Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zntA and yhhN are separated by 73 nucleotides yhhN and yhhM are separated by 140 nucleotides yhhM and yhhL are separated by 2 nucleotides yhhL and rsmD overlap by 11 nucleotides
MCAODC_07205: zntA - Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA, at 1,458,299 to 1,460,497
zntA
MCAODC_07210: yhhN - Uncharacterized membrane protein YhhN, at 1,460,571 to 1,461,197
yhhN
MCAODC_07215: yhhM - Uncharacterized protein YhhM, at 1,461,338 to 1,461,697
yhhM
MCAODC_07220: yhhL - DUF1145 domain-containing protein, at 1,461,700 to 1,461,969
yhhL
MCAODC_07225: rsmD - 16S rRNA (guanine(966)-N(2))-methyltransferase, at 1,461,959 to 1,462,555
rsmD
Position (kb) 1460
1461
1462 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1459.571 kb on + strand, within zntA at 1459.572 kb on - strand, within zntA at 1459.572 kb on - strand, within zntA at 1459.624 kb on + strand, within zntA at 1459.678 kb on + strand, within zntA at 1459.910 kb on - strand, within zntA at 1459.910 kb on - strand, within zntA at 1459.940 kb on + strand, within zntA at 1459.959 kb on + strand, within zntA at 1459.959 kb on + strand, within zntA at 1460.057 kb on - strand, within zntA at 1460.057 kb on - strand, within zntA at 1460.057 kb on - strand, within zntA at 1460.102 kb on - strand, within zntA at 1460.102 kb on - strand, within zntA at 1460.347 kb on + strand at 1460.347 kb on + strand at 1460.347 kb on + strand at 1460.348 kb on - strand at 1460.348 kb on - strand at 1460.348 kb on - strand at 1460.350 kb on - strand at 1460.569 kb on + strand at 1460.578 kb on + strand at 1460.579 kb on - strand at 1460.579 kb on - strand at 1460.579 kb on - strand at 1460.614 kb on + strand at 1460.615 kb on - strand at 1460.615 kb on - strand at 1460.690 kb on + strand, within yhhN at 1460.691 kb on - strand, within yhhN at 1460.691 kb on - strand, within yhhN at 1460.804 kb on + strand, within yhhN at 1460.804 kb on + strand, within yhhN at 1460.804 kb on + strand, within yhhN at 1460.815 kb on + strand, within yhhN at 1460.815 kb on + strand, within yhhN at 1460.815 kb on + strand, within yhhN at 1460.816 kb on - strand, within yhhN at 1460.837 kb on + strand, within yhhN at 1460.920 kb on + strand, within yhhN at 1460.920 kb on + strand, within yhhN at 1460.920 kb on + strand, within yhhN at 1460.929 kb on + strand, within yhhN at 1460.929 kb on + strand, within yhhN at 1460.929 kb on + strand, within yhhN at 1460.929 kb on + strand, within yhhN at 1460.929 kb on + strand, within yhhN at 1460.930 kb on - strand, within yhhN at 1460.930 kb on - strand, within yhhN at 1460.930 kb on - strand, within yhhN at 1460.930 kb on - strand, within yhhN at 1460.965 kb on + strand, within yhhN at 1460.966 kb on - strand, within yhhN at 1460.966 kb on - strand, within yhhN at 1461.040 kb on + strand, within yhhN at 1461.040 kb on + strand, within yhhN at 1461.040 kb on + strand, within yhhN at 1461.041 kb on - strand, within yhhN at 1461.041 kb on - strand, within yhhN at 1461.044 kb on + strand, within yhhN at 1461.044 kb on + strand, within yhhN at 1461.045 kb on - strand, within yhhN at 1461.045 kb on - strand, within yhhN at 1461.045 kb on - strand, within yhhN at 1461.078 kb on + strand, within yhhN at 1461.078 kb on + strand, within yhhN at 1461.078 kb on + strand, within yhhN at 1461.079 kb on - strand, within