Strain Fitness in Escherichia coli ECRC101 around MCAODC_20550

Experiment: Control_ECRC101_WM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntwcaM and wcaL are separated by 10 nucleotideswcaL and wcaK overlap by 4 nucleotides MCAODC_20545: wcaM - colanic acid biosynthesis protein WcaM, at 917,772 to 919,166 wcaM MCAODC_20550: wcaL - colanic acid biosynthesis glycosyltransferase WcaL, at 919,177 to 920,397 wcaL MCAODC_20555: wcaK - colanic acid biosynthesis pyruvyl transferase WcaK, at 920,394 to 921,674 wcaK Position (kb) 919 920 921Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 918.208 kb on + strand, within wcaMat 918.216 kb on + strand, within wcaMat 918.275 kb on - strand, within wcaMat 918.348 kb on - strand, within wcaMat 918.382 kb on - strand, within wcaMat 918.382 kb on - strand, within wcaMat 918.382 kb on - strand, within wcaMat 918.456 kb on - strand, within wcaMat 918.456 kb on - strand, within wcaMat 918.456 kb on - strand, within wcaMat 918.459 kb on - strand, within wcaMat 918.463 kb on + strand, within wcaMat 918.463 kb on + strand, within wcaMat 918.464 kb on - strand, within wcaMat 918.464 kb on - strand, within wcaMat 918.483 kb on + strand, within wcaMat 918.484 kb on - strand, within wcaMat 918.555 kb on - strand, within wcaMat 918.673 kb on + strand, within wcaMat 918.674 kb on - strand, within wcaMat 918.745 kb on + strand, within wcaMat 918.827 kb on + strand, within wcaMat 918.827 kb on + strand, within wcaMat 918.827 kb on + strand, within wcaMat 918.828 kb on - strand, within wcaMat 918.834 kb on - strand, within wcaMat 918.834 kb on - strand, within wcaMat 918.921 kb on + strand, within wcaMat 918.960 kb on - strand, within wcaMat 919.019 kb on + strand, within wcaMat 919.019 kb on + strand, within wcaMat 919.048 kb on + strandat 919.049 kb on - strandat 919.158 kb on - strandat 919.166 kb on + strandat 919.167 kb on - strandat 919.167 kb on - strandat 919.178 kb on + strandat 919.179 kb on - strandat 919.398 kb on + strand, within wcaLat 919.459 kb on - strand, within wcaLat 919.459 kb on - strand, within wcaLat 919.574 kb on + strand, within wcaLat 919.777 kb on - strand, within wcaLat 919.777 kb on - strand, within wcaLat 919.777 kb on - strand, within wcaLat 919.781 kb on - strand, within wcaLat 919.781 kb on - strand, within wcaLat 919.781 kb on - strand, within wcaLat 919.907 kb on + strand, within wcaLat 919.907 kb on + strand, within wcaLat 919.908 kb on - strand, within wcaLat 919.935 kb on + strand, within wcaLat 919.936 kb on - strand, within wcaLat 919.936 kb on - strand, within wcaLat 920.136 kb on + strand, within wcaLat 920.244 kb on - strand, within wcaLat 920.247 kb on + strand, within wcaLat 920.421 kb on + strandat 920.505 kb on + strandat 920.511 kb on - strandat 920.541 kb on + strand, within wcaKat 920.606 kb on + strand, within wcaKat 920.606 kb on + strand, within wcaKat 920.607 kb on - strand, within wcaKat 920.615 kb on - strand, within wcaKat 920.615 kb on - strand, within wcaKat 920.654 kb on + strand, within wcaKat 920.742 kb on + strand, within wcaKat 920.810 kb on + strand, within wcaKat 920.810 kb on + strand, within wcaKat 920.810 kb on + strand, within wcaKat 920.812 kb on + strand, within wcaKat 920.813 kb on - strand, within wcaKat 920.902 kb on + strand, within wcaKat 920.957 kb on + strand, within wcaKat 921.011 kb on - strand, within wcaKat 921.089 kb on + strand, within wcaKat 921.176 kb on + strand, within wcaKat 921.218 kb on + strand, within wcaKat 921.239 kb on + strand, within wcaKat 921.239 kb on + strand, within wcaKat 921.277 kb on + strand, within wcaKat 921.277 kb on + strand, within wcaKat 921.312 kb on - strand, within wcaK

