Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xylH and xylG overlap by 23 nucleotides xylG and xylF are separated by 77 nucleotides
MCAODC_06455: xylH - xylose ABC transporter permease XylH, at 1,305,099 to 1,306,280
xylH
MCAODC_06460: xylG - D-xylose ABC transporter ATP-binding protein, at 1,306,258 to 1,307,799
xylG
MCAODC_06465: xylF - D-xylose ABC transporter substrate-binding protein, at 1,307,877 to 1,308,869
xylF
Position (kb) 1306
1307
1308 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1305.366 kb on + strand, within xylH at 1305.387 kb on + strand, within xylH at 1305.387 kb on + strand, within xylH at 1305.388 kb on - strand, within xylH at 1305.395 kb on + strand, within xylH at 1305.431 kb on + strand, within xylH at 1305.432 kb on - strand, within xylH at 1305.475 kb on + strand, within xylH at 1305.476 kb on - strand, within xylH at 1305.509 kb on + strand, within xylH at 1305.555 kb on - strand, within xylH at 1305.597 kb on + strand, within xylH at 1305.598 kb on - strand, within xylH at 1305.613 kb on - strand, within xylH at 1305.711 kb on + strand, within xylH at 1305.754 kb on + strand, within xylH at 1305.754 kb on + strand, within xylH at 1305.795 kb on + strand, within xylH at 1305.795 kb on + strand, within xylH at 1305.825 kb on + strand, within xylH at 1305.826 kb on - strand, within xylH at 1305.864 kb on - strand, within xylH at 1305.864 kb on - strand, within xylH at 1305.864 kb on - strand, within xylH at 1305.947 kb on + strand, within xylH at 1305.948 kb on - strand, within xylH at 1305.948 kb on - strand, within xylH at 1305.948 kb on - strand, within xylH at 1305.966 kb on + strand, within xylH at 1305.966 kb on + strand, within xylH at 1306.000 kb on - strand, within xylH at 1306.000 kb on - strand, within xylH at 1306.003 kb on - strand, within xylH at 1306.098 kb on + strand, within xylH at 1306.125 kb on + strand, within xylH at 1306.125 kb on + strand, within xylH at 1306.125 kb on + strand, within xylH at 1306.126 kb on - strand, within xylH at 1306.126 kb on - strand, within xylH at 1306.126 kb on - strand, within xylH at 1306.129 kb on + strand, within xylH at 1306.152 kb on - strand, within xylH at 1306.175 kb on + strand at 1306.175 kb on + strand at 1306.329 kb on + strand at 1306.337 kb on - strand at 1306.351 kb on + strand at 1306.351 kb on + strand at 1306.352 kb on - strand at 1306.369 kb on + strand at 1306.369 kb on + strand at 1306.370 kb on - strand at 1306.370 kb on - strand at 1306.370 kb on - strand at 1306.372 kb on + strand at 1306.372 kb on + strand at 1306.373 kb on - strand at 1306.373 kb on - strand at 1306.373 kb on - strand at 1306.373 kb on - strand at 1306.373 kb on - strand at 