Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt narH and narG overlap by 4 nucleotides narG and narK are separated by 392 nucleotides
MCAODC_21715: narH - nitrate reductase subunit beta, at 1,125,489 to 1,127,027
narH
MCAODC_21720: narG - nitrate reductase subunit alpha, at 1,127,024 to 1,130,767
narG
MCAODC_21725: narK - nitrate transporter NarK, at 1,131,160 to 1,132,551
narK
Position (kb)
1127
1128
1129
1130
1131 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1126.331 kb on - strand, within narH at 1126.365 kb on - strand, within narH at 1126.365 kb on - strand, within narH at 1126.365 kb on - strand, within narH at 1126.365 kb on - strand, within narH at 1126.383 kb on - strand, within narH at 1126.424 kb on - strand, within narH at 1126.492 kb on + strand, within narH at 1126.492 kb on + strand, within narH at 1126.493 kb on - strand, within narH at 1126.523 kb on - strand, within narH at 1126.523 kb on - strand, within narH at 1126.986 kb on - strand at 1127.031 kb on - strand at 1127.043 kb on - strand at 1127.096 kb on + strand at 1127.097 kb on - strand at 1127.097 kb on - strand at 1127.116 kb on + strand at 1127.123 kb on + strand at 1127.124 kb on - strand at 1127.134 kb on - strand at 1127.134 kb on - strand at 1127.141 kb on - strand at 1127.213 kb on - strand at 1127.264 kb on - strand at 1127.463 kb on + strand, within narG at 1127.464 kb on - strand, within narG at 1127.632 kb on - strand, within narG at 1127.656 kb on + strand, within narG at 1127.657 kb on - strand, within narG at 1127.833 kb on + strand, within narG at 1127.981 kb on - strand, within narG at 1128.109 kb on + strand, within narG at 1128.109 kb on + strand, within narG at 1128.109 kb on + strand, within narG at 1128.371 kb on - strand, within narG at 1128.371 kb on - strand, within narG at 1128.545 kb on - strand, within narG at 1128.554 kb on - strand, within narG at 1128.577 kb on - strand, within narG at 1128.586 kb on + strand, within narG at 1128.587 kb on - strand, within narG at 1128.622 kb on + strand, within narG at 1128.720 kb on + strand, within narG at 1128.720 kb on + strand, within narG at 1128.720 kb on + strand, within narG at 1128.720 kb on + strand, within narG at 1128.721 kb on - strand, within narG at 1128.853 kb on - strand, within narG at 1128.931 kb on - strand, within narG at 1128.937 kb on - strand, within narG at 1129.032 kb on - strand, within narG at 1129.032 kb on - strand, within narG at 1129.032 kb on - strand, within narG at 1129.035 kb on + strand, within narG at 1129.105 kb on - strand, within narG at 1129.105 kb on - strand, within narG at 1129.123 kb on - strand, within narG at 1129.123 kb on - strand, within narG at 1129.259 kb on - strand, within narG at 1129.259 kb on - strand, within narG at 1129.259 kb on - strand, within narG at 1129.261 kb on - strand, within narG at 1129.261 kb on - strand, within narG at 1129.279 kb on - strand, within narG at 1129.597 kb on + strand, within narG at 1129.598 kb on - strand, within narG at 1129.631 kb on - strand, within narG at 1129.705 kb on + strand, within narG at 1129.705 kb on + strand, within narG at 1129.706 kb on - strand, within narG at 1129.719 kb on + strand, within narG at 1129.720 kb on - strand, within narG at 1129.720 kb on - strand, within narG at 1129.792 kb on - strand, within narG at 1129.792 kb on - strand, within narG at 1129.830 kb on - strand, within narG at 1130.022 kb on + strand, within narG at 1130.022 kb on + strand, within narG at 1130.023 kb on - strand, within narG at 1130.023 kb on - strand, within narG at 1130.116 kb on - strand, within narG at 1130.124 kb on - strand, within narG at 1130.170 kb on - strand, within narG at 1130.241 kb on + strand, within narG at 1130.241 kb on + strand, within narG at 1130.248 kb on + strand, within narG at 1130.248 kb on + strand, within narG at 1130.249 kb on - strand, within narG at 1130.458 kb on - strand at 1130.458 kb on - strand at 1130.464 kb on - strand at 1130.472 kb on + strand at 1130.804 kb on - strand at 1130.927 kb on + strand at 1131.043 kb on - strand at 1131.078 kb on - strand at 1131.079 kb on + strand at 1131.183 kb on - strand at 1131.183 kb on - strand at 1131.183 kb on - strand at 1131.183 kb on - strand at 1131.185 kb on - strand at 1131.185 kb on - strand at 1131.196 kb on - strand at 1131.203 kb on - strand at 1131.216 kb on - strand at 1131.230 kb on - strand at 1131.417 kb on + strand, within narK at 1131.577 kb on - strand, within narK at 1131.620 kb on - strand, within narK at 1131.620 kb on - strand, within narK at 1131.675 kb on - strand, within narK
