Strain Fitness in Escherichia coli ECRC101 around MCAODC_14180

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfaL and ubiG are separated by 140 nucleotidesubiG and gyrA are separated by 146 nucleotides MCAODC_14175: yfaL - AIDA-I family autotransporter adhesin YfaL/EhaC, at 2,777,768 to 2,781,520 yfaL MCAODC_14180: ubiG - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 2,781,661 to 2,782,383 ubiG MCAODC_14185: gyrA - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 2,782,530 to 2,785,157 gyrA Position (kb) 2781 2782 2783Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2780.683 kb on + strand, within yfaLat 2780.684 kb on - strand, within yfaLat 2780.684 kb on - strand, within yfaLat 2780.733 kb on + strand, within yfaLat 2780.754 kb on - strand, within yfaLat 2780.800 kb on + strand, within yfaLat 2780.800 kb on + strand, within yfaLat 2780.800 kb on + strand, within yfaLat 2780.801 kb on - strand, within yfaLat 2780.801 kb on - strand, within yfaLat 2781.027 kb on - strand, within yfaLat 2781.037 kb on + strand, within yfaLat 2781.037 kb on + strand, within yfaLat 2781.037 kb on + strand, within yfaLat 2781.078 kb on - strand, within yfaLat 2781.094 kb on + strand, within yfaLat 2781.241 kb on + strandat 2781.261 kb on + strandat 2781.295 kb on - strandat 2781.303 kb on + strandat 2781.304 kb on - strandat 2781.304 kb on - strandat 2781.315 kb on - strandat 2781.362 kb on - strandat 2781.418 kb on + strandat 2781.519 kb on - strandat 2781.539 kb on + strandat 2781.540 kb on - strandat 2781.540 kb on - strandat 2781.557 kb on - strandat 2781.590 kb on - strandat 2781.598 kb on + strandat 2781.599 kb on - strandat 2781.666 kb on + strandat 2782.394 kb on - strandat 2782.421 kb on - strandat 2782.422 kb on + strandat 2782.423 kb on - strandat 2782.423 kb on - strandat 2782.423 kb on - strandat 2782.442 kb on + strandat 2782.442 kb on + strandat 2782.443 kb on - strandat 2782.451 kb on + strandat 2782.451 kb on + strandat 2782.451 kb on + strandat 2782.451 kb on + strandat 2782.451 kb on + strandat 2782.895 kb on + strand, within gyrA

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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2,780,683 + yfaL MCAODC_14175 0.78 +1.1
2,780,684 - yfaL MCAODC_14175 0.78 +0.7
2,780,684 - yfaL MCAODC_14175 0.78 -0.7
2,780,733 + yfaL MCAODC_14175 0.79 -0.3
2,780,754 - yfaL MCAODC_14175 0.80 -1.8
2,780,800 + yfaL MCAODC_14175 0.81 -2.4
2,780,800 + yfaL MCAODC_14175 0.81 -0.9
2,780,800 + yfaL MCAODC_14175 0.81 +0.6
2,780,801 - yfaL MCAODC_14175 0.81 -1.6
2,780,801 - yfaL MCAODC_14175 0.81 -0.2
2,781,027 - yfaL MCAODC_14175 0.87 -1.4
2,781,037 + yfaL MCAODC_14175 0.87 +0.7
2,781,037 + yfaL MCAODC_14175 0.87 -0.6
2,781,037 + yfaL MCAODC_14175 0.87 -0.6
2,781,078 - yfaL MCAODC_14175 0.88 +1.0
2,781,094 + yfaL MCAODC_14175 0.89 -3.1
2,781,241 + +0.4
2,781,261 + -0.9
2,781,295 - +0.2
2,781,303 + -1.8
2,781,304 - +1.6
2,781,304 - -0.2
2,781,315 - +0.7
2,781,362 - +0.8
2,781,418 + -0.3
2,781,519 - +1.8
2,781,539 + -1.9
2,781,540 - +1.3
2,781,540 - -0.5
2,781,557 - +2.1
2,781,590 - -1.1
2,781,598 + +1.7
2,781,599 - -1.2
2,781,666 + -1.0
2,782,394 - -1.0
2,782,421 - +0.6
2,782,422 + +1.8
2,782,423 - -0.7
2,782,423 - +0.6
2,782,423 - +1.0
2,782,442 + +0.6
2,782,442 + -1.8
2,782,443 - +0.9
2,782,451 + +0.4
2,782,451 + -2.3
2,782,451 + +0.5
2,782,451 + +0.5
2,782,451 + -0.2
2,782,895 + gyrA MCAODC_14185 0.14 -2.0

Or see this region's nucleotide sequence