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
remove
918,208 + wcaM MCAODC_20545 0.31 +0.0
918,216 + wcaM MCAODC_20545 0.32 -3.3
918,275 - wcaM MCAODC_20545 0.36 -1.3
918,348 - wcaM MCAODC_20545 0.41 -0.1
918,382 - wcaM MCAODC_20545 0.44 -0.4
918,382 - wcaM MCAODC_20545 0.44 +2.3
918,382 - wcaM MCAODC_20545 0.44 +0.1
918,456 - wcaM MCAODC_20545 0.49 -0.5
918,456 - wcaM MCAODC_20545 0.49 +1.6
918,456 - wcaM MCAODC_20545 0.49 -0.5
918,459 - wcaM MCAODC_20545 0.49 +0.2
918,463 + wcaM MCAODC_20545 0.50 +0.1
918,463 + wcaM MCAODC_20545 0.50 +1.1
918,464 - wcaM MCAODC_20545 0.50 +0.7
918,464 - wcaM MCAODC_20545 0.50 -0.3
918,483 + wcaM MCAODC_20545 0.51 -1.3
918,484 - wcaM MCAODC_20545 0.51 +0.0
918,555 - wcaM MCAODC_20545 0.56 -2.3
918,673 + wcaM MCAODC_20545 0.65 -2.4
918,674 - wcaM MCAODC_20545 0.65 +0.7
918,745 + wcaM MCAODC_20545 0.70 +1.3
918,827 + wcaM MCAODC_20545 0.76 -0.1
918,827 + wcaM MCAODC_20545 0.76 +0.7
918,827 + wcaM MCAODC_20545 0.76 -3.5
918,828 - wcaM MCAODC_20545 0.76 -1.0
918,834 - wcaM MCAODC_20545 0.76 -2.8
918,834 - wcaM MCAODC_20545 0.76 -0.6
918,921 + wcaM MCAODC_20545 0.82 -0.4
918,960 - wcaM MCAODC_20545 0.85 -0.2
919,019 + wcaM MCAODC_20545 0.89 -0.2
919,019 + wcaM MCAODC_20545 0.89 -2.2
919,048 + -0.1
919,049 - +2.3
919,158 - -2.6
919,166 + +0.4
919,167 - +0.2
919,167 - -0.6
919,178 + -0.8
919,179 - +0.4
919,398 + wcaL MCAODC_20550 0.18 +1.0
919,459 - wcaL MCAODC_20550 0.23 +0.9
919,459 - wcaL MCAODC_20550 0.23 -1.0
919,574 + wcaL MCAODC_20550 0.33 +0.4
919,777 - wcaL MCAODC_20550 0.49 -0.9
919,777 - wcaL MCAODC_20550 0.49 +0.3
919,777 - wcaL MCAODC_20550 0.49 -0.6
919,781 - wcaL MCAODC_20550 0.49 +0.8
919,781 - wcaL MCAODC_20550 0.49 +0.4
919,781 - wcaL MCAODC_20550 0.49 +0.7
919,907 + wcaL MCAODC_20550 0.60 -0.1
919,907 + wcaL MCAODC_20550 0.60 -0.9
919,908 - wcaL MCAODC_20550 0.60 -0.4
919,935 + wcaL MCAODC_20550 0.62 +2.7
919,936 - wcaL MCAODC_20550 0.62 +0.5
919,936 - wcaL MCAODC_20550 0.62 +0.4
920,136 + wcaL MCAODC_20550 0.79 -2.1
920,244 - wcaL MCAODC_20550 0.87 -0.9
920,247 + wcaL MCAODC_20550 0.88 -0.1
920,421 + -1.8
920,505 + +1.9
920,511 - -0.2
920,541 + wcaK MCAODC_20555 0.11 -1.4
920,606 + wcaK MCAODC_20555 0.17 -0.8
920,606 + wcaK MCAODC_20555 0.17 -0.7
920,607 - wcaK MCAODC_20555 0.17 +0.1
920,615 - wcaK MCAODC_20555 0.17 +0.3
920,615 - wcaK MCAODC_20555 0.17 -0.0
920,654 + wcaK MCAODC_20555 0.20 -0.5
920,742 + wcaK MCAODC_20555 0.27 -1.4
920,810 + wcaK MCAODC_20555 0.32 +1.3
920,810 + wcaK MCAODC_20555 0.32 -0.3
920,810 + wcaK MCAODC_20555 0.32 -2.3
920,812 + wcaK MCAODC_20555 0.33 -0.5
920,813 - wcaK MCAODC_20555 0.33 -1.6
920,902 + wcaK MCAODC_20555 0.40 -0.1
920,957 + wcaK MCAODC_20555 0.44 +0.3
921,011 - wcaK MCAODC_20555 0.48 +0.1
921,089 + wcaK MCAODC_20555 0.54 +0.9
921,176 + wcaK MCAODC_20555 0.61 -1.2
921,218 + wcaK MCAODC_20555 0.64 +0.1
921,239 + wcaK MCAODC_20555 0.66 -1.1
921,239 + wcaK MCAODC_20555 0.66 -3.6
921,277 + wcaK MCAODC_20555 0.69 +0.4
921,277 + wcaK MCAODC_20555 0.69 +0.9
921,312 - wcaK MCAODC_20555 0.72 -1.2

Or see this region's nucleotide sequence