Strain Fitness in Escherichia coli ECRC101 around MCAODC_21720

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnarH and narG overlap by 4 nucleotidesnarG and narK are separated by 392 nucleotides MCAODC_21715: narH - nitrate reductase subunit beta, at 1,125,489 to 1,127,027 narH MCAODC_21720: narG - nitrate reductase subunit alpha, at 1,127,024 to 1,130,767 narG MCAODC_21725: narK - nitrate transporter NarK, at 1,131,160 to 1,132,551 narK Position (kb) 1127 1128 1129 1130 1131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1126.331 kb on - strand, within narHat 1126.365 kb on - strand, within narHat 1126.365 kb on - strand, within narHat 1126.365 kb on - strand, within narHat 1126.365 kb on - strand, within narHat 1126.383 kb on - strand, within narHat 1126.424 kb on - strand, within narHat 1126.492 kb on + strand, within narHat 1126.492 kb on + strand, within narHat 1126.493 kb on - strand, within narHat 1126.523 kb on - strand, within narHat 1126.523 kb on - strand, within narHat 1126.986 kb on - strandat 1127.031 kb on - strandat 1127.043 kb on - strandat 1127.096 kb on + strandat 1127.097 kb on - strandat 1127.097 kb on - strandat 1127.116 kb on + strandat 1127.123 kb on + strandat 1127.124 kb on - strandat 1127.134 kb on - strandat 1127.134 kb on - strandat 1127.141 kb on - strandat 1127.213 kb on - strandat 1127.264 kb on - strandat 1127.463 kb on + strand, within narGat 1127.464 kb on - strand, within narGat 1127.632 kb on - strand, within narGat 1127.656 kb on + strand, within narGat 1127.657 kb on - strand, within narGat 1127.833 kb on + strand, within narGat 1127.981 kb on - strand, within narGat 1128.109 kb on + strand, within narGat 1128.109 kb on + strand, within narGat 1128.109 kb on + strand, within narGat 1128.371 kb on - strand, within narGat 1128.371 kb on - strand, within narGat 1128.545 kb on - strand, within narGat 1128.554 kb on - strand, within narGat 1128.577 kb on - strand, within narGat 1128.586 kb on + strand, within narGat 1128.587 kb on - strand, within narGat 1128.622 kb on + strand, within narGat 1128.720 kb on + strand, within narGat 1128.720 kb on + strand, within narGat 1128.720 kb on + strand, within narGat 1128.720 kb on + strand, within narGat 1128.721 kb on - strand, within narGat 1128.853 kb on - strand, within narGat 1128.931 kb on - strand, within narGat 1128.937 kb on - strand, within narGat 1129.032 kb on - strand, within narGat 1129.032 kb on - strand, within narGat 1129.032 kb on - strand, within narGat 1129.035 kb on + strand, within narGat 1129.105 kb on - strand, within narGat 1129.105 kb on - strand, within narGat 1129.123 kb on - strand, within narGat 1129.123 kb on - strand, within narGat 1129.259 kb on - strand, within narGat 1129.259 kb on - strand, within narGat 1129.259 kb on - strand, within narGat 1129.261 kb on - strand, within narGat 1129.261 kb on - strand, within narGat 1129.279 kb on - strand, within narGat 1129.597 kb on + strand, within narGat 1129.598 kb on - strand, within narGat 1129.631 kb on - strand, within narGat 1129.705 kb on + strand, within narGat 1129.705 kb on + strand, within narGat 1129.706 kb on - strand, within narGat 1129.719 kb on + strand, within narGat 1129.720 kb on - strand, within narGat 1129.720 kb on - strand, within narGat 1129.792 kb on - strand, within narGat 1129.792 kb on - strand, within narGat 1129.830 kb on - strand, within narGat 1130.022 kb on + strand, within narGat 1130.022 kb on + strand, within narGat 1130.023 kb on - strand, within narGat 1130.023 kb on - strand, within narGat 1130.116 kb on - strand, within narGat 1130.124 kb on - strand, within narGat 1130.170 kb on - strand, within narGat 1130.241 kb on + strand, within narGat 1130.241 kb on + strand, within narGat 1130.248 kb on + strand, within narGat 1130.248 kb on + strand, within narGat 1130.249 kb on - strand, within narGat 1130.458 kb on - strandat 1130.458 kb on - strandat 1130.464 kb on - strandat 1130.472 kb on + strandat 1130.804 kb on - strandat 1130.927 kb on + strandat 1131.043 kb on - strandat 1131.078 kb on - strandat 1131.079 kb on + strandat 1131.183 kb on - strandat 1131.183 kb on - strandat 1131.183 kb on - strandat 1131.183 kb on - strandat 1131.185 kb on - strandat 1131.185 kb on - strandat 1131.196 kb on - strandat 1131.203 kb on - strandat 1131.216 kb on - strandat 1131.230 kb on - strandat 1131.417 kb on + strand, within narKat 1131.577 kb on - strand, within narKat 1131.620 kb on - strand, within narKat 1131.620 kb on - strand, within narKat 1131.675 kb on - strand, within narK

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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1,126,331 - narH MCAODC_21715 0.55 -2.1
1,126,365 - narH MCAODC_21715 0.57 +2.1
1,126,365 - narH MCAODC_21715 0.57 +0.5
1,126,365 - narH MCAODC_21715 0.57 -1.9
1,126,365 - narH MCAODC_21715 0.57 +1.5
1,126,383 - narH MCAODC_21715 0.58 -3.4
1,126,424 - narH MCAODC_21715 0.61 -0.1
1,126,492 + narH MCAODC_21715 0.65 +2.0
1,126,492 + narH MCAODC_21715 0.65 +0.5
1,126,493 - narH MCAODC_21715 0.65 +0.5
1,126,523 - narH MCAODC_21715 0.67 +0.1
1,126,523 - narH MCAODC_21715 0.67 +0.3
1,126,986 - +0.7
1,127,031 - -0.8
1,127,043 - +0.3
1,127,096 + -1.1
1,127,097 - -0.9
1,127,097 - +0.1
1,127,116 + +0.3
1,127,123 + -1.6
1,127,124 - -0.6
1,127,134 - +0.7
1,127,134 - -0.3
1,127,141 - +1.3
1,127,213 - +0.0
1,127,264 - +2.3
1,127,463 + narG MCAODC_21720 0.12 -0.8
1,127,464 - narG MCAODC_21720 0.12 -0.9
1,127,632 - narG MCAODC_21720 0.16 -0.5
1,127,656 + narG MCAODC_21720 0.17 -1.1
1,127,657 - narG MCAODC_21720 0.17 -1.4
1,127,833 + narG MCAODC_21720 0.22 -2.3
1,127,981 - narG MCAODC_21720 0.26 -2.0