1306.373 kb on - strand at 1306.373 kb on - strand at 1306.375 kb on + strand at 1306.375 kb on + strand at 1306.375 kb on + strand at 1306.386 kb on + strand at 1306.425 kb on + strand, within xylG at 1306.466 kb on + strand, within xylG at 1306.467 kb on - strand, within xylG at 1306.467 kb on - strand, within xylG at 1306.467 kb on - strand, within xylG at 1306.534 kb on - strand, within xylG at 1306.537 kb on + strand, within xylG at 1306.537 kb on + strand, within xylG at 1306.538 kb on - strand, within xylG at 1306.538 kb on - strand, within xylG at 1306.538 kb on - strand, within xylG at 1306.593 kb on + strand, within xylG at 1306.594 kb on - strand, within xylG at 1306.618 kb on - strand, within xylG at 1306.647 kb on + strand, within xylG at 1306.648 kb on - strand, within xylG at 1306.693 kb on - strand, within xylG at 1306.719 kb on + strand, within xylG at 1306.719 kb on + strand, within xylG at 1306.719 kb on + strand, within xylG at 1306.726 kb on - strand, within xylG at 1306.812 kb on + strand, within xylG at 1306.813 kb on - strand, within xylG at 1306.813 kb on - strand, within xylG at 1306.819 kb on - strand, within xylG at 1306.823 kb on - strand, within xylG at 1306.823 kb on - strand, within xylG at 1306.823 kb on - strand, within xylG at 1306.840 kb on - strand, within xylG at 1306.841 kb on + strand, within xylG at 1306.900 kb on - strand, within xylG at 1306.968 kb on + strand, within xylG at 1306.968 kb on + strand, within xylG at 1306.969 kb on - strand, within xylG at 1306.977 kb on + strand, within xylG at 1306.977 kb on + strand, within xylG at 1306.978 kb on - strand, within xylG at 1306.978 kb on - strand, within xylG at 1307.020 kb on - strand, within xylG at 1307.023 kb on + strand, within xylG at 1307.024 kb on - strand, within xylG at 1307.043 kb on + strand, within xylG at 1307.043 kb on + strand, within xylG at 1307.043 kb on + strand, within xylG at 1307.044 kb on - strand, within xylG at 1307.044 kb on - strand, within xylG at 1307.044 kb on - strand, within xylG at 1307.097 kb on + strand, within xylG at 1307.101 kb on - strand, within xylG at 1307.208 kb on + strand, within xylG at 1307.211 kb on - strand, within xylG at 1307.214 kb on + strand, within xylG at 1307.214 kb on + strand, within xylG at 1307.215 kb on - strand, within xylG at 1307.236 kb on + strand, within xylG at 1307.236 kb on + strand, within xylG at 1307.247 kb on + strand, within xylG at 1307.248 kb on - strand, within xylG at 1307.281 kb on + strand, within xylG at 1307.308 kb on + strand, within xylG at 1307.329 kb on - strand, within xylG at 1307.329 kb on - strand, within xylG at 1307.372 kb on - strand, within xylG at 1307.437 kb on + strand, within