Strain Fitness in Escherichia coli ECRC101 around MCAODC_27265

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsunT and MCAODC_27265 are separated by 3 nucleotidesMCAODC_27265 and MCAODC_27270 overlap by 4 nucleotides MCAODC_27260: sunT - type I secretion system permease/ATPase, at 2,176,814 to 2,178,976 sunT MCAODC_27265: MCAODC_27265 - RTX family exoprotein, at 2,178,980 to 2,181,400 _27265 MCAODC_27270: MCAODC_27270 - Ig-like domain-containing protein, at 2,181,397 to 2,194,536 _27270 Position (kb) 2178 2179 2180 2181 2182Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2178.113 kb on - strand, within sunTat 2178.113 kb on - strand, within sunTat 2178.169 kb on + strand, within sunTat 2178.169 kb on + strand, within sunTat 2178.170 kb on - strand, within sunTat 2178.170 kb on - strand, within sunTat 2178.170 kb on - strand, within sunTat 2178.172 kb on + strand, within sunTat 2178.172 kb on + strand, within sunTat 2178.173 kb on - strand, within sunTat 2178.211 kb on + strand, within sunTat 2178.284 kb on - strand, within sunTat 2178.317 kb on + strand, within sunTat 2178.318 kb on - strand, within sunTat 2178.390 kb on - strand, within sunTat 2178.490 kb on + strand, within sunTat 2178.491 kb on - strand, within sunTat 2178.491 kb on - strand, within sunTat 2178.491 kb on - strand, within sunTat 2178.518 kb on + strand, within sunTat 2178.561 kb on + strand, within sunTat 2178.561 kb on + strand, within sunTat 2178.561 kb on + strand, within sunTat 2178.562 kb on - strand, within sunTat 2178.646 kb on + strand, within sunTat 2178.652 kb on + strand, within sunTat 2178.653 kb on - strand, within sunTat 2178.691 kb on + strand, within sunTat 2178.737 kb on - strand, within sunTat 2178.815 kb on + strandat 2178.815 kb on + strandat 2178.854 kb on - strandat 2178.912 kb on + strandat 2178.916 kb on - strandat 2178.978 kb on - strandat 2178.981 kb on + strandat 2178.981 kb on + strandat 2178.982 kb on - strandat 2178.982 kb on - strandat 2179.054 kb on + strandat 2179.055 kb on - strandat 2179.055 kb on - strandat 2179.055 kb on - strandat 2179.055 kb on - strandat 2179.055 kb on - strandat 2179.185 kb on + strandat 2179.186 kb on - strandat 2179.186 kb on - strandat 2179.224 kb on - strand, within MCAODC_27265at 2179.237 kb on + strand, within MCAODC_27265at 2179.277 kb on + strand, within MCAODC_27265at 2179.283 kb on - strand, within MCAODC_27265at 2179.344 kb on + strand, within MCAODC_27265at 2179.471 kb on + strand, within MCAODC_27265at 2179.492 kb on + strand, within MCAODC_27265at 2179.492 kb on + strand, within MCAODC_27265at 2179.523 kb on + strand, within MCAODC_27265at 2179.523 kb on + strand, within MCAODC_27265at 2179.524 kb on - strand, within MCAODC_27265at 2179.612 kb on - strand, within MCAODC_27265at 2179.636 kb on - strand, within MCAODC_27265at 2179.734 kb on + strand, within MCAODC_27265at 2179.839 kb on + strand, within MCAODC_27265at 2179.839 kb on + strand, within MCAODC_27265at 2179.840 kb on - strand, within MCAODC_27265at 2179.864 kb on - strand, within MCAODC_27265at 2179.953 kb on + strand, within MCAODC_27265at 2179.954 kb on - strand, within MCAODC_27265at 2179.966 kb on + strand, within MCAODC_27265at 2179.975 kb on - strand, within MCAODC_27265at 2180.197 kb on + strand, within MCAODC_27265at 2180.198 kb on - strand, within MCAODC_27265at 2180.200 kb on + strand, within MCAODC_27265at 2180.200 kb on + strand, within MCAODC_27265at 2180.201 kb on - strand, within MCAODC_27265at 2180.201 kb on - strand, within MCAODC_27265at 2180.201 kb on - strand, within MCAODC_27265at 2180.202 kb on + strand, within MCAODC_27265at 2180.203 kb on - strand, within MCAODC_27265at 2180.203 kb on - strand, within MCAODC_27265at 2180.203 kb on - strand, within MCAODC_27265at 2180.203 kb on - strand, within MCAODC_27265at 2180.208 kb on + strand, within MCAODC_27265at 2180.208 kb on + strand, within MCAODC_27265at 2180.278 kb on + strand, within MCAODC_27265at 2180.279 kb on - strand, within MCAODC_27265at 2180.279 kb on - strand, within MCAODC_27265at 2180.292 kb on + strand, within MCAODC_27265at 2180.292 kb on + strand, within MCAODC_27265at 2180.292 kb on + strand, within MCAODC_27265at 2180.292 kb on + strand, within MCAODC_27265at 2180.292 kb on + strand, within MCAODC_27265at 2180.364 kb on + strand, within MCAODC_27265at 2180.365 kb on - strand, within MCAODC_27265at 2180.369 kb on - strand, within MCAODC_27265at 2180.369 kb on - strand, within MCAODC_27265at 2180.456 kb on - strand, within MCAODC_27265at 2180.485 kb on + strand, within MCAODC_27265at 2180.486 kb on - strand, within MCAODC_27265at 2180.554 kb on - strand, within MCAODC_27265at 2180.554 kb on - strand, within MCAODC_27265at 2180.554 kb on - strand, within MCAODC_27265at 2180.554 kb on - strand, within MCAODC_27265at 2180.554 kb on - strand, within MCAODC_27265at 2180.567 kb on - strand, within MCAODC_27265at 2180.568 kb on + strand, within MCAODC_27265at 2180.568 kb on + strand, within MCAODC_27265at 2180.568 kb on + strand, within MCAODC_27265at 2180.568 kb on + strand, within MCAODC_27265at 2180.568 kb on + strand, within MCAODC_27265at 2180.568 kb on + strand, within MCAODC_27265at 2180.568 kb on + strand, within MCAODC_27265at 2180.568 kb on + strand, within MCAODC_27265at 2180.569 kb on - strand, within MCAODC_27265at 2180.569 kb on - strand, within MCAODC_27265at 2180.569 kb on - strand, within MCAODC_27265at 2180.640 kb on + strand, within MCAODC_27265at 2180.640 kb on + strand, within MCAODC_27265at 2180.703 kb on - strand, within MCAODC_27265at 2180.848 kb on + strand, within MCAODC_27265at 2180.882 kb on - strand, within MCAODC_27265at 2180.894 kb on - strand, within MCAODC_27265at 2180.894 kb on - strand, within MCAODC_27265at 2180.895 kb on + strand, within MCAODC_27265at 2180.895 kb on + strand, within MCAODC_27265at 2180.896 kb on - strand, within MCAODC_27265at 2180.896 kb on - strand, within MCAODC_27265at 2180.923 kb on + strand, within MCAODC_27265at 2180.952 kb on + strand, within MCAODC_27265at 2180.976 kb on + strand, within MCAODC_27265at 2180.976 kb on + strand, within MCAODC_27265at 2180.977 kb on - strand, within MCAODC_27265at 2180.994 kb on + strand, within MCAODC_27265at 2181.045 kb on - strand, within MCAODC_27265at 