Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04135

Experiment: Uracil 0.8921 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04130 and A4249_RS04135 are separated by 110 nucleotidesA4249_RS04135 and A4249_RS04140 overlap by 16 nucleotidesA4249_RS04140 and A4249_RS04145 overlap by 4 nucleotides A4249_RS04130: A4249_RS04130 - beta-eliminating lyase-related protein, at 858,797 to 859,813 _RS04130 A4249_RS04135: A4249_RS04135 - ABC transporter ATP-binding protein/permease, at 859,924 to 861,774 _RS04135 A4249_RS04140: A4249_RS04140 - chemotaxis protein CheE, at 861,759 to 862,238 _RS04140 A4249_RS04145: A4249_RS04145 - response regulator, at 862,235 to 862,786 _RS04145 Position (kb) 859 860 861 862Strain fitness (log2 ratio) -3 -2 -1 0 1at 859.022 kb on + strand, within A4249_RS04130at 859.022 kb on + strand, within A4249_RS04130at 859.022 kb on + strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.023 kb on - strand, within A4249_RS04130at 859.229 kb on + strand, within A4249_RS04130at 859.229 kb on + strand, within A4249_RS04130at 859.229 kb on + strand, within A4249_RS04130at 859.229 kb on + strand, within A4249_RS04130at 859.230 kb on - strand, within A4249_RS04130at 859.230 kb on - strand, within A4249_RS04130at 859.230 kb on - strand, within A4249_RS04130at 859.242 kb on - strand, within A4249_RS04130at 859.292 kb on + strand, within A4249_RS04130at 859.293 kb on - strand, within A4249_RS04130at 859.578 kb on + strand, within A4249_RS04130at 859.578 kb on + strand, within A4249_RS04130at 859.715 kb on + strandat 859.715 kb on + strandat 859.715 kb on + strandat 859.716 kb on - strandat 859.819 kb on + strandat 859.820 kb on - strandat 859.820 kb on - strandat 859.872 kb on + strandat 859.890 kb on - strandat 860.232 kb on + strand, within A4249_RS04135at 860.232 kb on + strand, within A4249_RS04135at 860.232 kb on + strand, within A4249_RS04135at 860.232 kb on + strand, within A4249_RS04135at 860.232 kb on + strand, within A4249_RS04135at 860.232 kb on + strand, within A4249_RS04135at 860.233 kb on - strand, within A4249_RS04135at 860.233 kb on - strand, within A4249_RS04135at 860.233 kb on - strand, within A4249_RS04135at 860.233 kb on - strand, within A4249_RS04135at 860.233 kb on - strand, within A4249_RS04135at 860.233 kb on - strand, within A4249_RS04135at 860.233 kb on - strand, within A4249_RS04135at 860.246 kb on + strand, within A4249_RS04135at 860.246 kb on + strand, within A4249_RS04135at 860.246 kb on + strand, within A4249_RS04135at 860.247 kb on - strand, within A4249_RS04135at 860.247 kb on - strand, within A4249_RS04135at 860.473 kb on + strand, within A4249_RS04135at 860.473 kb on + strand, within A4249_RS04135at 860.473 kb on + strand, within A4249_RS04135at 860.474 kb on - strand, within A4249_RS04135at 860.474 kb on - strand, within A4249_RS04135at 860.474 kb on - strand, within A4249_RS04135at 860.474 kb on - strand, within A4249_RS04135at 860.518 kb on + strand, within A4249_RS04135at 860.518 kb on + strand, within A4249_RS04135at 860.518 kb on + strand, within A4249_RS04135at 860.518 kb on + strand, within A4249_RS04135at 860.518 kb on + strand, within A4249_RS04135at 860.519 