Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt artP and artI are separated by 17 nucleotides artI and artQ are separated by 6 nucleotides artQ and artM overlap by 1 nucleotides artM and MCAODC_25120 overlap by 1 nucleotides MCAODC_25120 and artJ are separated by 153 nucleotides
MCAODC_25100: artP - arginine ABC transporter ATP-binding protein ArtP, at 1,748,374 to 1,749,102
artP
MCAODC_25105: artI - Putative ABC transporter arginine-binding protein 2, at 1,749,120 to 1,749,851
artI
MCAODC_25110: artQ - arginine ABC transporter permease ArtQ, at 1,749,858 to 1,750,574
artQ
MCAODC_25115: artM - arginine ABC transporter permease ArtM, at 1,750,574 to 1,751,242
artM
MCAODC_25120: MCAODC_25120 - hypothetical protein, at 1,751,242 to 1,751,379
_25120
MCAODC_25130: artJ - ABC transporter substrate-binding protein ArtJ, at 1,751,533 to 1,752,264
artJ
Position (kb) 1749
1750
1751 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1748.858 kb on + strand, within artP at 1748.859 kb on - strand, within artP at 1748.947 kb on - strand, within artP at 1748.988 kb on + strand, within artP at 1749.010 kb on + strand, within artP at 1749.010 kb on + strand, within artP at 1749.010 kb on + strand, within artP at 1749.010 kb on + strand, within artP at 1749.011 kb on - strand, within artP at 1749.011 kb on - strand, within artP at 1749.011 kb on - strand, within artP at 1749.011 kb on - strand, within artP at 1749.011 kb on - strand, within artP at 1749.012 kb on + strand, within artP at 1749.032 kb on + strand at 1749.082 kb on - strand at 1749.158 kb on + strand at 1749.210 kb on + strand, within artI at 1749.284 kb on + strand, within artI at 1749.285 kb on - strand, within artI at 1749.285 kb on - strand, within artI at 1749.305 kb on + strand, within artI at 1749.315 kb on - strand, within artI at 1749.429 kb on + strand, within artI at 1749.432 kb on + strand, within artI at 1749.467 kb on + strand, within artI at 1749.471 kb on + strand, within artI at 1749.471 kb on + strand, within artI at 1749.471 kb on + strand, within artI at 1749.471 kb on + strand, within artI at 1749.472 kb on - strand, within artI at 1749.548 kb on + strand, within artI at 1749.632 kb on - strand, within artI at 1749.671 kb on + strand, within artI at 1749.718 kb on - strand, within artI at 1749.816 kb on + strand at 1749.829 kb on - strand at 1749.849 kb on + strand at 1750.052 kb on + strand, within artQ at 1750.053 kb on - strand, within artQ at 1750.120 kb on + strand, within artQ at 1750.200 kb on + strand, within artQ at 1750.299 kb on - strand, within artQ at 1750.403 kb on + strand, within artQ at 1750.417 kb on + strand, within artQ at 1750.449 kb on - strand, within artQ at 1750.463 kb on + strand, within artQ at 1750.463 kb on + strand, within artQ at 1750.471 kb on - strand, within artQ at 1750.491 kb on + strand, within artQ at 1750.583 kb on + strand at 1750.584 kb on - strand at 1750.724 kb on + strand, within artM at 1750.725 kb on - strand, within artM at 1750.726 kb on + strand, within artM at 1750.726 kb on + strand, within artM at 1750.727 kb on - strand, within artM at 1750.727 kb on - strand, within artM at 1750.775 kb on + strand, within artM at 1750.776 kb on - strand, within artM at 1750.848 kb on + strand, within artM at 1750.848 kb on + strand, within artM at 1750.848 kb on + strand, within artM at 1750.849 kb on - strand, within artM at 1750.849 kb on - strand, within artM at 1750.997 kb on + strand, within artM at 1751.056 kb on + strand, within artM at 1751.069 kb on + strand, within artM at 1751.069 kb on + strand, within artM at 1751.069 kb on + strand, within artM at 1751.070 kb on - strand, within artM at 1751.077 kb on + strand, within artM