Strain Fitness in Escherichia coli ECRC101 around MCAODC_11675

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecN and nadK are separated by 85 nucleotidesnadK and grpE are separated by 122 nucleotidesgrpE and MCAODC_11685 are separated by 54 nucleotides MCAODC_11670: recN - DNA repair protein RecN, at 2,311,503 to 2,313,164 recN MCAODC_11675: nadK - NAD(+) kinase, at 2,313,250 to 2,314,128 nadK MCAODC_11680: grpE - nucleotide exchange factor GrpE, at 2,314,251 to 2,314,844 grpE MCAODC_11685: MCAODC_11685 - CorB transporter, at 2,314,899 to 2,315,405 _11685 Position (kb) 2313 2314 2315Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2312.346 kb on - strand, within recNat 2312.360 kb on + strand, within recNat 2312.360 kb on + strand, within recNat 2312.360 kb on + strand, within recNat 2312.583 kb on + strand, within recNat 2312.629 kb on - strand, within recNat 2312.700 kb on + strand, within recNat 2312.700 kb on + strand, within recNat 2312.720 kb on - strand, within recNat 2312.760 kb on + strand, within recNat 2313.048 kb on + strandat 2313.048 kb on + strandat 2313.049 kb on - strandat 2313.049 kb on - strandat 2313.049 kb on - strandat 2313.056 kb on + strandat 2313.057 kb on - strandat 2313.063 kb on - strandat 2313.084 kb on + strandat 2313.084 kb on + strandat 2313.085 kb on - strandat 2313.085 kb on - strandat 2313.085 kb on - strandat 2313.085 kb on - strandat 2313.087 kb on + strandat 2313.088 kb on - strandat 2313.088 kb on - strandat 2313.088 kb on - strandat 2313.165 kb on - strandat 2313.165 kb on - strandat 2313.165 kb on - strandat 2313.197 kb on + strandat 2313.209 kb on + strandat 2313.210 kb on - strandat 2313.222 kb on + strandat 2313.223 kb on - strandat 2313.225 kb on - strandat 2313.226 kb on + strandat 2313.226 kb on + strandat 2314.202 kb on + strandat 2314.825 kb on + strandat 2314.860 kb on + strandat 2314.944 kb on + strandat 2314.945 kb on - strandat 2314.952 kb on + strand, within MCAODC_11685at 2314.953 kb on - strand, within MCAODC_11685at 2314.953 kb on - strand, within MCAODC_11685at 2314.953 kb on - strand, within MCAODC_11685at 2314.953 kb on - strand, within MCAODC_11685at 2314.958 kb on + strand, within MCAODC_11685at 2314.958 kb on + strand, within MCAODC_11685at 2314.959 kb on - strand, within MCAODC_11685at 2314.959 kb on - strand, within MCAODC_11685at 2314.969 kb on - strand, within MCAODC_11685at 2314.969 kb on - strand, within MCAODC_11685at 2315.083 kb on - strand, within MCAODC_11685

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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2,312,346 - recN MCAODC_11670 0.51 +1.2
2,312,360 + recN MCAODC_11670 0.52 -0.3
2,312,360 + recN MCAODC_11670 0.52 +0.7
2,312,360 + recN MCAODC_11670 0.52 -0.3
2,312,583 + recN MCAODC_11670 0.65 -1.4
2,312,629 - recN MCAODC_11670 0.68 -0.0
2,312,700 + recN MCAODC_11670 0.72 +0.6
2,312,700 + recN MCAODC_11670 0.72 -3.0
2,312,720 - recN MCAODC_11670 0.73 -0.9
2,312,760 + recN MCAODC_11670 0.76 +1.5
2,313,048 + +1.2
2,313,048 + -0.5
2,313,049 - -0.1
2,313,049 - -0.6
2,313,049 - +0.7
2,313,056 + +0.1
2,313,057 - +0.9
2,313,063 - +0.3
2,313,084 + +0.2
2,313,084 + -1.5
2,313,085 - -3.0
2,313,085 - +0.5
2,313,085 - +0.3
2,313,085 - -0.3
2,313,087 + -0.9
2,313,088 - -1.4
2,313,088 - +0.8
2,313,088 - +0.7
2,313,165 - +0.4
2,313,165 - +1.4
2,313,165 - -1.3
2,313,197 + +0.5
2,313,209 + -1.4
2,313,210 - -1.7
2,313,222 + -1.9
2,313,223 - -0.5
2,313,225 - -0.2
2,313,226 + -0.0
2,313,226 + -0.3
2,314,202 + -1.5
2,314,825 + -1.5
2,314,860 + -0.2
2,314,944 + -3.1
2,314,945 - +0.4
2,314,952 + MCAODC_11685 0.10 +0.4
2,314,953 - MCAODC_11685 0.11 -0.3
2,314,953 - MCAODC_11685 0.11 +0.7
2,314,953 - MCAODC_11685 0.11 -3.7
2,314,953 - MCAODC_11685 0.11 +2.2
2,314,958 + MCAODC_11685 0.12 +0.1
2,314,958 + MCAODC_11685 0.12 -1.4
2,314,959 - MCAODC_11685 0.12 -0.0
2,314,959 - MCAODC_11685 0.12 -0.3
2,314,969 - MCAODC_11685 0.14 +0.1
2,314,969 - MCAODC_11685 0.14 -0.7
2,315,083 - MCAODC_11685 0.36 -0.6

Or see this region's nucleotide sequence