1,128,109 + narG MCAODC_21720 0.29 -0.3
1,128,109 + narG MCAODC_21720 0.29 -2.8
1,128,109 + narG MCAODC_21720 0.29 +0.1
1,128,371 - narG MCAODC_21720 0.36 -0.2
1,128,371 - narG MCAODC_21720 0.36 -0.9
1,128,545 - narG MCAODC_21720 0.41 +1.1
1,128,554 - narG MCAODC_21720 0.41 -0.3
1,128,577 - narG MCAODC_21720 0.41 +0.6
1,128,586 + narG MCAODC_21720 0.42 -1.1
1,128,587 - narG MCAODC_21720 0.42 +1.1
1,128,622 + narG MCAODC_21720 0.43 +0.6
1,128,720 + narG MCAODC_21720 0.45 +1.6
1,128,720 + narG MCAODC_21720 0.45 -3.4
1,128,720 + narG MCAODC_21720 0.45 +1.0
1,128,720 + narG MCAODC_21720 0.45 +0.1
1,128,721 - narG MCAODC_21720 0.45 -1.1
1,128,853 - narG MCAODC_21720 0.49 -0.3
1,128,931 - narG MCAODC_21720 0.51 -1.1
1,128,937 - narG MCAODC_21720 0.51 -0.9
1,129,032 - narG MCAODC_21720 0.54 -0.6
1,129,032 - narG MCAODC_21720 0.54 +1.2
1,129,032 - narG MCAODC_21720 0.54 +0.4
1,129,035 + narG MCAODC_21720 0.54 -0.9
1,129,105 - narG MCAODC_21720 0.56 -1.1
1,129,105 - narG MCAODC_21720 0.56 +1.2
1,129,123 - narG MCAODC_21720 0.56 +0.9
1,129,123 - narG MCAODC_21720 0.56 +0.4
1,129,259 - narG MCAODC_21720 0.60 +0.9
1,129,259 - narG MCAODC_21720 0.60 -1.0
1,129,259 - narG MCAODC_21720 0.60 +0.3
1,129,261 - narG MCAODC_21720 0.60 -0.8
1,129,261 - narG MCAODC_21720 0.60 +1.7
1,129,279 - narG MCAODC_21720 0.60 +0.7
1,129,597 + narG MCAODC_21720 0.69 -0.6
1,129,598 - narG MCAODC_21720 0.69 -2.5
1,129,631 - narG MCAODC_21720 0.70 -1.0
1,129,705 + narG MCAODC_21720 0.72 +0.9
1,129,705 + narG MCAODC_21720 0.72 -2.0
1,129,706 - narG MCAODC_21720 0.72 +0.2
1,129,719 + narG MCAODC_21720 0.72 +1.5
1,129,720 - narG MCAODC_21720 0.72 +0.2
1,129,720 - narG MCAODC_21720 0.72 -1.3
1,129,792 - narG MCAODC_21720 0.74 +0.4
1,129,792 - narG MCAODC_21720 0.74 +2.3
1,129,830 - narG MCAODC_21720 0.75 +1.0
1,130,022 + narG MCAODC_21720 0.80 -3.1
1,130,022 + narG MCAODC_21720 0.80 +0.7
1,130,023 - narG MCAODC_21720 0.80 -0.0
1,130,023 - narG MCAODC_21720 0.80 +0.8
1,130,116 - narG MCAODC_21720 0.83 +0.4
1,130,124 - narG MCAODC_21720 0.83 +0.1
1,130,170 - narG MCAODC_21720 0.84 +0.1
1,130,241 + narG MCAODC_21720 0.86 +1.1
1,130,241 + narG MCAODC_21720 0.86 -0.9
1,130,248 + narG MCAODC_21720 0.86 +2.0
1,130,248 + narG MCAODC_21720 0.86 +0.7
1,130,249 - narG MCAODC_21720 0.86 -1.9
1,130,458 - -3.0
1,130,458 - +1.0
1,130,464 - +0.8
1,130,472 + +1.4
1,130,804 - +0.9
1,130,927 + -1.7
1,131,043 - -2.8
1,131,078 - +0.4
1,131,079 + -1.6
1,131,183 - -0.4
1,131,183 - -1.1
1,131,183 - -0.6
1,131,183 - +0.8
1,131,185 - +1.1
1,131,185 - -0.4
1,131,196 - +1.9
1,131,203 - -0.9
1,131,216 - +0.9
1,131,230 - -2.0
1,131,417 + narK MCAODC_21725 0.18 +0.3
1,131,577 - narK MCAODC_21725 0.30 +0.2
1,131,620 - narK MCAODC_21725 0.33 -2.8
1,131,620 - narK MCAODC_21725 0.33 +0.5
1,131,675 - narK MCAODC_21725 0.37 +1.2

Or see this region's nucleotide sequence