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,126,331 - narH MCAODC_21715 0.55 -2.1 1,126,365 - narH MCAODC_21715 0.57 +2.1 1,126,365 - narH MCAODC_21715 0.57 +0.5 1,126,365 - narH MCAODC_21715 0.57 -1.9 1,126,365 - narH MCAODC_21715 0.57 +1.5 1,126,383 - narH MCAODC_21715 0.58 -3.4 1,126,424 - narH MCAODC_21715 0.61 -0.1 1,126,492 + narH MCAODC_21715 0.65 +2.0 1,126,492 + narH MCAODC_21715 0.65 +0.5 1,126,493 - narH MCAODC_21715 0.65 +0.5 1,126,523 - narH MCAODC_21715 0.67 +0.1 1,126,523 - narH MCAODC_21715 0.67 +0.3 1,126,986 - +0.7 1,127,031 - -0.8 1,127,043 - +0.3 1,127,096 + -1.1 1,127,097 - -0.9 1,127,097 - +0.1 1,127,116 + +0.3 1,127,123 + -1.6 1,127,124 - -0.6 1,127,134 - +0.7 1,127,134 - -0.3 1,127,141 - +1.3 1,127,213 - +0.0 1,127,264 - +2.3 1,127,463 + narG MCAODC_21720 0.12 -0.8 1,127,464 - narG MCAODC_21720 0.12 -0.9 1,127,632 - narG MCAODC_21720 0.16 -0.5 1,127,656 + narG MCAODC_21720 0.17 -1.1 1,127,657 - narG MCAODC_21720 0.17 -1.4 1,127,833 + narG MCAODC_21720 0.22 -2.3 1,127,981 - narG MCAODC_21720 0.26 -2.0 1,128,109 + narG MCAODC_21720 0.29 -0.3 1,128,109 + narG MCAODC_21720 0.29 -2.8 1,128,109 + narG MCAODC_21720 0.29 +0.1 1,128,371 - narG MCAODC_21720 0.36 -0.2 1,128,371 - narG MCAODC_21720 0.36 -0.9 1,128,545 - narG MCAODC_21720 0.41 +1.1 1,128,554 - narG MCAODC_21720 0.41 -0.3 1,128,577 - narG MCAODC_21720 0.41 +0.6 1,128,586 + narG MCAODC_21720 0.42 -1.1 1,128,587 - narG MCAODC_21720 0.42 +1.1 1,128,622 + narG MCAODC_21720 0.43 +0.6 1,128,720 + narG MCAODC_21720 0.45 +1.6 1,128,720 + narG MCAODC_21720 0.45 -3.4 1,128,720 + narG MCAODC_21720 0.45 +1.0 1,128,720 + narG MCAODC_21720 0.45 +0.1 1,128,721 - narG MCAODC_21720 0.45 -1.1 1,128,853 - narG MCAODC_21720 0.49 -0.3 1,128,931 - narG MCAODC_21720 0.51 -1.1 1,128,937 - narG MCAODC_21720 0.51 -0.9 1,129,032 - narG MCAODC_21720 0.54 -0.6 1,129,032 - narG MCAODC_21720 0.54 +1.2 1,129,032 - narG MCAODC_21720 0.54 +0.4 1,129,035 + narG MCAODC_21720 0.54 -0.9 1,129,105 - narG MCAODC_21720 0.56 -1.1 1,129,105 - narG MCAODC_21720 0.56 +1.2 1,129,123 - narG MCAODC_21720 0.56 +0.9 1,129,123 - narG MCAODC_21720 0.56 +0.4 1,129,259 - narG MCAODC_21720 0.60 +0.9 1,129,259 - narG MCAODC_21720 0.60 -1.0 1,129,259 - narG MCAODC_21720 0.60 +0.3 1,129,261 - narG MCAODC_21720 0.60 -0.8 1,129,261 - narG MCAODC_21720 0.60 +1.7 1,129,279 - narG MCAODC_21720 0.60 +0.7 1,129,597 + narG MCAODC_21720 0.69 -0.6 1,129,598 - narG MCAODC_21720 0.69 -2.5 1,129,631 - narG MCAODC_21720 0.70 -1.0 1,129,705 + narG MCAODC_21720 0.72 +0.9 1,129,705 + narG MCAODC_21720 0.72 -2.0 1,129,706 - narG MCAODC_21720 0.72 +0.2 1,129,719 + narG MCAODC_21720 0.72 +1.5 1,129,720 - narG MCAODC_21720 0.72 +0.2 1,129,720 - narG MCAODC_21720 0.72 -1.3 1,129,792 - narG MCAODC_21720 0.74 +0.4 1,129,792 - narG MCAODC_21720 0.74 +2.3 1,129,830 - narG MCAODC_21720 0.75 +1.0 1,130,022 + narG MCAODC_21720 0.80 -3.1 1,130,022 + narG MCAODC_21720 0.80 +0.7 1,130,023 - narG MCAODC_21720 0.80 -0.0 1,130,023 - narG MCAODC_21720 0.80 +0.8 1,130,116 - narG MCAODC_21720 0.83 +0.4 1,130,124 - narG MCAODC_21720 0.83 +0.1 1,130,170 - narG MCAODC_21720 0.84 +0.1 1,130,241 + narG MCAODC_21720 0.86 +1.1 1,130,241 + narG MCAODC_21720 0.86 -0.9 1,130,248 + narG MCAODC_21720 0.86 +2.0 1,130,248 + narG MCAODC_21720 0.86 +0.7 1,130,249 - narG MCAODC_21720 0.86 -1.9 1,130,458 - -3.0 1,130,458 - +1.0 1,130,464 - +0.8 1,130,472 + +1.4 1,130,804 - +0.9 1,130,927 + -1.7 1,131,043 - -2.8 1,131,078 - +0.4 1,131,079 + -1.6 1,131,183 - -0.4 1,131,183 - -1.1 1,131,183 - -0.6 1,131,183 - +0.8 1,131,185 - +1.1 1,131,185 - -0.4 1,131,196 - +1.9 1,131,203 - -0.9 1,131,216 - +0.9 1,131,230 - -2.0 1,131,417 + narK MCAODC_21725 0.18 +0.3 1,131,577 - narK MCAODC_21725 0.30 +0.2 1,131,620 - narK MCAODC_21725 0.33 -2.8 1,131,620 - narK MCAODC_21725 0.33 +0.5 1,131,675 - narK MCAODC_21725 0.37 +1.2
Or see this region's nucleotide sequence