Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_23555 and tnpB are separated by 30 nucleotides tnpB and MCAODC_23565 overlap by 4 nucleotides MCAODC_23565 and MCAODC_23570 are separated by 319 nucleotides
MCAODC_23555: MCAODC_23555 - IS66-like element IS682 family transposase, at 1,436,881 to 1,438,494
_23555
MCAODC_23560: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,438,525 to 1,438,875
tnpB
MCAODC_23565: MCAODC_23565 - putative transposase of insertion sequence IS682, at 1,438,872 to 1,439,297
_23565
MCAODC_23570: MCAODC_23570 - IS66 family transposase, at 1,439,617 to 1,440,102
_23570
Position (kb)
1438
1439 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1437.626 kb on + strand, within MCAODC_23555 at 1437.626 kb on + strand, within MCAODC_23555 at 1437.627 kb on - strand, within MCAODC_23555 at 1437.627 kb on - strand, within MCAODC_23555 at 1437.754 kb on + strand, within MCAODC_23555 at 1437.840 kb on - strand, within MCAODC_23555 at 1437.913 kb on + strand, within MCAODC_23555 at 1437.944 kb on - strand, within MCAODC_23555 at 1437.944 kb on - strand, within MCAODC_23555 at 1437.944 kb on - strand, within MCAODC_23555 at 1437.946 kb on - strand, within MCAODC_23555 at 1437.946 kb on - strand, within MCAODC_23555 at 1438.103 kb on - strand, within MCAODC_23555 at 1438.713 kb on + strand, within tnpB at 1438.743 kb on + strand, within tnpB at 1439.031 kb on - strand, within MCAODC_23565 at 1439.055 kb on + strand, within MCAODC_23565 at 1439.071 kb on - strand, within MCAODC_23565 at 1439.280 kb on + strand at 1439.311 kb on + strand at 1439.312 kb on - strand at 1439.331 kb on + strand at 1439.331 kb on + strand at 1439.332 kb on - strand at 1439.332 kb on - strand at 1439.343 kb on - strand at 1439.351 kb on - strand at 1439.361 kb on + strand at 1439.361 kb on + strand at 1439.362 kb on - strand at 1439.498 kb on - strand at 1439.507 kb on - strand at 1439.535 kb on + strand at 1439.538 kb on + strand at 1439.538 kb on + strand at 1439.587 kb on + strand at 1439.587 kb on + strand at 1439.707 kb on + strand, within MCAODC_23570 at 1439.800 kb on + strand, within MCAODC_23570 at 1439.800 kb on + strand, within MCAODC_23570 at 1439.800 kb on + strand, within MCAODC_23570 at 1439.868 kb on + strand, within MCAODC_23570 at 1439.868 kb on + strand, within MCAODC_23570 at 1439.868 kb on + strand, within MCAODC_23570 at 1439.869 kb on - strand, within MCAODC_23570
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,437,626 + MCAODC_23555 0.46 -1.1 1,437,626 + MCAODC_23555 0.46 -1.7 1,437,627 - MCAODC_23555 0.46 -0.0 1,437,627 - MCAODC_23555 0.46 -3.5 1,437,754 + MCAODC_23555 0.54 -3.2 1,437,840 - MCAODC_23555 0.59 +0.4 1,437,913 + MCAODC_23555 0.64 +0.9 1,437,944 - MCAODC_23555 0.66 +0.2 1,437,944 - MCAODC_23555 0.66 +0.9 1,437,944 - MCAODC_23555 0.66 +0.1 1,437,946 - MCAODC_23555 0.66 +0.4 1,437,946 - MCAODC_23555 0.66 -1.7 1,438,103 - MCAODC_23555 0.76 +0.4 1,438,713 + tnpB MCAODC_23560 0.54 +1.0 1,438,743 + tnpB MCAODC_23560 0.62 -0.9 1,439,031 - MCAODC_23565 0.37 -0.1 1,439,055 + MCAODC_23565 0.43 +0.5 1,439,071 - MCAODC_23565 0.47 +2.3 1,439,280 + -0.3 1,439,311 + -2.3 1,439,312 - -0.0 1,439,331 + -0.0 1,439,331 + -2.6 1,439,332 - -0.5 1,439,332 - +0.9 1,439,343 - -0.6 1,439,351 - +0.8 1,439,361 + +0.6 1,439,361 + +0.1 1,439,362 - -0.5 1,439,498 - +1.4 1,439,507 - +1.1 1,439,535 + +1.0 1,439,538 + +0.8 1,439,538 + +1.0 1,439,587 + +0.7 1,439,587 + -1.1 1,439,707 + MCAODC_23570 0.19 -0.4 1,439,800 + MCAODC_23570 0.38 +0.2 1,439,800 + MCAODC_23570 0.38 +0.3 1,439,800 + MCAODC_23570 0.38 -0.5 1,439,868 + MCAODC_23570 0.52 +2.3 1,439,868 + MCAODC_23570 0.52 -2.9 1,439,868 + MCAODC_23570 0.52 +0.3 1,439,869 - MCAODC_23570 0.52 -0.5
Or see this region's nucleotide sequence