xylG at 1307.438 kb on - strand, within xylG at 1307.496 kb on + strand, within xylG at 1307.496 kb on + strand, within xylG at 1307.554 kb on - strand, within xylG at 1307.610 kb on + strand, within xylG at 1307.611 kb on - strand, within xylG at 1307.625 kb on - strand, within xylG at 1307.639 kb on + strand, within xylG at 1307.639 kb on + strand, within xylG at 1307.639 kb on + strand, within xylG at 1307.640 kb on - strand, within xylG at 1307.643 kb on + strand, within xylG at 1307.788 kb on + strand at 1307.800 kb on - strand at 1307.813 kb on - strand at 1307.878 kb on + strand at 1307.878 kb on + strand at 1307.909 kb on + strand at 1307.910 kb on - strand at 1307.914 kb on - strand at 1307.987 kb on + strand, within xylF at 1307.988 kb on - strand, within xylF at 1307.988 kb on - strand, within xylF at 1307.992 kb on - strand, within xylF at 1307.999 kb on + strand, within xylF at 1307.999 kb on + strand, within xylF at 1307.999 kb on + strand, within xylF at 1308.054 kb on - strand, within xylF at 1308.069 kb on - strand, within xylF at 1308.071 kb on + strand, within xylF at 1308.071 kb on + strand, within xylF at 1308.071 kb on + strand, within xylF at 1308.071 kb on + strand, within xylF at 1308.072 kb on - strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.079 kb on + strand, within xylF at 1308.079 kb on + strand, within xylF at 1308.080 kb on - strand, within xylF at 1308.080 kb on - strand, within xylF at 1308.089 kb on + strand, within xylF at 1308.089 kb on + strand, within xylF at 1308.090 kb on - strand, within xylF at 1308.111 kb on - strand, within xylF at 1308.111 kb on - strand, within xylF at 1308.111 kb on - strand, within xylF at 1308.116 kb on + strand, within xylF at 1308.119 kb on + strand, within xylF at 1308.181 kb on - strand, within xylF at 1308.225 kb on + strand, within xylF at 1308.226 kb on - strand, within xylF at 1308.226 kb on - strand, within xylF at 1308.226 kb on - strand, within xylF at 1308.245 kb on + strand, within xylF at 1308.346 kb on + strand, within xylF at 1308.346 kb on + strand, within xylF at 1308.347 kb on - strand, within xylF at 1308.347 kb on - strand, within xylF at 1308.347 kb on - strand, within xylF at 1308.386 kb on + strand, within xylF at 1308.387 kb on - strand, within xylF at 1308.424 kb on + strand, within xylF at 1308.425 kb on - strand, within xylF at 1308.425 kb on - strand, within xylF at 1308.528 kb on - strand, within xylF at 1308.535 kb on + strand, within xylF at 1308.536 kb on - strand, within xylF at 1308.536 kb on - strand, within xylF at 1308.581 kb on + strand, within xylF at 1308.581 kb on + strand, within xylF at 1308.582 kb on - strand, within xylF at 1308.691 