Strain Fitness in Escherichia coli ECRC101 around MCAODC_03540

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_03530 and MCAODC_03535 are separated by 47 nucleotidesMCAODC_03535 and MCAODC_03540 are separated by 196 nucleotidesMCAODC_03540 and MCAODC_03545 are separated by 612 nucleotides MCAODC_03530: MCAODC_03530 - pyocin activator protein PrtN, at 708,613 to 708,894 _03530 MCAODC_03535: MCAODC_03535 - Phage protein, at 708,942 to 709,115 _03535 MCAODC_03540: MCAODC_03540 - hypothetical protein, at 709,312 to 709,845 _03540 MCAODC_03545: MCAODC_03545 - DUF2713 domain-containing protein, at 710,458 to 711,414 _03545 Position (kb) 709 710Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 708.345 kb on - strandat 708.414 kb on - strandat 708.548 kb on + strandat 708.572 kb on + strandat 708.573 kb on - strandat 708.612 kb on + strandat 708.612 kb on + strandat 708.685 kb on + strand, within MCAODC_03530at 708.685 kb on + strand, within MCAODC_03530at 708.686 kb on - strand, within MCAODC_03530at 708.686 kb on - strand, within MCAODC_03530at 708.686 kb on - strand, within MCAODC_03530at 708.693 kb on + strand, within MCAODC_03530at 708.694 kb on - strand, within MCAODC_03530at 708.732 kb on + strand, within MCAODC_03530at 708.732 kb on + strand, within MCAODC_03530at 708.732 kb on + strand, within MCAODC_03530at 708.732 kb on + strand, within MCAODC_03530at 708.733 kb on - strand, within MCAODC_03530at 708.752 kb on - strand, within MCAODC_03530at 708.793 kb on - strand, within MCAODC_03530at 708.811 kb on + strand, within MCAODC_03530at 708.811 kb on + strand, within MCAODC_03530at 708.811 kb on + strand, within MCAODC_03530at 708.811 kb on + strand, within MCAODC_03530at 708.812 kb on - strand, within MCAODC_03530at 708.812 kb on - strand, within MCAODC_03530at 708.812 kb on - strand, within MCAODC_03530at 708.812 kb on - strand, within MCAODC_03530at 708.815 kb on + strand, within MCAODC_03530at 708.840 kb on + strand, within MCAODC_03530at 708.937 kb on + strandat 708.938 kb on - strandat 709.165 kb on - strandat 709.183 kb on - strandat 709.224 kb on - strandat 709.224 kb on - strandat 709.249 kb on - strandat 709.249 kb on - strandat 709.249 kb on - strandat 709.249 kb on - strandat 709.249 kb on - strandat 709.249 kb on - strandat 709.249 kb on - strandat 709.255 kb on - strandat 709.255 kb on - strandat 709.255 kb on - strandat 709.255 kb on - strandat 709.261 kb on - strandat 709.313 kb on + strandat 709.314 kb on - strandat 709.327 kb on - strandat 709.370 kb on + strand, within MCAODC_03540at 709.406 kb on + strand, within MCAODC_03540at 709.407 kb on - strand, within MCAODC_03540at 709.410 kb on - strand, within MCAODC_03540at 709.410 kb on - strand, within MCAODC_03540at 709.410 kb on - strand, within MCAODC_03540at 709.452 kb on + strand, within MCAODC_03540at 709.453 kb on - strand, within MCAODC_03540at 709.453 kb on - strand, within MCAODC_03540at 709.453 kb on - strand, within MCAODC_03540at 709.468 kb on - strand, within MCAODC_03540at 709.468 kb on - strand, within MCAODC_03540at 709.475 kb on - strand, within MCAODC_03540at 709.476 kb on + strand, within MCAODC_03540at 709.489 kb on - strand, within MCAODC_03540at 709.489 kb on - strand, within MCAODC_03540at 709.498 kb on + strand, within MCAODC_03540at 709.557 kb on + strand, within MCAODC_03540at 709.557 kb on + strand, within MCAODC_03540at 709.557 kb on + strand, within MCAODC_03540at 709.558 kb on - strand, within MCAODC_03540at 709.558 kb on - strand, within