Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zwf and MCAODC_19075 are separated by 165 nucleotides MCAODC_19075 and hexR are separated by 22 nucleotides hexR and pyk are separated by 127 nucleotides
MCAODC_19070: zwf - glucose-6-phosphate dehydrogenase, at 665,937 to 667,412
zwf
MCAODC_19075: MCAODC_19075 - hypothetical protein, at 667,578 to 667,727
_19075
MCAODC_19080: hexR - DNA-binding transcriptional regulator HexR, at 667,750 to 668,619
hexR
MCAODC_19085: pyk - pyruvate kinase, at 668,747 to 670,189
pyk
Position (kb) 667
668
669 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 667.322 kb on - strand at 667.425 kb on - strand at 667.430 kb on - strand at 667.446 kb on - strand at 667.446 kb on - strand at 667.446 kb on - strand at 667.446 kb on - strand at 667.458 kb on - strand at 667.458 kb on - strand at 667.458 kb on - strand at 667.458 kb on - strand at 667.513 kb on - strand at 667.542 kb on - strand at 667.596 kb on + strand, within MCAODC_19075 at 667.619 kb on + strand, within MCAODC_19075 at 667.660 kb on - strand, within MCAODC_19075 at 667.677 kb on + strand, within MCAODC_19075 at 667.677 kb on + strand, within MCAODC_19075 at 667.677 kb on + strand, within MCAODC_19075 at 667.677 kb on + strand, within MCAODC_19075 at 667.677 kb on + strand, within MCAODC_19075 at 667.987 kb on + strand, within hexR at 667.988 kb on - strand, within hexR at 668.042 kb on + strand, within hexR at 668.193 kb on + strand, within hexR at 668.193 kb on + strand, within hexR at 668.193 kb on + strand, within hexR at 668.235 kb on + strand, within hexR at 668.235 kb on + strand, within hexR at 668.358 kb on + strand, within hexR at 668.359 kb on - strand, within hexR at 668.439 kb on + strand, within hexR at 668.449 kb on + strand, within hexR at 668.449 kb on + strand, within hexR at 668.449 kb on + strand, within hexR at 668.449 kb on + strand, within hexR at 668.449 kb on + strand, within hexR at 668.450 kb on - strand, within hexR at 668.451 kb on + strand, within hexR at 668.451 kb on + strand, within hexR at 668.451 kb on + strand, within hexR at 668.452 kb on - strand, within hexR at 668.489 kb on + strand, within hexR at 668.489 kb on + strand, within hexR at 668.489 kb on + strand, within hexR at 668.490 kb on - strand, within hexR at 668.541 kb on + strand at 668.541 kb on + strand at 668.541 kb on + strand at 668.598 kb on + strand at 668.638 kb on + strand at 668.644 kb on + strand at 668.646 kb on + strand at 668.665 kb on + strand at 668.742 kb on - strand at 668.744 kb on + strand at 668.744 kb on + strand at 668.745 kb on - strand at 668.745 kb on - strand at 668.745 kb on - strand at 668.745 kb on - strand at 668.813 kb on - strand at 668.850 kb on + strand at 668.850 kb on + strand at 668.855 kb on - strand at 668.980 kb on - strand, within pyk at 669.013 kb on + strand, within pyk at 669.013 kb on + strand, within pyk at 669.160 kb on - strand, within pyk at 669.229 kb on + strand, within pyk at 669.230 kb on - strand, within pyk at 669.292 kb on + strand, within pyk at 669.293 kb on - strand, within pyk at 669.315 kb on + strand, within pyk at 669.315 kb on + strand, within pyk at 669.320 kb on + strand, within pyk at 669.362 kb on + strand, within pyk at 669.362 kb on + strand, within pyk at 669.362 kb on + strand, within pyk at 669.362 kb on + strand, within pyk
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 667,322 - +1.4 667,425 - +0.4 667,430 - -3.2 667,446 - +0.1 667,446 - +0.3 667,446 - -0.1 667,446 - -2.7 667,458 - +2.0 667,458 - -1.4 667,458 - -2.1 667,458 - +1.1 667,513 - +0.7 667,542 - +1.3 667,596 + MCAODC_19075 0.12 -0.9 667,619 + MCAODC_19075 0.27 -0.1 667,660 - MCAODC_19075 0.55 +3.0 667,677 + MCAODC_19075 0.66 -0.8 667,677 + MCAODC_19075 0.66 +2.4 667,677 + MCAODC_19075 0.66 +0.8 667,677 + MCAODC_19075 0.66 +0.8 667,677 + MCAODC_19075 0.66 +0.9 667,987 + hexR MCAODC_19080 0.27 -1.9 667,988 - hexR MCAODC_19080 0.27 +1.0 668,042 + hexR MCAODC_19080 0.34 +1.4 668,193 + hexR MCAODC_19080 0.51 +0.5 668,193 + hexR MCAODC_19080 0.51 +0.4 668,193 + hexR MCAODC_19080 0.51 +0.5 668,235 + hexR MCAODC_19080 0.56 -2.3 668,235 + hexR MCAODC_19080 0.56 -0.5 668,358 + hexR MCAODC_19080 0.70 +1.1 668,359 - hexR MCAODC_19080 0.70 +0.7 668,439 + hexR MCAODC_19080 0.79 -1.4 668,449 + hexR MCAODC_19080 0.80 -1.1 668,449 + hexR MCAODC_19080 0.80 -0.4 668,449 + hexR MCAODC_19080 0.80 +1.0 668,449 + hexR MCAODC_19080 0.80 +1.4 668,449 + hexR MCAODC_19080 0.80 +0.2 668,450 - hexR MCAODC_19080 0.80 -0.3 668,451 + hexR MCAODC_19080 0.81 +0.1 668,451 + hexR MCAODC_19080 0.81 +1.6 668,451 + hexR MCAODC_19080 0.81 +2.4 668,452 - hexR MCAODC_19080 0.81 +0.2 668,489 + hexR MCAODC_19080 0.85 +0.8 668,489 + hexR MCAODC_19080 0.85 -0.3 668,489 + hexR MCAODC_19080 0.85 +1.8 668,490 - hexR MCAODC_19080 0.85 -0.3 668,541 + +1.2 668,541 + -0.5 668,541 + +0.9 668,598 + +0.1 668,638 + -2.4 668,644 + +0.1 668,646 + -1.8 668,665 + -0.6 668,742 - -0.9 668,744 + +1.0 668,744 + +0.5 668,745 - -3.4 668,745 - -0.1 668,745 - -0.6 668,745 - -0.6 668,813 - +1.3 668,850 + +1.4 668,850 + -2.1 668,855 - -1.9 668,980 - pyk MCAODC_19085 0.16 -0.6 669,013 + pyk MCAODC_19085 0.18 -0.6 669,013 + pyk MCAODC_19085 0.18 -1.5 669,160 - pyk MCAODC_19085 0.29 -0.5 669,229 + pyk MCAODC_19085 0.33 +0.5 669,230 - pyk MCAODC_19085 0.33 -0.4 669,292 + pyk MCAODC_19085 0.38 -1.9 669,293 - pyk MCAODC_19085 0.38 -0.1 669,315 + pyk MCAODC_19085 0.39 -2.0 669,315 + pyk MCAODC_19085 0.39 -1.5 669,320 + pyk MCAODC_19085 0.40 +0.8 669,362 + pyk MCAODC_19085 0.43 -0.3 669,362 + pyk MCAODC_19085 0.43 +1.7 669,362 + pyk MCAODC_19085 0.43 -0.7 669,362 + pyk MCAODC_19085 0.43 -0.1
Or see this region's nucleotide sequence