2181.094 kb on - strand, within MCAODC_27265at 2181.127 kb on + strand, within MCAODC_27265at 2181.145 kb on - strand, within MCAODC_27265at 2181.181 kb on + strandat 2181.184 kb on + strandat 2181.193 kb on + strandat 2181.218 kb on + strandat 2181.219 kb on - strandat 2181.237 kb on + strandat 2181.237 kb on + strandat 2181.238 kb on - strandat 2181.238 kb on - strandat 2181.281 kb on + strandat 2181.281 kb on + strandat 2181.281 kb on + strandat 2181.281 kb on + strandat 2181.282 kb on - strandat 2181.282 kb on - strandat 2181.282 kb on - strandat 2181.282 kb on - strandat 2181.282 kb on - strandat 2181.282 kb on - strandat 2181.282 kb on - strandat 2181.285 kb on + strandat 2181.285 kb on + strandat 2181.285 kb on + strandat 2181.285 kb on + strandat 2181.285 kb on + strandat 2181.285 kb on + strandat 2181.285 kb on + strandat 2181.286 kb on - strandat 2181.286 kb on - strandat 2181.286 kb on - strandat 2181.339 kb on + strandat 2181.339 kb on + strandat 2181.339 kb on + strandat 2181.339 kb on + strandat 2181.340 kb on - strandat 2181.340 kb on - strandat 2181.340 kb on - strandat 2181.369 kb on + strandat 2181.370 kb on - strandat 2181.370 kb on - strandat 2181.370 kb on - strandat 2181.406 kb on + strandat 2181.406 kb on + strandat 2181.407 kb on - strandat 2181.407 kb on - strandat 2181.408 kb on + strandat 2181.408 kb on + strandat 2181.408 kb on + strandat 2181.409 kb on - strandat 2181.409 kb on - strandat 2181.409 kb on - strandat 2181.409 kb on - strandat 2181.456 kb on + strandat 2181.457 kb on - strandat 2181.499 kb on - strandat 2181.499 kb on - strandat 2181.530 kb on + strandat 2181.530 kb on + strandat 2181.530 kb on + strandat 2181.531 kb on - strandat 2181.534 kb on + strandat 2181.534 kb on + strandat 2181.534 kb on + strandat 2181.535 kb on - strandat 2181.535 kb on - strandat 2181.535 kb on - strandat 2181.536 kb on + strandat 2181.536 kb on + strandat 2181.537 kb on - strandat 2181.567 kb on - strandat 2181.567 kb on - strandat 2181.605 kb on - strandat 2181.630 kb on - strandat 2181.664 kb on + strandat 2181.746 kb on + strandat 2181.746 kb on + strandat 2181.747 kb on - strandat 2181.747 kb on - strandat 2181.784 kb on - strandat 2181.851 kb on + strandat 2181.852 kb on - strandat 2181.857 kb on + strandat 2181.857 kb on + strandat 2181.857 kb on + strandat 2181.857 kb on + strandat 2181.858 kb on - strandat 2181.858 kb on - strandat 2181.858 kb on - strandat 2181.890 kb on + strandat 2181.890 kb on + strandat 2181.890 kb on + strandat 2181.891 kb on - strandat 2181.903 kb on + strandat 2181.903 kb on + strandat 2182.024 kb on - strandat 2182.202 kb on + strandat 2182.202 kb on + strandat 2182.202 kb on + strandat 2182.203 kb on - strandat 2182.203 kb on - strandat 2182.203 kb on - strandat 2182.338 kb on + strandat 2182.341 kb on + strandat 2182.393 kb on - strandat 2182.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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2,178,113 - sunT MCAODC_27260 0.60 -0.5
2,178,113 - sunT MCAODC_27260 0.60 -1.1
2,178,169 + sunT MCAODC_27260 0.63 -3.2
2,178,169 + sunT MCAODC_27260 0.63 -2.1