kb on - strand, within A4249_RS04135at 860.519 kb on - strand, within A4249_RS04135at 860.519 kb on - strand, within A4249_RS04135at 860.519 kb on - strand, within A4249_RS04135at 860.519 kb on - strand, within A4249_RS04135at 860.626 kb on + strand, within A4249_RS04135at 860.626 kb on + strand, within A4249_RS04135at 860.626 kb on + strand, within A4249_RS04135at 860.626 kb on + strand, within A4249_RS04135at 860.626 kb on + strand, within A4249_RS04135at 860.626 kb on + strand, within A4249_RS04135at 860.627 kb on - strand, within A4249_RS04135at 860.627 kb on - strand, within A4249_RS04135at 860.627 kb on - strand, within A4249_RS04135at 860.674 kb on + strand, within A4249_RS04135at 860.674 kb on + strand, within A4249_RS04135at 860.674 kb on + strand, within A4249_RS04135at 860.674 kb on + strand, within A4249_RS04135at 860.674 kb on + strand, within A4249_RS04135at 860.674 kb on + strand, within A4249_RS04135at 860.675 kb on - strand, within A4249_RS04135at 860.675 kb on - strand, within A4249_RS04135at 860.695 kb on + strand, within A4249_RS04135at 860.696 kb on - strand, within A4249_RS04135at 860.863 kb on + strand, within A4249_RS04135at 860.867 kb on + strand, within A4249_RS04135at 860.867 kb on + strand, within A4249_RS04135at 860.867 kb on + strand, within A4249_RS04135at 860.867 kb on + strand, within A4249_RS04135at 860.867 kb on + strand, within A4249_RS04135at 860.867 kb on + strand, within A4249_RS04135at 860.868 kb on - strand, within A4249_RS04135at 860.868 kb on - strand, within A4249_RS04135at 860.868 kb on - strand, within A4249_RS04135at 860.868 kb on - strand, within A4249_RS04135at 860.869 kb on + strand, within A4249_RS04135at 860.869 kb on + strand, within A4249_RS04135at 860.869 kb on + strand, within A4249_RS04135at 860.869 kb on + strand, within A4249_RS04135at 860.869 kb on + strand, within A4249_RS04135at 860.870 kb on - strand, within A4249_RS04135at 860.870 kb on - strand, within A4249_RS04135at 860.870 kb on - strand, within A4249_RS04135at 860.870 kb on - strand, within A4249_RS04135at 861.077 kb on + strand, within A4249_RS04135at 861.078 kb on - strand, within A4249_RS04135at 861.078 kb on - strand, within A4249_RS04135at 861.094 kb on + strand, within A4249_RS04135at 861.094 kb on + strand, within A4249_RS04135at 861.715 kb on + strandat 861.715 kb on + strandat 861.715 kb on + strandat 861.715 kb on + strandat 861.716 kb on - strandat 861.716 kb on - strandat 861.798 kb on + strandat 861.798 kb on + strandat 861.799 kb on - strandat 861.799 kb on - strandat 861.799 kb on - strandat 861.799 kb on - strandat 861.948 kb on + strand, within A4249_RS04140at 861.948 kb on + strand, within A4249_RS04140at 861.948 kb on + strand, within A4249_RS04140at 861.948 kb on + strand, within A4249_RS04140at 861.948 kb on + strand, within A4249_RS04140at 861.949 kb on - strand, within A4249_RS04140at 861.949 kb on - strand, within A4249_RS04140at 861.949 kb on - strand, within A4249_RS04140at 862.024 kb on + strand, within A4249_RS04140at 862.025 kb on - strand, within A4249_RS04140at 862.089 kb on - strand, within A4249_RS04140at 862.089 kb on - strand, within A4249_RS04140at 862.238 kb on + strandat 862.238 kb on + strandat 862.238 kb on + strandat 862.239 kb on - strandat 862.302 kb on + strand, within A4249_RS04145at 862.302 kb on + strand, within A4249_RS04145at 862.302 kb on + strand, within A4249_RS04145at 862.302 kb on + strand, within A4249_RS04145at 862.303 kb on - strand, within A4249_RS04145at 862.338 kb on + strand, within A4249_RS04145at 862.338 kb on + strand, within A4249_RS04145at 862.339 kb on - strand, within A4249_RS04145at 862.339 kb on - strand, within A4249_RS04145at 862.339 kb on - strand, within A4249_RS04145at 862.633 kb on + strand, within A4249_RS04145at 862.633 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.650 kb on + strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145at 862.651 kb on - strand, within A4249_RS04145

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Per-strain Table

Position Strand Gene LocusTag Fraction Uracil 0.8921 mM (C)
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859,022 + A4249_RS04130 0.22 +0.7
859,022 + A4249_RS04130 0.22 -0.3
859,022 + A4249_RS04130 0.22 +0.1
859,023 - A4249_RS04130 0.22 -0.4
859,023 - A4249_RS04130 0.22 -0.2
859,023 - A4249_RS04130 0.22 +0.5
859,023 - A4249_RS04130 0.22 -0.8
859,023 - A4249_RS04130 0.22 +0.2
859,023 - A4249_RS04130 0.22 -0.0
859,023 - A4249_RS04130 0.22 -0.2
859,023 - A4249_RS04130 0.22 -0.7
859,023 - A4249_RS04130 0.22 -0.5
859,023 - A4249_RS04130 0.22 +0.6
859,023 - A4249_RS04130 0.22 -0.1
859,023 - A4249_RS04130 0.22 +1.2
859,229 + A4249_RS04130 0.42 -0.2
859,229 + A4249_RS04130 0.42 -1.2
859,229 + A4249_RS04130 0.42 -0.3
859,229 + A4249_RS04130 0.42 -0.5
859,230 - A4249_RS04130 0.43 +0.5
859,230 - A4249_RS04130 0.43 +0.2
859,230 - A4249_RS04130 0.43 -1.3
859,242 - A4249_RS04130 0.44 -0.6
859,292 + A4249_RS04130 0.49 -0.2
859,293 - A4249_RS04130 0.49 +0.4
859,578 + A4249_RS04130 0.77 +0.5
859,578 + A4249_RS04130 0.77 -1.6
859,715 + -0.1
859,715 + +0.3
859,715 + -0.1
859,716 - +0.4
859,819 + -0.2
859,820 - -0.2
859,820 - +0.0
859,872 + +0.1
859,890 - +0.6
860,232 + A4249_RS04135 0.17 +0.4
860,232 + A4249_RS04135 0.17 -0.3
860,232 + A4249_RS04135 0.17 -0.4
860,232 + A4249_RS04135 0.17 +1.3
860,232 + A4249_RS04135 0.17 +0.0
860,232 + A4249_RS04135 0.17 -0.4
860,233 - A4249_RS04135 0.17 -0.4
860,233 - A4249_RS04135 0.17 -2.2
860,233 - A4249_RS04135 0.17 -1.1
860,233 - A4249_RS04135 0.17 +0.9
860,233 - A4249_RS04135 0.17 +0.1
860,233 - A4249_RS04135 0.17 -0.7
860,233 - A4249_RS04135 0.17 +0.8
860,246 + A4249_RS04135 0.17 -0.6
860,246 + A4249_RS04135 0.17 +1.1
860,246 + A4249_RS04135 0.17 +0.3
860,247 - A4249_RS04135 0.17 +0.2
860,247 - A4249_RS04135 0.17 +0.7
860,473 + A4249_RS04135 0.30 +0.4
860,473 + A4249_RS04135 0.30 -0.2
860,473 + A4249_RS04135 0.30 -0.4
860,474 - A4249_RS04135 0.30 -1.0
860,474 - A4249_RS04135 0.30 +0.1
860,474 - A4249_RS04135 0.30 -0.4
860,474 - A4249_RS04135 0.30 +0.4
860,518 + A4249_RS04135 0.32 -0.7
860,518 + A4249_RS04135 0.32 +0.6
860,518 + A4249_RS04135 0.32 +0.3
860,518 + A4249_RS04135 0.32 +0.3
860,518 + A4249_RS04135 0.32 -2.2
860,519 - A4249_RS04135 0.32 +0.3
860,519 - A4249_RS04135 0.32 -0.4
860,519 - A4249_RS04135 0.32 -0.7
860,519 - A4249_RS04135 0.32 -0.5