kb on - strand, within xylF at 1308.786 kb on + strand at 1308.786 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,305,366 + xylH MCAODC_06455 0.23 +0.8 1,305,387 + xylH MCAODC_06455 0.24 +3.1 1,305,387 + xylH MCAODC_06455 0.24 +0.4 1,305,388 - xylH MCAODC_06455 0.24 -0.7 1,305,395 + xylH MCAODC_06455 0.25 +1.0 1,305,431 + xylH MCAODC_06455 0.28 -0.7 1,305,432 - xylH MCAODC_06455 0.28 +0.5 1,305,475 + xylH MCAODC_06455 0.32 -0.6 1,305,476 - xylH MCAODC_06455 0.32 -0.1 1,305,509 + xylH MCAODC_06455 0.35 +1.0 1,305,555 - xylH MCAODC_06455 0.39 -1.1 1,305,597 + xylH MCAODC_06455 0.42 -0.1 1,305,598 - xylH MCAODC_06455 0.42 +0.7 1,305,613 - xylH MCAODC_06455 0.43 +0.1 1,305,711 + xylH MCAODC_06455 0.52 +1.0 1,305,754 + xylH MCAODC_06455 0.55 -0.7 1,305,754 + xylH MCAODC_06455 0.55 +0.4 1,305,795 + xylH MCAODC_06455 0.59 -0.7 1,305,795 + xylH MCAODC_06455 0.59 -0.1 1,305,825 + xylH MCAODC_06455 0.61 -0.6 1,305,826 - xylH MCAODC_06455 0.62 +0.5 1,305,864 - xylH MCAODC_06455 0.65 -0.6 1,305,864 - xylH MCAODC_06455 0.65 +1.3 1,305,864 - xylH MCAODC_06455 0.65 +0.0 1,305,947 + xylH MCAODC_06455 0.72 -1.5 1,305,948 - xylH MCAODC_06455 0.72 +0.7 1,305,948 - xylH MCAODC_06455 0.72 +0.6 1,305,948 - xylH MCAODC_06455 0.72 +0.5 1,305,966 + xylH MCAODC_06455 0.73 -0.3 1,305,966 + xylH MCAODC_06455 0.73 +1.3 1,306,000 - xylH MCAODC_06455 0.76 +0.4 1,306,000 - xylH MCAODC_06455 0.76 -1.4 1,306,003 - xylH MCAODC_06455 0.76 -1.1 1,306,098 + xylH MCAODC_06455 0.85 +0.6 1,306,125 + xylH MCAODC_06455 0.87 -0.1 1,306,125 + xylH MCAODC_06455 0.87 +1.0 1,306,125 + xylH MCAODC_06455 0.87 +0.6 1,306,126 - xylH MCAODC_06455 0.87 +0.9 1,306,126 - xylH MCAODC_06455 0.87 -0.4 1,306,126 - xylH MCAODC_06455 0.87 +0.7 1,306,129 + xylH MCAODC_06455 0.87 +0.9 1,306,152 - xylH MCAODC_06455 0.89 +0.8 1,306,175 + -1.5 1,306,175 + +0.1 1,306,329 + +0.6 1,306,337 - -1.8 1,306,351 + -3.4 1,306,351 + +1.8 1,306,352 - -1.5 1,306,369 + -0.3 1,306,369 + -4.1 1,306,370 - +0.1 1,306,370 - -0.8 1,306,370 - -1.2 1,306,372 + +0.4 1,306,372 + +0.3 1,306,373 - -2.1 1,306,373 - -1.3 1,306,373 - -0.6 1,306,373 - +0.2 1,306,373 - +2.8 1,306,373 - +0.2 1,306,373 - +0.6 1,306,375 + -1.5 1,306,375 + +0.2 1,306,375 + +1.8 1,306,386 + +1.4 1,306,425 + xylG MCAODC_06460 0.11 +0.5 1,306,466 + xylG MCAODC_06460 0.13 +0.6 1,306,467 - xylG MCAODC_06460 0.14 +0.6 1,306,467 - xylG MCAODC_06460 0.14 -0.3 1,306,467 - xylG MCAODC_06460 0.14 -2.7 1,306,534 - xylG MCAODC_06460 0.18 -2.1 1,306,537 + xylG MCAODC_06460 0.18 +0.5 1,306,537 + xylG MCAODC_06460 0.18 -0.7 1,306,538 - xylG MCAODC_06460 0.18 -1.1 1,306,538 - xylG MCAODC_06460 0.18 -0.3 1,306,538 - xylG MCAODC_06460 0.18 +0.9 1,306,593 + xylG MCAODC_06460 0.22 -0.2 