2,178,170 - sunT MCAODC_27260 0.63 +0.5
2,178,170 - sunT MCAODC_27260 0.63 +0.6
2,178,170 - sunT MCAODC_27260 0.63 +0.1
2,178,172 + sunT MCAODC_27260 0.63 +0.5
2,178,172 + sunT MCAODC_27260 0.63 -0.1
2,178,173 - sunT MCAODC_27260 0.63 -2.5
2,178,211 + sunT MCAODC_27260 0.65 -0.6
2,178,284 - sunT MCAODC_27260 0.68 -2.1
2,178,317 + sunT MCAODC_27260 0.69 +0.7
2,178,318 - sunT MCAODC_27260 0.70 -0.2
2,178,390 - sunT MCAODC_27260 0.73 +0.5
2,178,490 + sunT MCAODC_27260 0.77 -2.6
2,178,491 - sunT MCAODC_27260 0.78 +0.4
2,178,491 - sunT MCAODC_27260 0.78 +0.3
2,178,491 - sunT MCAODC_27260 0.78 -0.6
2,178,518 + sunT MCAODC_27260 0.79 -1.1
2,178,561 + sunT MCAODC_27260 0.81 +0.1
2,178,561 + sunT MCAODC_27260 0.81 +1.2
2,178,561 + sunT MCAODC_27260 0.81 +1.4
2,178,562 - sunT MCAODC_27260 0.81 -0.3
2,178,646 + sunT MCAODC_27260 0.85 +0.8
2,178,652 + sunT MCAODC_27260 0.85 -0.1
2,178,653 - sunT MCAODC_27260 0.85 +1.2
2,178,691 + sunT MCAODC_27260 0.87 +0.4
2,178,737 - sunT MCAODC_27260 0.89 -0.1
2,178,815 + +1.4
2,178,815 + -0.6
2,178,854 - -2.5
2,178,912 + +0.8
2,178,916 - -0.7
2,178,978 - +0.2
2,178,981 + +1.5
2,178,981 + +1.9
2,178,982 - -0.5
2,178,982 - -2.3
2,179,054 + +0.6
2,179,055 - -0.5
2,179,055 - +0.2
2,179,055 - +0.7
2,179,055 - -2.1
2,179,055 - -0.2
2,179,185 + -2.9
2,179,186 - -0.0
2,179,186 - +0.2
2,179,224 - MCAODC_27265 0.10 -1.4
2,179,237 + MCAODC_27265 0.11 -1.2
2,179,277 + MCAODC_27265 0.12 +0.9
2,179,283 - MCAODC_27265 0.13 +0.7
2,179,344 + MCAODC_27265 0.15 -0.5
2,179,471 + MCAODC_27265 0.20 +0.1
2,179,492 + MCAODC_27265 0.21 +0.4
2,179,492 + MCAODC_27265 0.21 +0.5
2,179,523 + MCAODC_27265 0.22 +0.4
2,179,523 + MCAODC_27265 0.22 +0.1
2,179,524 - MCAODC_27265 0.22 +0.8
2,179,612 - MCAODC_27265 0.26 +0.8
2,179,636 - MCAODC_27265 0.27 -0.2
2,179,734 + MCAODC_27265 0.31 +0.3
2,179,839 + MCAODC_27265 0.35 +0.4
2,179,839 + MCAODC_27265 0.35 +0.5
2,179,840 - MCAODC_27265 0.36 -0.3
2,179,864 - MCAODC_27265 0.37 -1.1
2,179,953 + MCAODC_27265 0.40 +0.1
2,179,954 - MCAODC_27265 0.40 +0.6
2,179,966 + MCAODC_27265 0.41 -2.1
2,179,975 - MCAODC_27265 0.41 +0.0
2,180,197 + MCAODC_27265 0.50 -1.1
2,180,198 - MCAODC_27265 0.50 -1.2
2,180,200 + MCAODC_27265 0.50 -0.3
2,180,200 + MCAODC_27265 0.50 +0.2
2,180,201 - MCAODC_27265 0.50 +0.7
2,180,201 - MCAODC_27265 0.50 +0.8
2,180,201 - MCAODC_27265 0.50 +1.8
2,180,202 + MCAODC_27265 0.50 +0.7
2,180,203 - MCAODC_27265 0.51 +0.7
2,180,203 - MCAODC_27265 0.51 -1.6
2,180,203 - MCAODC_27265 0.51 -0.5
2,180,203 - MCAODC_27265 0.51 +1.1
2,180,208 + MCAODC_27265 0.51 +0.6
2,180,208 + MCAODC_27265 0.51 -0.3
2,180,278 + MCAODC_27265 0.54 -0.1
2,180,279 - MCAODC_27265 0.54 +0.4
2,180,279 - MCAODC_27265 0.54 +0.7
2,180,292 + MCAODC_27265 0.54 -0.1
2,180,292 + MCAODC_27265 0.54 +1.0
2,180,292 + MCAODC_27265 0.54 +0.5
2,180,292 + MCAODC_27265 0.54 +0.9
2,180,292 + MCAODC_27265 0.54 +0.5
2,180,364 + MCAODC_27265 0.57 -0.7
2,180,365 - MCAODC_27265 0.57 +0.5
2,180,369 - MCAODC_27265 0.57 +0.3
2,180,369 - MCAODC_27265 0.57 +0.1
2,180,456 - MCAODC_27265 0.61 -0.2
2,180,485 + MCAODC_27265 0.62 -1.5
2,180,486 - MCAODC_27265 0.62 +1.9
2,180,554 - MCAODC_27265 0.65 +0.4