yhhN at 1461.108 kb on - strand, within yhhN at 1461.156 kb on + strand at 1461.157 kb on - strand at 1461.200 kb on + strand at 1461.200 kb on + strand at 1461.201 kb on - strand at 1461.240 kb on + strand at 1461.290 kb on + strand at 1461.291 kb on - strand at 1461.291 kb on - strand at 1461.291 kb on - strand at 1461.291 kb on - strand at 1461.291 kb on - strand at 1461.291 kb on - strand at 1461.291 kb on - strand at 1461.291 kb on - strand at 1461.291 kb on - strand at 1461.291 kb on - strand at 1461.302 kb on + strand at 1461.302 kb on + strand at 1461.308 kb on + strand at 1461.308 kb on + strand at 1461.308 kb on + strand at 1461.308 kb on + strand at 1461.309 kb on - strand at 1461.440 kb on - strand, within yhhM at 1461.544 kb on + strand, within yhhM at 1461.544 kb on + strand, within yhhM at 1461.544 kb on + strand, within yhhM at 1461.544 kb on + strand, within yhhM at 1461.617 kb on + strand, within yhhM at 1461.618 kb on - strand, within yhhM at 1461.618 kb on - strand, within yhhM at 1461.618 kb on - strand, within yhhM at 1461.641 kb on - strand, within yhhM at 1461.646 kb on + strand, within yhhM at 1461.656 kb on + strand, within yhhM at 1461.656 kb on + strand, within yhhM at 1461.656 kb on + strand, within yhhM at 1461.656 kb on + strand, within yhhM at 1461.657 kb on - strand, within yhhM at 1461.657 kb on - strand, within yhhM at 1461.659 kb on - strand, within yhhM at 1461.677 kb on - strand at 1461.677 kb on - strand at 1461.695 kb on + strand at 1461.695 kb on + strand at 1461.695 kb on + strand at 1461.695 kb on + strand at 1461.695 kb on + strand at 1461.820 kb on + strand, within yhhL at 1461.834 kb on + strand, within yhhL at 1461.835 kb on - strand, within yhhL at 1461.835 kb on - strand, within yhhL at 1461.958 kb on - strand at 1461.958 kb on - strand at 1461.960 kb on + strand at 1461.961 kb on - strand at 1462.038 kb on - strand, within rsmD at 1462.038 kb on - strand, within rsmD at 1462.038 kb on - strand, within rsmD at 1462.093 kb on - strand, within rsmD at 1462.093 kb on - strand, within rsmD at 1462.139 kb on + strand, within rsmD at 1462.140 kb on - strand, within rsmD at 1462.152 kb on - strand, within rsmD at 1462.190 kb on - strand, within rsmD at 1462.193 kb on - strand, within rsmD
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,459,571 + zntA MCAODC_07205 0.58 -4.3 1,459,572 - zntA MCAODC_07205 0.58 -2.6 1,459,572 - zntA MCAODC_07205 0.58 +0.6 1,459,624 + zntA MCAODC_07205 0.60 -0.7 1,459,678 + zntA MCAODC_07205 0.63 -2.7 1,459,910 - zntA MCAODC_07205 0.73 +1.4 1,459,910 - zntA MCAODC_07205 0.73 +1.3 1,459,940 + zntA MCAODC_07205 0.75 -0.2 1,459,959 + zntA MCAODC_07205 0.75 -0.9 1,459,959 + zntA MCAODC_07205 0.75 -1.1 1,460,057 - zntA MCAODC_07205 0.80 -0.1 1,460,057 - zntA MCAODC_07205 0.80 +0.9 1,460,057 - zntA MCAODC_07205 0.80 -0.9 1,460,102 - zntA MCAODC_07205 0.82 -0.3 1,460,102 - zntA MCAODC_07205 0.82 +0.8 1,460,347 + +0.3 1,460,347 + -1.5 1,460,347 + -0.3 1,460,348 - +1.9 1,460,348 - -0.1 1,460,348 - +1.1 1,460,350 - -0.5 1,460,569 + +0.5 1,460,578 + +1.6 1,460,579 - +1.7 1,460,579 - -0.1 1,460,579 - +0.5 1,460,614 + -2.3 1,460,615 - -1.7 1,460,615 - -1.9 1,460,690 + yhhN MCAODC_07210 0.19 -0.6 1,460,691 - yhhN MCAODC_07210 0.19 +0.6 1,460,691 - yhhN MCAODC_07210 0.19 +1.0 1,460,804 + yhhN MCAODC_07210 0.37 +1.6 1,460,804 + yhhN MCAODC_07210 