Strain Fitness in Escherichia coli ECRC101 around MCAODC_25120

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntartQ and artM overlap by 1 nucleotidesartM and MCAODC_25120 overlap by 1 nucleotidesMCAODC_25120 and artJ are separated by 153 nucleotidesartJ and aslA are separated by 50 nucleotides MCAODC_25110: artQ - arginine ABC transporter permease ArtQ, at 1,749,858 to 1,750,574 artQ MCAODC_25115: artM - arginine ABC transporter permease ArtM, at 1,750,574 to 1,751,242 artM MCAODC_25120: MCAODC_25120 - hypothetical protein, at 1,751,242 to 1,751,379 _25120 MCAODC_25130: artJ - ABC transporter substrate-binding protein ArtJ, at 1,751,533 to 1,752,264 artJ MCAODC_25135: aslA - sulfatase, at 1,752,315 to 1,753,796 aslA Position (kb) 1751 1752Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1750.299 kb on - strand, within artQat 1750.403 kb on + strand, within artQat 1750.417 kb on + strand, within artQat 1750.449 kb on - strand, within artQat 1750.463 kb on + strand, within artQat 1750.463 kb on + strand, within artQat 1750.471 kb on - strand, within artQat 1750.491 kb on + strand, within artQat 1750.583 kb on + strandat 1750.584 kb on - strandat 1750.724 kb on + strand, within artMat 1750.725 kb on - strand, within artMat 1750.726 kb on + strand, within artMat 1750.726 kb on + strand, within artMat 1750.727 kb on - strand, within artMat 1750.727 kb on - strand, within artMat 1750.775 kb on + strand, within artMat 1750.776 kb on - strand, within artMat 1750.848 kb on + strand, within artMat 1750.848 kb on + strand, within artMat 1750.848 kb on + strand, within artMat 1750.849 kb on - strand, within artMat 1750.849 kb on - strand, within artMat 1750.997 kb on + strand, within artMat 1751.056 kb on + strand, within artMat 1751.069 kb on + strand, within artMat 1751.069 kb on + strand, within artMat 1751.069 kb on + strand, within artMat 1751.070 kb on - strand, within artMat 1751.077 kb on + strand, within artMat 1751.126 kb on + strand, within artMat 1751.126 kb on + strand, within artMat 1751.126 kb on + strand, within artMat 1751.126 kb on + strand, within artMat 1751.127 kb on - strand, within artMat 1751.158 kb on + strand, within artMat 1751.159 kb on - strand, within artMat 1751.240 kb on + strandat 1751.241 kb on - strandat 1751.273 kb on + strand, within MCAODC_25120at 1751.282 kb on + strand, within MCAODC_25120at 1751.378 kb on - strandat 1751.507 kb on + strandat 1751.507 kb on + strandat 1751.718 kb on + strand, within artJat 1751.774 kb on - strand, within artJat 1751.799 kb on + strand, within artJat 1751.800 kb on - strand, within artJat 1751.826 kb on - strand, within artJat 1751.842 kb on + strand, within artJat 1751.843 kb on - strand, within artJat 1751.843 kb on - strand, within artJat 1751.885 kb on - strand, within artJat 1751.937 kb on + strand, within artJat 1751.937 kb on + strand, within artJat 1751.950 kb on + strand, within artJat 1751.951 kb on - strand, within artJat 1751.952 kb on + strand, within artJat 1751.989 kb on + strand, within artJat 1752.213 kb on + strandat 1752.214 kb on - strandat 1752.225 kb on + strandat 1752.226 kb on - strandat 1752.229 kb on + strandat 1752.229 kb on + strandat 1752.230 kb on - strandat 1752.263 kb on - strandat 1752.266 kb on + strandat 1752.360 kb on - strandat 1752.360 kb on - strandat 1752.