at 1751.126 kb on + strand, within artM at 1751.126 kb on + strand, within artM at 1751.126 kb on + strand, within artM at 1751.126 kb on + strand, within artM at 1751.127 kb on - strand, within artM at 1751.158 kb on + strand, within artM at 1751.159 kb on - strand, within artM at 1751.240 kb on + strand at 1751.241 kb on - strand at 1751.273 kb on + strand, within MCAODC_25120 at 1751.282 kb on + strand, within MCAODC_25120 at 1751.378 kb on - strand at 1751.507 kb on + strand at 1751.507 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,748,858 + artP MCAODC_25100 0.66 -0.8 1,748,859 - artP MCAODC_25100 0.67 +0.4 1,748,947 - artP MCAODC_25100 0.79 -0.5 1,748,988 + artP MCAODC_25100 0.84 +0.6 1,749,010 + artP MCAODC_25100 0.87 -0.5 1,749,010 + artP MCAODC_25100 0.87 +0.2 1,749,010 + artP MCAODC_25100 0.87 -0.0 1,749,010 + artP MCAODC_25100 0.87 +0.4 1,749,011 - artP MCAODC_25100 0.87 +0.6 1,749,011 - artP MCAODC_25100 0.87 +0.6 1,749,011 - artP MCAODC_25100 0.87 -2.2 1,749,011 - artP MCAODC_25100 0.87 -1.2 1,749,011 - artP MCAODC_25100 0.87 -1.5 1,749,012 + artP MCAODC_25100 0.88 +2.2 1,749,032 + +0.8 1,749,082 - -0.6 1,749,158 + +0.1 1,749,210 + artI MCAODC_25105 0.12 -3.1 1,749,284 + artI MCAODC_25105 0.22 -2.5 1,749,285 - artI MCAODC_25105 0.23 -0.1 1,749,285 - artI MCAODC_25105 0.23 +1.0 1,749,305 + artI MCAODC_25105 0.25 +0.5 1,749,315 - artI MCAODC_25105 0.27 -1.5 1,749,429 + artI MCAODC_25105 0.42 +0.8 1,749,432 + artI MCAODC_25105 0.43 -1.2 1,749,467 + artI MCAODC_25105 0.47 +0.6 1,749,471 + artI MCAODC_25105 0.48 +0.4 1,749,471 + artI MCAODC_25105 0.48 -1.1 1,749,471 + artI MCAODC_25105 0.48 +0.3 1,749,471 + artI MCAODC_25105 0.48 +0.8 1,749,472 - artI MCAODC_25105 0.48 -1.9 1,749,548 + artI MCAODC_25105 0.58 +0.5 1,749,632 - artI MCAODC_25105 0.70 -0.4 1,749,671 + artI MCAODC_25105 0.75 +0.2 1,749,718 - artI MCAODC_25105 0.82 -2.4 1,749,816 + -3.2 1,749,829 - -1.5 1,749,849 + +0.5 1,750,052 + artQ MCAODC_25110 0.27 -3.0 1,750,053 - artQ MCAODC_25110 0.27 +0.1 1,750,120 + artQ MCAODC_25110 0.37 -0.1 1,750,200 + artQ MCAODC_25110 0.48 +0.9 1,750,299 - artQ MCAODC_25110 0.62 +0.2 1,750,403 + artQ MCAODC_25110 0.76 +1.3 1,750,417 + artQ MCAODC_25110 0.78 -0.5 1,750,449 - artQ MCAODC_25110 0.82 +0.2 1,750,463 + artQ MCAODC_25110 0.84 +1.7 1,750,463 + artQ MCAODC_25110 0.84 +1.6 1,750,471 - artQ MCAODC_25110 0.85 -2.6 1,750,491 + artQ MCAODC_25110 0.88 -3.2 1,750,583 + +0.4 1,750,584 - -1.8 1,750,724 + artM MCAODC_25115 0.22 -4.0 1,750,725 - artM MCAODC_25115 0.23 +0.1 1,750,726 + artM MCAODC_25115 0.23 -1.2 1,750,726 + artM MCAODC_25115 0.23 -3.1 1,750,727 - artM MCAODC_25115 0.23 -1.0 1,750,727 - artM MCAODC_25115 0.23 +1.0 1,750,775 + artM MCAODC_25115 0.30 +0.5 1,750,776 - artM MCAODC_25115 0.30 -2.4 1,750,848 + artM MCAODC_25115 0.41 +0.3 1,750,848 + artM MCAODC_25115 0.41 +0.6 1,750,848 + artM MCAODC_25115 0.41 -0.0 1,750,849 - artM MCAODC_25115 0.41 -2.7 1,750,849 - artM MCAODC_25115 0.41 -2.7 1,750,997 + artM MCAODC_25115 0.63 +1.2 1,751,056 + artM MCAODC_25115 0.72 -2.5 1,751,069 + artM MCAODC_25115 0.74 -1.0 1,751,069 + artM MCAODC_25115 0.74 -0.2 1,751,069 + artM MCAODC_25115 0.74 +0.2 1,751,070 - artM MCAODC_25115 0.74 -0.2 1,751,077 + artM MCAODC_25115 0.75 +1.3 1,751,126 + artM MCAODC_25115 0.83 +1.0 1,751,126 + artM MCAODC_25115 0.83 -0.4 1,751,126 + artM MCAODC_25115 0.83 -3.4 1,751,126 + artM MCAODC_25115 0.83 +0.5 1,751,127 - artM MCAODC_25115 0.83 +0.5 1,751,158 + artM MCAODC_25115 0.87 -0.9 1,751,159 - artM MCAODC_25115 0.87 -0.8 1,751,240 + -0.0 1,751,241 - +1.3 1,751,273 + MCAODC_25120 0.22 -0.4 1,751,282 + MCAODC_25120 0.29 +0.7 1,751,378 - -1.3 1,751,507 + +0.8 1,751,507 + -3.7
Or see this region's nucleotide sequence