860,519 - A4249_RS04135 0.32 -0.6
860,626 + A4249_RS04135 0.38 +1.3
860,626 + A4249_RS04135 0.38 -0.0
860,626 + A4249_RS04135 0.38 +0.8
860,626 + A4249_RS04135 0.38 -0.9
860,626 + A4249_RS04135 0.38 -0.1
860,626 + A4249_RS04135 0.38 -0.3
860,627 - A4249_RS04135 0.38 +0.0
860,627 - A4249_RS04135 0.38 -0.2
860,627 - A4249_RS04135 0.38 -0.5
860,674 + A4249_RS04135 0.41 +0.4
860,674 + A4249_RS04135 0.41 -0.3
860,674 + A4249_RS04135 0.41 -0.4
860,674 + A4249_RS04135 0.41 +0.9
860,674 + A4249_RS04135 0.41 +0.3
860,674 + A4249_RS04135 0.41 +0.5
860,675 - A4249_RS04135 0.41 +0.3
860,675 - A4249_RS04135 0.41 -0.2
860,695 + A4249_RS04135 0.42 +0.5
860,696 - A4249_RS04135 0.42 -0.4
860,863 + A4249_RS04135 0.51 -0.2
860,867 + A4249_RS04135 0.51 -1.2
860,867 + A4249_RS04135 0.51 -0.9
860,867 + A4249_RS04135 0.51 +0.3
860,867 + A4249_RS04135 0.51 -0.5
860,867 + A4249_RS04135 0.51 -0.4
860,867 + A4249_RS04135 0.51 -0.5
860,868 - A4249_RS04135 0.51 +1.0
860,868 - A4249_RS04135 0.51 +0.2
860,868 - A4249_RS04135 0.51 -0.4
860,868 - A4249_RS04135 0.51 -0.4
860,869 + A4249_RS04135 0.51 -0.3
860,869 + A4249_RS04135 0.51 -0.3
860,869 + A4249_RS04135 0.51 +0.1
860,869 + A4249_RS04135 0.51 +0.1
860,869 + A4249_RS04135 0.51 +0.2
860,870 - A4249_RS04135 0.51 +0.8
860,870 - A4249_RS04135 0.51 -0.0
860,870 - A4249_RS04135 0.51 -0.5
860,870 - A4249_RS04135 0.51 +0.4
861,077 + A4249_RS04135 0.62 -1.0
861,078 - A4249_RS04135 0.62 -0.0
861,078 - A4249_RS04135 0.62 +0.5
861,094 + A4249_RS04135 0.63 +0.3
861,094 + A4249_RS04135 0.63 +0.1
861,715 + +0.1
861,715 + +0.9
861,715 + +0.7
861,715 + +0.6
861,716 - +1.2
861,716 - +0.2
861,798 + -0.4
861,798 + +0.3
861,799 - +0.0
861,799 - +0.0
861,799 - -0.5
861,799 - +0.2
861,948 + A4249_RS04140 0.39 -1.0
861,948 + A4249_RS04140 0.39 -0.2
861,948 + A4249_RS04140 0.39 -1.5
861,948 + A4249_RS04140 0.39 +0.2
861,948 + A4249_RS04140 0.39 -0.4
861,949 - A4249_RS04140 0.40 -1.1
861,949 - A4249_RS04140 0.40 -0.5
861,949 - A4249_RS04140 0.40 +0.6
862,024 + A4249_RS04140 0.55 -0.0
862,025 - A4249_RS04140 0.55 +0.4
862,089 - A4249_RS04140 0.69 -0.9
862,089 - A4249_RS04140 0.69 -0.0
862,238 + +0.7
862,238 + -1.1
862,238 + -1.1
862,239 - -0.9
862,302 + A4249_RS04145 0.12 +0.3
862,302 + A4249_RS04145 0.12 +0.3
862,302 + A4249_RS04145 0.12 -1.3
862,302 + A4249_RS04145 0.12 -0.5
862,303 - A4249_RS04145 0.12 +0.4
862,338 + A4249_RS04145 0.19 -0.1
862,338 + A4249_RS04145 0.19 -0.4
862,339 - A4249_RS04145 0.19 +0.1
862,339 - A4249_RS04145 0.19 +0.2
862,339 - A4249_RS04145 0.19 +0.5
862,633 + A4249_RS04145 0.72 +0.2
862,633 + A4249_RS04145 0.72 +1.1
862,650 + A4249_RS04145 0.75 +1.1
862,650 + A4249_RS04145 0.75 +0.2
862,650 + A4249_RS04145 0.75 -1.2
862,650 + A4249_RS04145 0.75 -1.0
862,650 + A4249_RS04145 0.75 +1.2
862,650 + A4249_RS04145 0.75 -3.0
862,650 + A4249_RS04145 0.75 +0.3
862,650 + A4249_RS04145 0.75 +0.8
862,650 + A4249_RS04145 0.75 +0.1
862,650 + A4249_RS04145 0.75 +0.0
862,651 - A4249_RS04145 0.75 -0.2
862,651 - A4249_RS04145 0.75 +1.2
862,651 - A4249_RS04145 0.75 -1.2
862,651 - A4249_RS04145 0.75 -0.9
862,651 - A4249_RS04145 0.75 -0.3
862,651 - A4249_RS04145 0.75 +0.6

Or see this region's nucleotide sequence