1,306,594 - xylG MCAODC_06460 0.22 +0.4 1,306,618 - xylG MCAODC_06460 0.23 +0.6 1,306,647 + xylG MCAODC_06460 0.25 -1.2 1,306,648 - xylG MCAODC_06460 0.25 +2.3 1,306,693 - xylG MCAODC_06460 0.28 +0.9 1,306,719 + xylG MCAODC_06460 0.30 +1.0 1,306,719 + xylG MCAODC_06460 0.30 +0.1 1,306,719 + xylG MCAODC_06460 0.30 +1.3 1,306,726 - xylG MCAODC_06460 0.30 +0.5 1,306,812 + xylG MCAODC_06460 0.36 +0.3 1,306,813 - xylG MCAODC_06460 0.36 -0.3 1,306,813 - xylG MCAODC_06460 0.36 +0.3 1,306,819 - xylG MCAODC_06460 0.36 -0.6 1,306,823 - xylG MCAODC_06460 0.37 +0.7 1,306,823 - xylG MCAODC_06460 0.37 +0.5 1,306,823 - xylG MCAODC_06460 0.37 -2.0 1,306,840 - xylG MCAODC_06460 0.38 -1.1 1,306,841 + xylG MCAODC_06460 0.38 -0.9 1,306,900 - xylG MCAODC_06460 0.42 +1.2 1,306,968 + xylG MCAODC_06460 0.46 -1.8 1,306,968 + xylG MCAODC_06460 0.46 -0.8 1,306,969 - xylG MCAODC_06460 0.46 -0.9 1,306,977 + xylG MCAODC_06460 0.47 +1.3 1,306,977 + xylG MCAODC_06460 0.47 +0.2 1,306,978 - xylG MCAODC_06460 0.47 +0.3 1,306,978 - xylG MCAODC_06460 0.47 +1.5 1,307,020 - xylG MCAODC_06460 0.49 +0.9 1,307,023 + xylG MCAODC_06460 0.50 -1.7 1,307,024 - xylG MCAODC_06460 0.50 -0.5 1,307,043 + xylG MCAODC_06460 0.51 +0.7 1,307,043 + xylG MCAODC_06460 0.51 -0.0 1,307,043 + xylG MCAODC_06460 0.51 +0.3 1,307,044 - xylG MCAODC_06460 0.51 -1.3 1,307,044 - xylG MCAODC_06460 0.51 -0.3 1,307,044 - xylG MCAODC_06460 0.51 +0.8 1,307,097 + xylG MCAODC_06460 0.54 -2.2 1,307,101 - xylG MCAODC_06460 0.55 +0.4 1,307,208 + xylG MCAODC_06460 0.62 +0.2 1,307,211 - xylG MCAODC_06460 0.62 +0.2 1,307,214 + xylG MCAODC_06460 0.62 -2.8 1,307,214 + xylG MCAODC_06460 0.62 -1.2 1,307,215 - xylG MCAODC_06460 0.62 -0.5 1,307,236 + xylG MCAODC_06460 0.63 +1.2 1,307,236 + xylG MCAODC_06460 0.63 +0.4 1,307,247 + xylG MCAODC_06460 0.64 +0.4 1,307,248 - xylG MCAODC_06460 0.64 +0.1 1,307,281 + xylG MCAODC_06460 0.66 +1.1 1,307,308 + xylG MCAODC_06460 0.68 +1.0 1,307,329 - xylG MCAODC_06460 0.69 -0.1 1,307,329 - xylG MCAODC_06460 0.69 +0.2 1,307,372 - xylG MCAODC_06460 0.72 -0.5 1,307,437 + xylG MCAODC_06460 0.76 +0.6 1,307,438 - xylG MCAODC_06460 0.77 -0.4 1,307,496 + xylG MCAODC_06460 0.80 -2.4 1,307,496 + xylG MCAODC_06460 0.80 -1.1 1,307,554 - xylG MCAODC_06460 0.84 +2.3 1,307,610 + xylG MCAODC_06460 0.88 +0.2 1,307,611 - xylG MCAODC_06460 0.88 -0.9 1,307,625 - xylG MCAODC_06460 0.89 +0.6 1,307,639 + xylG MCAODC_06460 0.90 +1.2 1,307,639 + xylG MCAODC_06460 0.90 -0.9 1,307,639 + xylG MCAODC_06460 0.90 -2.4 1,307,640 - xylG MCAODC_06460 0.90 -0.0 1,307,643 + xylG MCAODC_06460 0.90 -1.6 1,307,788 + +1.2 1,307,800 - +0.6 1,307,813 - -3.8 1,307,878 + -1.0 1,307,878 + +0.8 1,307,909 + +0.7 1,307,910 - -0.2 1,307,914 - -3.9 1,307,987 + xylF MCAODC_06465 0.11 +0.3 1,307,988 - xylF MCAODC_06465 0.11 +0.8 1,307,988 - xylF MCAODC_06465 0.11 -0.7 1,307,992 - xylF MCAODC_06465 0.12 -0.8 1,307,999 + xylF MCAODC_06465 0.12 -3.2 1,307,999 + xylF MCAODC_06465 0.12 -0.1 1,307,999 + xylF MCAODC_06465 0.12 +0.6 1,308,054 - xylF MCAODC_06465 0.18 -0.2 1,308,069 - xylF MCAODC_06465 0.19 +0.9 1,308,071 + xylF MCAODC_06465 0.20 +1.1 1,308,071 + xylF MCAODC_06465 0.20 +0.8 1,308,071 + xylF MCAODC_06465 0.20 +1.1 1,308,071 + xylF MCAODC_06465 0.20 -1.4 1,308,072 - xylF MCAODC_06465 0.20 -0.9 1,308,077 + xylF MCAODC_06465 0.20 +0.8 1,308,077 + xylF MCAODC_06465 0.20 +0.7 1,308,077 + xylF MCAODC_06465 0.20 +0.0 1,308,077 + xylF MCAODC_06465 0.20 -0.1 1,308,077 + xylF MCAODC_06465 0.20 +0.4 1,308,077 + xylF MCAODC_06465 0.20 +0.6 1,308,077 + xylF MCAODC_06465 0.20 -1.3 1,308,077 + xylF MCAODC_06465 0.20 -0.2 1,308,078 - xylF MCAODC_06465 0.20 +0.1 1,308,078 - xylF MCAODC_06465 0.20 +1.2 1,308,078 - xylF MCAODC_06465 0.20 +0.0 1,308,078 - xylF MCAODC_06465 0.20 -1.0 1,308,078 - xylF MCAODC_06465 0.20 -0.6 1,308,078 - xylF MCAODC_06465 0.20 +0.6 1,308,078 - xylF MCAODC_06465 0.20 -1.6 1,308,078 - xylF MCAODC_06465 0.20 +0.7 1,308,079 + xylF MCAODC_06465 0.20 +0.2 1,308,079 + xylF MCAODC_06465 0.20 -0.3 1,308,080 - xylF MCAODC_06465 0.20 +0.5 1,308,080 - xylF MCAODC_06465 0.20 -0.1 1,308,089 + xylF MCAODC_06465 0.21 +0.2 1,308,089 + xylF MCAODC_06465 0.21 -2.1 1,308,090 - xylF MCAODC_06465 0.21 -0.4 1,308,111 - xylF MCAODC_06465 0.24 +1.1 1,308,111 - xylF MCAODC_06465 0.24 +2.2 1,308,111 - xylF MCAODC_06465 0.24 -0.1 1,308,116 + xylF MCAODC_06465 0.24 +0.2 1,308,119 + xylF MCAODC_06465 0.24 +0.9 1,308,181 - xylF MCAODC_06465 0.31 +0.8 1,308,225 + xylF MCAODC_06465 0.35 +0.3 1,308,226 - xylF MCAODC_06465 0.35 -1.8 1,308,226 - xylF MCAODC_06465 0.35 +1.2 1,308,226 - xylF MCAODC_06465 0.35 -1.8 1,308,245 + xylF MCAODC_06465 0.37 -2.5 1,308,346 + xylF MCAODC_06465 0.47 -0.6 1,308,346 + xylF MCAODC_06465 0.47 +0.3 1,308,347 - xylF MCAODC_06465 0.47 -0.8 1,308,347 - xylF MCAODC_06465 0.47 -3.9 1,308,347 - xylF MCAODC_06465 0.47 +0.2 1,308,386 + xylF MCAODC_06465 0.51 +0.9 1,308,387 - xylF MCAODC_06465 0.51 -0.3 1,308,424 + xylF MCAODC_06465 0.55 +0.8 1,308,425 - xylF MCAODC_06465 0.55 +0.4 1,308,425 - xylF MCAODC_06465 0.55 -2.0 1,308,528 - xylF MCAODC_06465 0.66 +1.0 1,308,535 + xylF MCAODC_06465 0.66 -2.1 1,308,536 - xylF MCAODC_06465 0.66 -0.5 1,308,536 - xylF MCAODC_06465 0.66 +1.7 1,308,581 + xylF MCAODC_06465 0.71 -1.4 1,308,581 + xylF MCAODC_06465 0.71 -2.9 1,308,582 - xylF MCAODC_06465 0.71 +2.0 1,308,691 - xylF MCAODC_06465 0.82 +0.2 1,308,786 + +0.4 1,308,786 + +0.7
Or see this region's nucleotide sequence