Strain Fitness in Escherichia coli ECRC101 around MCAODC_15850

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpuuB and puuE are separated by 37 nucleotidespuuE and pspF are separated by 130 nucleotides MCAODC_15845: puuB - gamma-glutamylputrescine oxidase, at 62,028 to 63,308 puuB MCAODC_15850: puuE - 4-aminobutyrate transaminase, at 63,346 to 64,611 puuE MCAODC_15855: pspF - phage shock protein operon transcriptional activator, at 64,742 to 65,719 pspF Position (kb) 63 64 65Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 62.357 kb on + strand, within puuBat 62.420 kb on + strand, within puuBat 62.568 kb on - strand, within puuBat 62.632 kb on - strand, within puuBat 62.685 kb on - strand, within puuBat 62.712 kb on + strand, within puuBat 62.713 kb on - strand, within puuBat 62.853 kb on + strand, within puuBat 62.871 kb on - strand, within puuBat 62.938 kb on - strand, within puuBat 63.089 kb on + strand, within puuBat 63.099 kb on + strand, within puuBat 63.102 kb on + strand, within puuBat 63.103 kb on - strand, within puuBat 63.115 kb on - strand, within puuBat 63.318 kb on - strandat 63.575 kb on - strand, within puuEat 63.575 kb on - strand, within puuEat 63.598 kb on + strand, within puuEat 63.599 kb on - strand, within puuEat 63.599 kb on - strand, within puuEat 63.765 kb on + strand, within puuEat 63.766 kb on - strand, within puuEat 63.769 kb on + strand, within puuEat 63.769 kb on + strand, within puuEat 63.771 kb on + strand, within puuEat 63.771 kb on + strand, within puuEat 63.772 kb on - strand, within puuEat 63.778 kb on - strand, within puuEat 63.842 kb on - strand, within puuEat 63.848 kb on + strand, within puuEat 63.849 kb on - strand, within puuEat 63.849 kb on - strand, within puuEat 63.915 kb on + strand, within puuEat 64.130 kb on + strand, within puuEat 64.130 kb on + strand, within puuEat 64.130 kb on + strand, within puuEat 64.194 kb on + strand, within puuEat 64.195 kb on - strand, within puuEat 64.499 kb on + strandat 64.677 kb on + strandat 64.685 kb on - strandat 64.685 kb on - strandat 64.688 kb on + strandat 64.728 kb on - strandat 64.782 kb on + strandat 64.821 kb on + strandat 64.822 kb on - strandat 64.883 kb on + strand, within pspFat 64.883 kb on + strand, within pspFat 64.967 kb on - strand, within pspFat 65.161 kb on + strand, within pspFat 65.162 kb on - strand, within pspFat 65.162 kb on - strand, within pspFat 65.344 kb on - strand, within pspFat 65.344 kb on - strand, within pspFat 65.409 kb on - strand, within pspFat 65.409 kb on - strand, within pspFat 65.539 kb on + strand, within pspFat 65.568 kb on + strand, within pspF

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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62,357 + puuB MCAODC_15845 0.26 -0.6
62,420 + puuB MCAODC_15845 0.31 -3.3
62,568 - puuB MCAODC_15845 0.42 -0.5
62,632 - puuB MCAODC_15845 0.47 -2.8
62,685 - puuB MCAODC_15845 0.51 -0.6
62,712 + puuB MCAODC_15845 0.53 +0.9
62,713 - puuB MCAODC_15845 0.53 -0.6
62,853 + puuB MCAODC_15845 0.64 +0.0
62,871 - puuB MCAODC_15845 0.66 -0.4
62,938 - puuB MCAODC_15845 0.71 -1.1
63,089 + puuB MCAODC_15845 0.83 -0.1
63,099 + puuB MCAODC_15845 0.84 -2.7
63,102 + puuB MCAODC_15845 0.84 -2.2
63,103 - puuB MCAODC_15845 0.84 -0.7
63,115 - puuB MCAODC_15845 0.85 +0.8
63,318 - -0.2
63,575 - puuE MCAODC_15850 0.18 -2.3
63,575 - puuE MCAODC_15850 0.18 +2.3
63,598 + puuE MCAODC_15850 0.20 -1.2
63,599 - puuE MCAODC_15850 0.20 +0.4
63,599 - puuE MCAODC_15850 0.20 -0.8
63,765 + puuE MCAODC_15850 0.33 +0.0
63,766 - puuE MCAODC_15850 0.33 -2.1
63,769 + puuE MCAODC_15850 0.33 -2.0
63,769 + puuE MCAODC_15850 0.33 -1.7
63,771 + puuE MCAODC_15850 0.34 -2.2
63,771 + puuE MCAODC_15850 0.34 -1.9
63,772 - puuE MCAODC_15850 0.34 -1.4
63,778 - puuE MCAODC_15850 0.34 -0.1
63,842 - puuE MCAODC_15850 0.39 +0.9
63,848 + puuE MCAODC_15850 0.40 -0.4
63,849 - puuE MCAODC_15850 0.40 +1.0
63,849 - puuE MCAODC_15850 0.40 +1.5
63,915 + puuE MCAODC_15850 0.45 -0.4
64,130 + puuE MCAODC_15850 0.62 +0.0
64,130 + puuE MCAODC_15850 0.62 -1.4
64,130 + puuE MCAODC_15850 0.62 +2.5
64,194 + puuE MCAODC_15850 0.67 -0.1
64,195 - puuE MCAODC_15850 0.67 -0.7
64,499 + +0.3
64,677 + -0.3
64,685 - +0.7
64,685 - -0.6
64,688 + -1.9
64,728 - +0.6
64,782 + -1.4
64,821 + +1.4
64,822 - -2.7
64,883 + pspF MCAODC_15855 0.14 +2.0
64,883 + pspF MCAODC_15855 0.14 -1.7
64,967 - pspF MCAODC_15855 0.23 -2.4
65,161 + pspF MCAODC_15855 0.43 -1.0
65,162 - pspF MCAODC_15855 0.43 -2.0
65,162 - pspF MCAODC_15855 0.43 +1.6
65,344 - pspF MCAODC_15855 0.62 +0.1
65,344 - pspF MCAODC_15855 0.62 +0.8
65,409 - pspF MCAODC_15855 0.68 +0.8
65,409 - pspF MCAODC_15855 0.68 -0.5
65,539 + pspF MCAODC_15855 0.81 +1.3
65,568 + pspF MCAODC_15855 0.84 +1.6

Or see this region's nucleotide sequence