MCAODC_03540at 709.661 kb on + strand, within MCAODC_03540at 709.662 kb on - strand, within MCAODC_03540at 709.682 kb on + strand, within MCAODC_03540at 709.686 kb on + strand, within MCAODC_03540at 709.686 kb on + strand, within MCAODC_03540at 709.686 kb on + strand, within MCAODC_03540at 709.686 kb on + strand, within MCAODC_03540at 709.686 kb on + strand, within MCAODC_03540at 709.686 kb on + strand, within MCAODC_03540at 709.686 kb on + strand, within MCAODC_03540at 709.686 kb on + strand, within MCAODC_03540at 709.687 kb on - strand, within MCAODC_03540at 709.687 kb on - strand, within MCAODC_03540at 709.687 kb on - strand, within MCAODC_03540at 709.687 kb on - strand, within MCAODC_03540at 709.687 kb on - strand, within MCAODC_03540at 709.687 kb on - strand, within MCAODC_03540at 709.687 kb on - strand, within MCAODC_03540at 709.687 kb on - strand, within MCAODC_03540at 709.690 kb on + strand, within MCAODC_03540at 709.690 kb on + strand, within MCAODC_03540at 709.691 kb on - strand, within MCAODC_03540at 709.691 kb on - strand, within MCAODC_03540at 709.697 kb on + strand, within MCAODC_03540at 709.698 kb on - strand, within MCAODC_03540at 709.698 kb on - strand, within MCAODC_03540at 709.739 kb on + strand, within MCAODC_03540at 709.740 kb on - strand, within MCAODC_03540at 709.740 kb on - strand, within MCAODC_03540at 709.774 kb on + strand, within MCAODC_03540at 709.775 kb on - strand, within MCAODC_03540at 709.803 kb on + strandat 709.809 kb on + strandat 709.810 kb on - strandat 709.810 kb on - strandat 709.810 kb on - strandat 709.814 kb on - strandat 709.825 kb on + strandat 709.825 kb on + strandat 709.825 kb on + strandat 709.869 kb on - strandat 709.869 kb on - strandat 709.880 kb on + strandat 709.880 kb on + strandat 709.880 kb on + strandat 709.880 kb on + strandat 709.880 kb on + strandat 709.881 kb on - strandat 709.881 kb on - strandat 709.881 kb on - strandat 709.881 kb on - strandat 709.881 kb on - strandat 709.881 kb on - strandat 709.881 kb on - strandat 709.882 kb on + strandat 709.882 kb on + strandat 709.909 kb on + strandat 709.910 kb on - strandat 709.956 kb on + strandat 709.957 kb on - strandat 709.958 kb on + strandat 709.960 kb on + strandat 709.984 kb on + strandat 710.182 kb on + strandat 710.182 kb on + strandat 710.183 kb on - strandat 710.183 kb on - strandat 710.183 kb on - strandat 710.183 kb on - strandat 710.183 kb on - strandat 710.183 kb on - strandat 710.183 kb on - strandat 710.183 kb on - strandat 710.184 kb on + strandat 710.190 kb on - strandat 710.265 kb on + strandat 710.269 kb on + strandat 710.269 kb on + strandat 710.269 kb on + strandat 710.270 kb on - strandat 710.270 kb on - strandat 710.276 kb on - strandat 710.359 kb on - strandat 710.601 kb on + strand, within MCAODC_03545at 710.644 kb on - strand, within MCAODC_03545at 710.652 kb on - strand, within MCAODC_03545at 710.705 kb on + strand, within MCAODC_03545at 710.715 kb on + strand, within MCAODC_03545

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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708,345 - -0.3
708,414 - +1.5
708,548 + -1.1
708,572 + -1.1
708,573 - -0.7
708,612 + -0.8
708,612 + -0.3
708,685 + MCAODC_03530 0.26 +0.6
708,685 + MCAODC_03530 0.26 +0.7
708,686 - MCAODC_03530 0.26 -1.1
708,686 - MCAODC_03530 0.26 +0.3
708,686 - MCAODC_03530 0.26 -0.4
708,693 + MCAODC_03530 0.28 -3.0
708,694 - MCAODC_03530 0.29 -0.2
708,732 + MCAODC_03530 0.42 -1.1
708,732 + MCAODC_03530 0.42 +0.2
708,732 + MCAODC_03530 0.42 -1.5
