Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yiiE and MCAODC_04485 are separated by 693 nucleotides MCAODC_04485 and MCAODC_04490 are separated by 6 nucleotides
MCAODC_04480: yiiE - Uncharacterized protein YiiE, at 908,007 to 908,225
yiiE
MCAODC_04485: MCAODC_04485 - Transposase, at 908,919 to 909,833
_04485
MCAODC_04490: MCAODC_04490 - hypothetical protein, at 909,840 to 910,733
_04490
Position (kb) 908
909
910 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 907.929 kb on - strand at 907.952 kb on - strand at 908.024 kb on + strand at 908.025 kb on - strand at 908.047 kb on - strand, within yiiE at 908.047 kb on - strand, within yiiE at 908.214 kb on - strand at 908.243 kb on + strand at 908.258 kb on + strand at 908.259 kb on - strand at 908.427 kb on - strand at 908.487 kb on - strand at 908.525 kb on - strand at 908.525 kb on - strand at 908.525 kb on - strand at 908.581 kb on - strand at 908.712 kb on + strand at 908.712 kb on + strand at 908.713 kb on - strand at 908.744 kb on + strand at 908.745 kb on - strand at 908.769 kb on + strand at 908.769 kb on + strand at 908.863 kb on - strand at 908.863 kb on - strand at 908.913 kb on + strand at 908.992 kb on - strand at 909.011 kb on + strand, within MCAODC_04485 at 909.113 kb on + strand, within MCAODC_04485 at 909.236 kb on + strand, within MCAODC_04485 at 909.298 kb on - strand, within MCAODC_04485 at 909.300 kb on - strand, within MCAODC_04485 at 909.488 kb on - strand, within MCAODC_04485 at 909.508 kb on + strand, within MCAODC_04485 at 909.509 kb on - strand, within MCAODC_04485 at 909.509 kb on - strand, within MCAODC_04485 at 909.513 kb on + strand, within MCAODC_04485 at 909.513 kb on + strand, within MCAODC_04485 at 909.584 kb on + strand, within MCAODC_04485 at 909.585 kb on - strand, within MCAODC_04485 at 909.585 kb on - strand, within MCAODC_04485 at 909.628 kb on - strand, within MCAODC_04485 at 909.635 kb on + strand, within MCAODC_04485 at 909.636 kb on - strand, within MCAODC_04485 at 909.636 kb on - strand, within MCAODC_04485 at 909.667 kb on - strand, within MCAODC_04485 at 909.717 kb on - strand, within MCAODC_04485 at 909.766 kb on - strand at 909.770 kb on + strand at 909.771 kb on - strand at 909.889 kb on + strand at 909.891 kb on + strand at 909.913 kb on - strand at 910.064 kb on + strand, within MCAODC_04490 at 910.143 kb on - strand, within MCAODC_04490 at 910.214 kb on - strand, within MCAODC_04490 at 910.267 kb on - strand, within MCAODC_04490 at 910.330 kb on - strand, within MCAODC_04490 at 910.341 kb on + strand, within MCAODC_04490 at 910.342 kb on - strand, within MCAODC_04490 at 910.343 kb on + strand, within MCAODC_04490 at 910.363 kb on + strand, within MCAODC_04490 at 910.364 kb on + strand, within MCAODC_04490 at 910.364 kb on + strand, within MCAODC_04490 at 910.454 kb on + strand, within MCAODC_04490 at 910.455 kb on - strand, within MCAODC_04490 at 910.457 kb on - strand, within MCAODC_04490 at 910.458 kb on + strand, within MCAODC_04490 at 910.458 kb on + strand, within MCAODC_04490 at 910.459 kb on - strand, within MCAODC_04490
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 907,929 - +0.6 907,952 - +1.5 908,024 + +0.5 908,025 - +0.4 908,047 - yiiE MCAODC_04480 0.18 +0.7 908,047 - yiiE MCAODC_04480 0.18 -1.3 908,214 - +0.0 908,243 + -0.0 908,258 + +2.2 908,259 - -2.0 908,427 - +0.3 908,487 - +0.1 908,525 - -0.0 908,525 - +0.8 908,525 - -0.3 908,581 - -2.6 908,712 + -1.2 908,712 + -1.0 908,713 - -0.2 908,744 + -0.5 908,745 - -1.6 908,769 + +2.0 908,769 + -0.4 908,863 - -0.4 908,863 - +0.0 908,913 + -0.7 908,992 - -0.4 909,011 + MCAODC_04485 0.10 -0.3 909,113 + MCAODC_04485 0.21 +1.1 909,236 + MCAODC_04485 0.35 -0.8 909,298 - MCAODC_04485 0.41 -0.2 909,300 - MCAODC_04485 0.42 +0.2 909,488 - MCAODC_04485 0.62 -3.0 909,508 + MCAODC_04485 0.64 +0.1 909,509 - MCAODC_04485 0.64 -0.3 909,509 - MCAODC_04485 0.64 +0.0 909,513 + MCAODC_04485 0.65 +0.5 909,513 + MCAODC_04485 0.65 +0.8 909,584 + MCAODC_04485 0.73 -0.4 909,585 - MCAODC_04485 0.73 -0.9 909,585 - MCAODC_04485 0.73 -0.6 909,628 - MCAODC_04485 0.77 +0.6 909,635 + MCAODC_04485 0.78 +0.3 909,636 - MCAODC_04485 0.78 -2.4 909,636 - MCAODC_04485 0.78 -0.8 909,667 - MCAODC_04485 0.82 -2.0 909,717 - MCAODC_04485 0.87 +0.3 909,766 - +0.2 909,770 + -0.9 909,771 - -0.1 909,889 + +1.0 909,891 + -0.8 909,913 - -0.3 910,064 + MCAODC_04490 0.25 +1.1 910,143 - MCAODC_04490 0.34 +2.8 910,214 - MCAODC_04490 0.42 +1.5 910,267 - MCAODC_04490 0.48 +0.4 910,330 - MCAODC_04490 0.55 +1.3 910,341 + MCAODC_04490 0.56 +1.7 910,342 - MCAODC_04490 0.56 +0.4 910,343 + MCAODC_04490 0.56 -1.1 910,363 + MCAODC_04490 0.59 +1.3 910,364 + MCAODC_04490 0.59 -0.5 910,364 + MCAODC_04490 0.59 -0.7 910,454 + MCAODC_04490 0.69 +0.6 910,455 - MCAODC_04490 0.69 +1.0 910,457 - MCAODC_04490 0.69 -1.6 910,458 + MCAODC_04490 0.69 +0.5 910,458 + MCAODC_04490 0.69 -0.9 910,459 - MCAODC_04490 0.69 -0.5
Or see this region's nucleotide sequence