Strain Fitness in Escherichia coli ECRC101 around MCAODC_19665

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyedK and yedL are separated by 110 nucleotidesyedL and espR3 are separated by 137 nucleotidesespR3 and espR4 are separated by 818 nucleotides MCAODC_19655: yedK - Abasic site processing protein YedK, at 761,613 to 762,281 yedK MCAODC_19660: yedL - Uncharacterized N-acetyltransferase YedL, at 762,392 to 762,871 yedL MCAODC_19665: espR3 - Type III secretion system effector espR3, at 763,009 to 764,148 espR3 MCAODC_19670: espR4 - T3SS effector leucine-rich repeat protein EspR4, at 764,967 to 766,106 espR4 Position (kb) 763 764 765Strain fitness (log2 ratio) -1 0 1at 762.083 kb on - strand, within yedKat 762.087 kb on - strand, within yedKat 762.152 kb on + strand, within yedKat 762.283 kb on - strandat 762.309 kb on - strandat 762.323 kb on - strandat 762.329 kb on + strandat 762.330 kb on - strandat 762.372 kb on - strandat 762.945 kb on - strandat 763.604 kb on - strand, within espR3at 764.245 kb on + strandat 764.557 kb on - strandat 764.597 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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762,083 - yedK MCAODC_19655 0.70 -0.9
762,087 - yedK MCAODC_19655 0.71 +0.7
762,152 + yedK MCAODC_19655 0.81 +0.9
762,283 - +0.2
762,309 - -0.3
762,323 - +1.0
762,329 + -0.5
762,330 - -0.4
762,372 - -0.0
762,945 - +1.3
763,604 - espR3 MCAODC_19665 0.52 +0.7
764,245 + +0.3
764,557 - -0.5
764,597 - -0.1

Or see this region's nucleotide sequence