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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1,750,299 - artQ MCAODC_25110 0.62 +0.2
1,750,403 + artQ MCAODC_25110 0.76 +1.3
1,750,417 + artQ MCAODC_25110 0.78 -0.5
1,750,449 - artQ MCAODC_25110 0.82 +0.2
1,750,463 + artQ MCAODC_25110 0.84 +1.7
1,750,463 + artQ MCAODC_25110 0.84 +1.6
1,750,471 - artQ MCAODC_25110 0.85 -2.6
1,750,491 + artQ MCAODC_25110 0.88 -3.2
1,750,583 + +0.4
1,750,584 - -1.8
1,750,724 + artM MCAODC_25115 0.22 -4.0
1,750,725 - artM MCAODC_25115 0.23 +0.1
1,750,726 + artM MCAODC_25115 0.23 -1.2
1,750,726 + artM MCAODC_25115 0.23 -3.1
1,750,727 - artM MCAODC_25115 0.23 -1.0
1,750,727 - artM MCAODC_25115 0.23 +1.0
1,750,775 + artM MCAODC_25115 0.30 +0.5
1,750,776 - artM MCAODC_25115 0.30 -2.4
1,750,848 + artM MCAODC_25115 0.41 +0.3
1,750,848 + artM MCAODC_25115 0.41 +0.6
1,750,848 + artM MCAODC_25115 0.41 -0.0
1,750,849 - artM MCAODC_25115 0.41 -2.7
1,750,849 - artM MCAODC_25115 0.41 -2.7
1,750,997 + artM MCAODC_25115 0.63 +1.2
1,751,056 + artM MCAODC_25115 0.72 -2.5
1,751,069 + artM MCAODC_25115 0.74 -1.0
1,751,069 + artM MCAODC_25115 0.74 -0.2
1,751,069 + artM MCAODC_25115 0.74 +0.2
1,751,070 - artM MCAODC_25115 0.74 -0.2
1,751,077 + artM MCAODC_25115 0.75 +1.3
1,751,126 + artM MCAODC_25115 0.83 +1.0
1,751,126 + artM MCAODC_25115 0.83 -0.4
1,751,126 + artM MCAODC_25115 0.83 -3.4
1,751,126 + artM MCAODC_25115 0.83 +0.5
1,751,127 - artM MCAODC_25115 0.83 +0.5
1,751,158 + artM MCAODC_25115 0.87 -0.9
1,751,159 - artM MCAODC_25115 0.87 -0.8
1,751,240 + -0.0
1,751,241 - +1.3
1,751,273 + MCAODC_25120 0.22 -0.4
1,751,282 + MCAODC_25120 0.29 +0.7
1,751,378 - -1.3
1,751,507 + +0.8
1,751,507 + -3.7
1,751,718 + artJ MCAODC_25130 0.25 +0.7
1,751,774 - artJ MCAODC_25130 0.33 +0.6
1,751,799 + artJ MCAODC_25130 0.36 -0.2
1,751,800 - artJ MCAODC_25130 0.36 +0.7
1,751,826 - artJ MCAODC_25130 0.40 -0.4
1,751,842 + artJ MCAODC_25130 0.42 +0.5
1,751,843 - artJ MCAODC_25130 0.42 -3.9
1,751,843 - artJ MCAODC_25130 0.42 +1.0
1,751,885 - artJ MCAODC_25130 0.48 -2.6
1,751,937 + artJ MCAODC_25130 0.55 -0.9
1,751,937 + artJ MCAODC_25130 0.55 -2.0
1,751,950 + artJ MCAODC_25130 0.57 +0.2
1,751,951 - artJ MCAODC_25130 0.57 +1.8
1,751,952 + artJ MCAODC_25130 0.57 +0.6
1,751,989 + artJ MCAODC_25130 0.62 -0.9
1,752,213 + -0.3
1,752,214 - +1.4
1,752,225 + +0.0
1,752,226 - -0.0
1,752,229 + +0.9
1,752,229 + -1.5
1,752,230 - -2.6
1,752,263 - -3.5
1,752,266 + -0.1
1,752,360 - -2.2
1,752,360 - +0.6
1,752,360 - -0.1

Or see this region's nucleotide sequence