Strain Fitness in Escherichia coli ECRC101 around MCAODC_20540

Experiment: Control_ECRC101_WM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntgalF and MCAODC_20540 are separated by 242 nucleotidesMCAODC_20540 and wcaM are separated by 157 nucleotides MCAODC_20535: galF - UTP--glucose-1-phosphate uridylyltransferase GalF, at 915,483 to 916,376 galF MCAODC_20540: MCAODC_20540 - N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase, at 916,619 to 917,614 _20540 MCAODC_20545: wcaM - colanic acid biosynthesis protein WcaM, at 917,772 to 919,166 wcaM Position (kb) 916 917 918Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 915.696 kb on - strand, within galFat 915.944 kb on - strand, within galFat 916.033 kb on - strand, within galFat 916.079 kb on + strand, within galFat 916.104 kb on - strand, within galFat 916.123 kb on - strand, within galFat 916.123 kb on - strand, within galFat 916.166 kb on - strand, within galFat 916.166 kb on - strand, within galFat 916.262 kb on - strand, within galFat 916.262 kb on - strand, within galFat 916.329 kb on - strandat 916.329 kb on - strandat 916.445 kb on - strandat 916.447 kb on - strandat 916.447 kb on - strandat 916.449 kb on - strandat 916.449 kb on - strandat 916.497 kb on - strandat 916.544 kb on - strandat 916.621 kb on - strandat 916.703 kb on - strandat 916.703 kb on - strandat 916.703 kb on - strandat 916.703 kb on - strandat 916.703 kb on - strandat 916.703 kb on - strandat 916.871 kb on - strand, within MCAODC_20540at 916.871 kb on - strand, within MCAODC_20540at 916.871 kb on - strand, within MCAODC_20540at 916.940 kb on - strand, within MCAODC_20540at 916.948 kb on - strand, within MCAODC_20540at 916.952 kb on - strand, within MCAODC_20540at 916.952 kb on - strand, within MCAODC_20540at 916.952 kb on - strand, within MCAODC_20540at 916.952 kb on - strand, within MCAODC_20540at 916.954 kb on - strand, within MCAODC_20540at 917.020 kb on - strand, within MCAODC_20540at 917.020 kb on - strand, within MCAODC_20540at 917.020 kb on - strand, within MCAODC_20540at 917.020 kb on - strand, within MCAODC_20540at 917.020 kb on - strand, within MCAODC_20540at 917.032 kb on + strand, within MCAODC_20540at 917.033 kb on - strand, within MCAODC_20540at 917.033 kb on - strand, within MCAODC_20540at 917.033 kb on - strand, within MCAODC_20540at 917.033 kb on - strand, within MCAODC_20540at 917.034 kb on + strand, within MCAODC_20540at 917.035 kb on - strand, within MCAODC_20540at 917.038 kb on + strand, within MCAODC_20540at 917.039 kb on - strand, within MCAODC_20540at 917.059 kb on + strand, within MCAODC_20540at 917.060 kb on - strand, within MCAODC_20540at 917.060 kb on - strand, within MCAODC_20540at 917.060 kb on - strand, within MCAODC_20540at 917.092 kb on + strand, within MCAODC_20540at 917.092 kb on + strand, within MCAODC_20540at 917.093 kb on - strand, within MCAODC_20540at 917.093 kb on - strand, within MCAODC_20540at 917.093 kb on - strand, within MCAODC_20540at 917.093 kb on - strand, within MCAODC_20540at 917.125 kb on + strand, within MCAODC_20540at 