35 -0.5
894,651 + A4249_RS04320 0.35 +1.6
894,651 + A4249_RS04320 0.35 -0.1
894,651 - A4249_RS04320 0.35 -0.3
894,652 - A4249_RS04320 0.35 -0.6
894,652 - A4249_RS04320 0.35 +0.2
894,652 - A4249_RS04320 0.35 +0.5
894,652 - A4249_RS04320 0.35 +1.3
894,660 + A4249_RS04320 0.36 +0.2
894,660 + A4249_RS04320 0.36 +0.5
894,660 + A4249_RS04320 0.36 -1.2
894,660 + A4249_RS04320 0.36 -1.0
894,661 - A4249_RS04320 0.36 +0.2
894,734 + A4249_RS04320 0.41 +1.1
894,750 + A4249_RS04320 0.42 -0.5
894,750 + A4249_RS04320 0.42 +0.7
894,819 + A4249_RS04320 0.47 -0.1
894,819 + A4249_RS04320 0.47 +0.6
894,819 + A4249_RS04320 0.47 +0.5
894,819 + A4249_RS04320 0.47 +0.6
894,819 + A4249_RS04320 0.47 +0.7
894,820 - A4249_RS04320 0.47 -0.5
894,820 - A4249_RS04320 0.47 +0.3
894,820 - A4249_RS04320 0.47 -0.6
894,820 - A4249_RS04320 0.47 +0.2
894,820 - A4249_RS04320 0.47 +0.2
894,820 - A4249_RS04320 0.47 +1.1
894,884 + A4249_RS04320 0.51 -0.8
894,885 - A4249_RS04320 0.51 -1.0
894,885 - A4249_RS04320 0.51 +0.3
895,008 + A4249_RS04320 0.60 -0.2
895,008 + A4249_RS04320 0.60 +0.1

Or see this region's nucleotide sequence