2,180,554 - MCAODC_27265 0.65 -0.9
2,180,554 - MCAODC_27265 0.65 -0.2
2,180,554 - MCAODC_27265 0.65 +0.0
2,180,554 - MCAODC_27265 0.65 -0.1
2,180,567 - MCAODC_27265 0.66 -1.6
2,180,568 + MCAODC_27265 0.66 -1.0
2,180,568 + MCAODC_27265 0.66 +0.1
2,180,568 + MCAODC_27265 0.66 -0.5
2,180,568 + MCAODC_27265 0.66 +0.6
2,180,568 + MCAODC_27265 0.66 +0.4
2,180,568 + MCAODC_27265 0.66 +1.9
2,180,568 + MCAODC_27265 0.66 -0.9
2,180,568 + MCAODC_27265 0.66 +0.2
2,180,569 - MCAODC_27265 0.66 -0.1
2,180,569 - MCAODC_27265 0.66 +0.4
2,180,569 - MCAODC_27265 0.66 +0.6
2,180,640 + MCAODC_27265 0.69 -0.2
2,180,640 + MCAODC_27265 0.69 -1.4
2,180,703 - MCAODC_27265 0.71 +1.5
2,180,848 + MCAODC_27265 0.77 +1.1
2,180,882 - MCAODC_27265 0.79 -0.4
2,180,894 - MCAODC_27265 0.79 -0.5
2,180,894 - MCAODC_27265 0.79 +1.2
2,180,895 + MCAODC_27265 0.79 -0.5
2,180,895 + MCAODC_27265 0.79 +0.3
2,180,896 - MCAODC_27265 0.79 -3.6
2,180,896 - MCAODC_27265 0.79 +0.8
2,180,923 + MCAODC_27265 0.80 -0.6
2,180,952 + MCAODC_27265 0.81 -0.3
2,180,976 + MCAODC_27265 0.82 -1.4
2,180,976 + MCAODC_27265 0.82 +0.3
2,180,977 - MCAODC_27265 0.82 -0.3
2,180,994 + MCAODC_27265 0.83 -0.2
2,181,045 - MCAODC_27265 0.85 -0.5
2,181,094 - MCAODC_27265 0.87 -0.2
2,181,127 + MCAODC_27265 0.89 -2.4
2,181,145 - MCAODC_27265 0.89 +0.4
2,181,181 + -0.8
2,181,184 + +0.6
2,181,193 + -1.1
2,181,218 + +0.9
2,181,219 - +1.7
2,181,237 + +1.5
2,181,237 + +0.2
2,181,238 - +0.3
2,181,238 - -0.6
2,181,281 + -0.0
2,181,281 + -1.3
2,181,281 + -0.4
2,181,281 + +0.2
2,181,282 - +0.1
2,181,282 - -1.0
2,181,282 - -1.1
2,181,282 - -0.2
2,181,282 - -2.3
2,181,282 - -0.1
2,181,282 - -1.1
2,181,285 + +0.5
2,181,285 + +0.4
2,181,285 + -3.4
2,181,285 + +2.5
2,181,285 + +0.1
2,181,285 + +0.6
2,181,285 + +0.9
2,181,286 - -0.9
2,181,286 - +1.0
2,181,286 - -1.7
2,181,339 + +0.4
2,181,339 + +0.7
2,181,339 + +0.2
2,181,339 + +0.8
2,181,340 - -0.4
2,181,340 - -3.2
2,181,340 - -0.2
2,181,369 + -2.1
2,181,370 - +0.4
2,181,370 - -0.4
2,181,370 - -0.9
2,181,406 + -1.4
2,181,406 + -1.2
2,181,407 - -0.7
2,181,407 - +0.6
2,181,408 + -2.1
2,181,408 + -0.2
2,181,408 + +1.2
2,181,409 - +0.1
2,181,409 - -3.1
2,181,409 - +0.9
2,181,409 - -0.9
2,181,456 + +0.3
2,181,457 - +0.2
2,181,499 - +1.0
2,181,499 - -0.0
2,181,530 + +0.9
2,181,530 + -0.9
2,181,530 + +0.5
2,181,531 - -0.2
2,181,534 + +0.8
2,181,534 + -1.9
2,181,534 + +1.0
2,181,535 - +0.6
2,181,535 - -0.4
2,181,535 - +0.6
2,181,536 + +0.9
2,181,536 + +1.0
2,181,537 - -1.0
2,181,567 - +0.1
2,181,567 - -1.1
2,181,605 - +1.3
2,181,630 - +0.5
2,181,664 + +1.3
2,181,746 + +0.9
2,181,746 + +0.7
2,181,747 - -1.9
2,181,747 - -0.5
2,181,784 - +0.3
2,181,851 + +0.4
2,181,852 - -3.1
2,181,857 + +1.5
2,181,857 + -0.6
2,181,857 + -1.5
2,181,857 + +0.7
2,181,858 - +0.0
2,181,858 - +0.4
2,181,858 - -0.3
2,181,890 + +0.1
2,181,890 + +0.5
2,181,890 + -0.3
2,181,891 - +0.6
2,181,903 + +0.7
2,181,903 + -0.4
2,182,024 - +0.4
2,182,202 + +0.6
2,182,202 + -0.3
2,182,202 + +0.6
2,182,203 - -0.2
2,182,203 - +0.2
2,182,203 - -0.1
2,182,338 + -2.5
2,182,341 + -0.1
2,182,393 - +0.7
2,182,393 - +0.8

Or see this region's nucleotide sequence