917.143 kb on + strand, within MCAODC_20540at 917.144 kb on - strand, within MCAODC_20540at 917.147 kb on + strand, within MCAODC_20540at 917.148 kb on - strand, within MCAODC_20540at 917.148 kb on - strand, within MCAODC_20540at 917.148 kb on - strand, within MCAODC_20540at 917.174 kb on - strand, within MCAODC_20540at 917.174 kb on - strand, within MCAODC_20540at 917.174 kb on - strand, within MCAODC_20540at 917.174 kb on - strand, within MCAODC_20540at 917.174 kb on - strand, within MCAODC_20540at 917.174 kb on - strand, within MCAODC_20540at 917.278 kb on - strand, within MCAODC_20540at 917.371 kb on - strand, within MCAODC_20540at 917.371 kb on - strand, within MCAODC_20540at 917.371 kb on - strand, within MCAODC_20540at 917.373 kb on + strand, within MCAODC_20540at 917.373 kb on + strand, within MCAODC_20540at 917.384 kb on - strand, within MCAODC_20540at 917.421 kb on - strand, within MCAODC_20540at 917.592 kb on - strandat 917.625 kb on - strandat 917.625 kb on - strandat 917.636 kb on + strandat 917.636 kb on + strandat 917.636 kb on + strandat 917.636 kb on + strandat 917.637 kb on - strandat 917.641 kb on - strandat 917.654 kb on + strandat 917.654 kb on + strandat 917.664 kb on + strandat 917.664 kb on + strandat 917.665 kb on - strandat 917.710 kb on + strandat 917.711 kb on - strandat 917.725 kb on - strandat 917.725 kb on - strandat 917.741 kb on - strandat 917.741 kb on - strandat 917.773 kb on + strandat 917.774 kb on - strandat 918.065 kb on + strand, within wcaMat 918.065 kb on + strand, within wcaMat 918.066 kb on - strand, within wcaMat 918.124 kb on + strand, within wcaMat 918.156 kb on - strand, within wcaMat 918.208 kb on + strand, within wcaMat 918.216 kb on + strand, within wcaMat 918.275 kb on - strand, within wcaMat 918.348 kb on - strand, within wcaMat 918.382 kb on - strand, within wcaMat 918.382 kb on - strand, within wcaMat 918.382 kb on - strand, within wcaMat 918.456 kb on - strand, within wcaMat 918.456 kb on - strand, within wcaMat 918.456 kb on - strand, within wcaMat 918.459 kb on - strand, within wcaMat 918.463 kb on + strand, within wcaMat 918.463 kb on + strand, within wcaMat 918.464 kb on - strand, within wcaMat 918.464 kb on - strand, within wcaMat 918.483 kb on + strand, within wcaMat 918.484 kb on - strand, within wcaMat 918.555 kb on - strand, within wcaM

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
remove
915,696 - galF MCAODC_20535 0.24 +0.0
915,944 - galF MCAODC_20535 0.52 -2.3
916,033 - galF MCAODC_20535 0.62 -1.6
916,079 + galF MCAODC_20535 0.67 -1.0
916,104 - galF MCAODC_20535 0.69 -0.4
916,123 - galF MCAODC_20535 0.72 -0.8
916,123 - galF MCAODC_20535 0.72 +0.1
916,166 - galF MCAODC_20535 0.76 -0.4
916,166 - galF MCAODC_20535 0.76 -3.6
916,262 - galF MCAODC_20535 0.87 -0.3
916,262 - galF MCAODC_20535 0.87 -0.6
916,329 - +0.0
916,329 - -1.1
916,445 - +1.3
916,447 - -1.0
916,447 - +0.4
916,449 - +1.0
916,449 - +1.0
916,497 - +0.5
916,544 - +0.8
916,621 - -1.3
916,703 - -3.9
916,703 - -1.0
916,703 - -2.5
916,703 - -1.2
916,703 - -2.7
916,703 - -4.3