708,732 + MCAODC_03530 0.42 -2.9
708,733 - MCAODC_03530 0.43 -0.3
708,752 - MCAODC_03530 0.49 +0.6
708,793 - MCAODC_03530 0.64 +0.4
708,811 + MCAODC_03530 0.70 +0.3
708,811 + MCAODC_03530 0.70 +0.1
708,811 + MCAODC_03530 0.70 -0.1
708,811 + MCAODC_03530 0.70 +0.3
708,812 - MCAODC_03530 0.71 -3.3
708,812 - MCAODC_03530 0.71 +0.6
708,812 - MCAODC_03530 0.71 +0.0
708,812 - MCAODC_03530 0.71 -1.0
708,815 + MCAODC_03530 0.72 -0.0
708,840 + MCAODC_03530 0.80 -3.8
708,937 + +0.0
708,938 - +1.3
709,165 - -3.8
709,183 - +0.6
709,224 - -0.3
709,224 - -1.0
709,249 - +0.4
709,249 - -0.8
709,249 - -0.0
709,249 - +0.9
709,249 - -0.6
709,249 - -0.8
709,249 - -0.2
709,255 - +0.6
709,255 - +1.4
709,255 - +1.4
709,255 - +0.7
709,261 - +1.4
709,313 + +0.2
709,314 - +2.1
709,327 - -1.0
709,370 + MCAODC_03540 0.11 +0.7
709,406 + MCAODC_03540 0.18 -0.2
709,407 - MCAODC_03540 0.18 +0.0
709,410 - MCAODC_03540 0.18 +1.2
709,410 - MCAODC_03540 0.18 -0.0
709,410 - MCAODC_03540 0.18 +1.0
709,452 + MCAODC_03540 0.26 +1.2
709,453 - MCAODC_03540 0.26 -0.0
709,453 - MCAODC_03540 0.26 +1.4
709,453 - MCAODC_03540 0.26 +0.0
709,468 - MCAODC_03540 0.29 -0.3
709,468 - MCAODC_03540 0.29 -1.6
709,475 - MCAODC_03540 0.31 +0.2
709,476 + MCAODC_03540 0.31 -1.5
709,489 - MCAODC_03540 0.33 +0.4
709,489 - MCAODC_03540 0.33 +1.6
709,498 + MCAODC_03540 0.35 -1.3
709,557 + MCAODC_03540 0.46 +1.2
709,557 + MCAODC_03540 0.46 +1.3
709,557 + MCAODC_03540 0.46 +0.7
709,558 - MCAODC_03540 0.46 -0.2
709,558 - MCAODC_03540 0.46 -0.0
709,661 + MCAODC_03540 0.65 -0.8
709,662 - MCAODC_03540 0.66 -0.4
709,682 + MCAODC_03540 0.69 -1.5
709,686 + MCAODC_03540 0.70 +2.1
709,686 + MCAODC_03540 0.70 +1.9
709,686 + MCAODC_03540 0.70 +0.5
709,686 + MCAODC_03540 0.70 -2.6
709,686 + MCAODC_03540 0.70 -0.2
709,686 + MCAODC_03540 0.70 +0.1
709,686 + MCAODC_03540 0.70 +0.1
709,686 + MCAODC_03540 0.70 -3.0
709,687 - MCAODC_03540 0.70 +0.3
709,687 - MCAODC_03540 0.70 +1.0
709,687 - MCAODC_03540 0.70 +0.6
709,687 - MCAODC_03540 0.70 +0.3
709,687 - MCAODC_03540 0.70 -1.6
709,687 - MCAODC_03540 0.70 +0.5
709,687 - MCAODC_03540 0.70 -3.7
709,687 - MCAODC_03540 0.70 -0.9
709,690 + MCAODC_03540 0.71 -1.3
709,690 + MCAODC_03540 0.71 -0.9
709,691 - MCAODC_03540 0.71 -0.2
709,691 - MCAODC_03540 0.71 +2.2
709,697 + MCAODC_03540 0.72 -0.0
709,698 - MCAODC_03540 0.72 -1.0
709,698 - MCAODC_03540 0.72 +0.1
709,739 + MCAODC_03540 0.80 +1.1
709,740 - MCAODC_03540 0.80 +0.9
709,740 - MCAODC_03540 0.80 +1.9
709,774 + MCAODC_03540 0.87 +0.6
709,775 - MCAODC_03540 0.87 +1.4
709,803 + +0.1
709,809 + +0.8
709,810 - -3.0
709,810 - -0.2
709,810 - -0.1
709,814 - +0.9
709,825 + -2.0
709,825 + +0.1
709,825 + -2.6
709,869 - +0.0
709,869 - -0.2
709,880 + +0.6
709,880 + +0.4
709,880 + +2.5
709,880 + +1.4
709,880 + -1.1
709,881 - +0.7
709,881 - -1.7
709,881 - -3.1
709,881 - -4.2
709,881 - -1.5
709,881 - +0.3
709,881 - +3.7
709,882 + -1.8
709,882 + -0.1
709,909 + +1.0
709,910 - +1.0
709,956 + +0.3
709,957 - -1.5
709,958 + +0.2
709,960 + +1.3
709,984 + +2.1
710,182 + +0.6
710,182 + +0.1
710,183 - +0.9
710,183 - +0.4
710,183 - -0.7
710,183 - +0.4
710,183 - +0.6
710,183 - -1.1
710,183 - +0.1
710,183 - +1.2
710,184 + +0.4
710,190 - +0.0
710,265 + -1.1
710,269 + -0.2
710,269 + +0.9
710,269 + +1.2
710,270 - +0.7
710,270 - +0.3
710,276 - +0.2
710,359 - +0.5
710,601 + MCAODC_03545 0.15 -1.7
710,644 - MCAODC_03545 0.19 +1.3
710,652 - MCAODC_03545 0.20 +0.4
710,705 + MCAODC_03545 0.26 -1.0
710,715 + MCAODC_03545 0.27 -0.7

Or see this region's nucleotide sequence