0.37 +0.2 1,460,804 + yhhN MCAODC_07210 0.37 +1.2 1,460,815 + yhhN MCAODC_07210 0.39 +1.0 1,460,815 + yhhN MCAODC_07210 0.39 -0.1 1,460,815 + yhhN MCAODC_07210 0.39 -0.2 1,460,816 - yhhN MCAODC_07210 0.39 -0.4 1,460,837 + yhhN MCAODC_07210 0.42 -0.5 1,460,920 + yhhN MCAODC_07210 0.56 +1.6 1,460,920 + yhhN MCAODC_07210 0.56 -1.1 1,460,920 + yhhN MCAODC_07210 0.56 +1.7 1,460,929 + yhhN MCAODC_07210 0.57 +0.7 1,460,929 + yhhN MCAODC_07210 0.57 -0.0 1,460,929 + yhhN MCAODC_07210 0.57 +0.5 1,460,929 + yhhN MCAODC_07210 0.57 +0.9 1,460,929 + yhhN MCAODC_07210 0.57 +0.7 1,460,930 - yhhN MCAODC_07210 0.57 +0.2 1,460,930 - yhhN MCAODC_07210 0.57 +0.1 1,460,930 - yhhN MCAODC_07210 0.57 -4.3 1,460,930 - yhhN MCAODC_07210 0.57 +0.7 1,460,965 + yhhN MCAODC_07210 0.63 +0.4 1,460,966 - yhhN MCAODC_07210 0.63 -0.2 1,460,966 - yhhN MCAODC_07210 0.63 -1.1 1,461,040 + yhhN MCAODC_07210 0.75 +0.4 1,461,040 + yhhN MCAODC_07210 0.75 +1.2 1,461,040 + yhhN MCAODC_07210 0.75 -0.1 1,461,041 - yhhN MCAODC_07210 0.75 +0.2 1,461,041 - yhhN MCAODC_07210 0.75 +0.2 1,461,044 + yhhN MCAODC_07210 0.75 -0.2 1,461,044 + yhhN MCAODC_07210 0.75 +1.3 1,461,045 - yhhN MCAODC_07210 0.76 -0.3 1,461,045 - yhhN MCAODC_07210 0.76 -1.1 1,461,045 - yhhN MCAODC_07210 0.76 -0.5 1,461,078 + yhhN MCAODC_07210 0.81 +0.1 1,461,078 + yhhN MCAODC_07210 0.81 +0.3 1,461,078 + yhhN MCAODC_07210 0.81 +0.1 1,461,079 - yhhN MCAODC_07210 0.81 +0.3 1,461,108 - yhhN MCAODC_07210 0.86 -0.0 1,461,156 + +0.9 1,461,157 - +1.3 1,461,200 + +1.2 1,461,200 + +0.3 1,461,201 - +0.1 1,461,240 + +1.1 1,461,290 + -0.6 1,461,291 - +0.8 1,461,291 - +0.6 1,461,291 - +0.3 1,461,291 - +0.2 1,461,291 - -0.1 1,461,291 - -0.5 1,461,291 - -0.7 1,461,291 - +0.3 1,461,291 - -2.1 1,461,291 - -1.4 1,461,302 + -0.1 1,461,302 + -0.5 1,461,308 + +0.0 1,461,308 + -0.7 1,461,308 + -1.0 1,461,308 + -0.1 1,461,309 - -0.7 1,461,440 - yhhM MCAODC_07215 0.28 +1.0 1,461,544 + yhhM MCAODC_07215 0.57 -3.2 1,461,544 + yhhM MCAODC_07215 0.57 +0.3 1,461,544 + yhhM MCAODC_07215 0.57 +0.3 1,461,544 + yhhM MCAODC_07215 0.57 +1.2 1,461,617 + yhhM MCAODC_07215 0.78 -0.2 1,461,618 - yhhM MCAODC_07215 0.78 -1.7 1,461,618 - yhhM MCAODC_07215 0.78 -0.7 1,461,618 - yhhM MCAODC_07215 0.78 -2.7 1,461,641 - yhhM MCAODC_07215 0.84 +1.2 1,461,646 + yhhM MCAODC_07215 0.86 -0.4 1,461,656 + yhhM MCAODC_07215 0.88 +0.3 1,461,656 + yhhM MCAODC_07215 0.88 +0.0 1,461,656 + yhhM MCAODC_07215 0.88 -0.3 1,461,656 + yhhM MCAODC_07215 0.88 -0.1 1,461,657 - yhhM MCAODC_07215 0.89 -1.0 1,461,657 - yhhM MCAODC_07215 0.89 -1.0 1,461,659 - yhhM MCAODC_07215 0.89 -4.0 1,461,677 - -0.1 1,461,677 - +0.3 1,461,695 + +0.3 1,461,695 + +1.2 1,461,695 + +0.5 1,461,695 + +0.4 1,461,695 + +0.6 1,461,820 + yhhL MCAODC_07220 0.44 +1.3 1,461,834 + yhhL MCAODC_07220 0.50 -3.1 1,461,835 - yhhL MCAODC_07220 0.50 -1.0 1,461,835 - yhhL MCAODC_07220 0.50 +1.1 1,461,958 - -0.6 1,461,958 - +0.4 1,461,960 + -0.2 1,461,961 - +1.3 1,462,038 - rsmD MCAODC_07225 0.13 +1.3 1,462,038 - rsmD MCAODC_07225 0.13 +0.1 1,462,038 - rsmD MCAODC_07225 0.13 +0.7 1,462,093 - rsmD MCAODC_07225 0.22 +1.4 1,462,093 - rsmD MCAODC_07225 0.22 +0.6 1,462,139 + rsmD MCAODC_07225 0.30 +0.8 1,462,140 - rsmD MCAODC_07225 0.30 -4.4 1,462,152 - rsmD MCAODC_07225 0.32 +0.1 1,462,190 - rsmD MCAODC_07225 0.39 +0.4 1,462,193 - rsmD MCAODC_07225 0.39 -0.4
Or see this region's nucleotide sequence