916,871 - MCAODC_20540 0.25 -1.3
916,871 - MCAODC_20540 0.25 -3.7
916,871 - MCAODC_20540 0.25 +1.7
916,940 - MCAODC_20540 0.32 -3.3
916,948 - MCAODC_20540 0.33 -3.6
916,952 - MCAODC_20540 0.33 -2.0
916,952 - MCAODC_20540 0.33 -4.8
916,952 - MCAODC_20540 0.33 -4.6
916,952 - MCAODC_20540 0.33 -3.9
916,954 - MCAODC_20540 0.34 -2.3
917,020 - MCAODC_20540 0.40 -4.4
917,020 - MCAODC_20540 0.40 -3.6
917,020 - MCAODC_20540 0.40 -3.1
917,020 - MCAODC_20540 0.40 -4.2
917,020 - MCAODC_20540 0.40 -2.0
917,032 + MCAODC_20540 0.41 -1.4
917,033 - MCAODC_20540 0.42 -3.2
917,033 - MCAODC_20540 0.42 -2.3
917,033 - MCAODC_20540 0.42 -4.0
917,033 - MCAODC_20540 0.42 -4.1
917,034 + MCAODC_20540 0.42 -2.5
917,035 - MCAODC_20540 0.42 -0.6
917,038 + MCAODC_20540 0.42 -4.1
917,039 - MCAODC_20540 0.42 -3.7
917,059 + MCAODC_20540 0.44 +0.3
917,060 - MCAODC_20540 0.44 -2.5
917,060 - MCAODC_20540 0.44 -2.7
917,060 - MCAODC_20540 0.44 -2.8
917,092 + MCAODC_20540 0.47 -2.2
917,092 + MCAODC_20540 0.47 -4.9
917,093 - MCAODC_20540 0.48 -4.9
917,093 - MCAODC_20540 0.48 -5.4
917,093 - MCAODC_20540 0.48 -2.4
917,093 - MCAODC_20540 0.48 -3.8
917,125 + MCAODC_20540 0.51 -1.6
917,143 + MCAODC_20540 0.53 -2.0
917,144 - MCAODC_20540 0.53 -4.1
917,147 + MCAODC_20540 0.53 +1.1
917,148 - MCAODC_20540 0.53 -3.9
917,148 - MCAODC_20540 0.53 -1.7
917,148 - MCAODC_20540 0.53 -3.7
917,174 - MCAODC_20540 0.56 -1.6
917,174 - MCAODC_20540 0.56 -3.7
917,174 - MCAODC_20540 0.56 -6.0
917,174 - MCAODC_20540 0.56 -2.6
917,174 - MCAODC_20540 0.56 -2.4
917,174 - MCAODC_20540 0.56 -2.0
917,278 - MCAODC_20540 0.66 -2.1
917,371 - MCAODC_20540 0.76 -3.7
917,371 - MCAODC_20540 0.76 -1.7
917,371 - MCAODC_20540 0.76 -3.3
917,373 + MCAODC_20540 0.76 -1.4
917,373 + MCAODC_20540 0.76 -4.0
917,384 - MCAODC_20540 0.77 -2.6
917,421 - MCAODC_20540 0.81 -3.6
917,592 - -5.3
917,625 - -3.0
917,625 - -3.1
917,636 + +0.7
917,636 + -2.3
917,636 + -1.7
917,636 + -2.7
917,637 - +0.8
917,641 - +1.2
917,654 + -2.4
917,654 + -3.2
917,664 + -2.4
917,664 + -0.9
917,665 - -0.3
917,710 + -0.3
917,711 - -0.3
917,725 - +1.1
917,725 - -1.3
917,741 - -1.4
917,741 - -0.7
917,773 + -2.0
917,774 - +1.2
918,065 + wcaM MCAODC_20545 0.21 +1.0
918,065 + wcaM MCAODC_20545 0.21 -0.6
918,066 - wcaM MCAODC_20545 0.21 +1.9
918,124 + wcaM MCAODC_20545 0.25 -0.9
918,156 - wcaM MCAODC_20545 0.28 +0.5
918,208 + wcaM MCAODC_20545 0.31 +0.0
918,216 + wcaM MCAODC_20545 0.32 -3.3
918,275 - wcaM MCAODC_20545 0.36 -1.3
918,348 - wcaM MCAODC_20545 0.41 -0.1
918,382 - wcaM MCAODC_20545 0.44 -0.4
918,382 - wcaM MCAODC_20545 0.44 +2.3
918,382 - wcaM MCAODC_20545 0.44 +0.1
918,456 - wcaM MCAODC_20545 0.49 -0.5
918,456 - wcaM MCAODC_20545 0.49 +1.6
918,456 - wcaM MCAODC_20545 0.49 -0.5
918,459 - wcaM MCAODC_20545 0.49 +0.2
918,463 + wcaM MCAODC_20545 0.50 +0.1
918,463 + wcaM MCAODC_20545 0.50 +1.1
918,464 - wcaM MCAODC_20545 0.50 +0.7
918,464 - wcaM MCAODC_20545 0.50 -0.3
918,483 + wcaM MCAODC_20545 0.51 -1.3
918,484 - wcaM MCAODC_20545 0.51 +0.0
918,555 - wcaM MCAODC_20545 0.56 -2.3

Or see this region's nucleotide sequence