Strain Fitness in Escherichia coli ECRC101 around MCAODC_03495

Experiment: Control_ECRC101_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_03490 and lomR are separated by 64 nucleotideslomR and MCAODC_03500 are separated by 67 nucleotidesMCAODC_03500 and MCAODC_03505 are separated by 86 nucleotides MCAODC_03490: MCAODC_03490 - phage tail protein, at 703,278 to 704,591 _03490 MCAODC_03495: lomR - Ail/Lom family protein, at 704,656 to 705,255 lomR MCAODC_03500: MCAODC_03500 - phage tail protein, at 705,323 to 705,976 _03500 MCAODC_03505: MCAODC_03505 - CPS-53 (KpLE1) prophage protein, at 706,063 to 706,449 _03505 Position (kb) 704 705 706Strain fitness (log2 ratio) -1 0 1at 704.185 kb on - strand, within MCAODC_03490at 705.382 kb on + strandat 705.562 kb on + strand, within MCAODC_03500at 705.562 kb on + strand, within MCAODC_03500at 705.562 kb on + strand, within MCAODC_03500at 705.562 kb on + strand, within MCAODC_03500at 705.568 kb on + strand, within MCAODC_03500at 706.057 kb on + strandat 706.057 kb on + strandat 706.078 kb on - strandat 706.165 kb on - strand, within MCAODC_03505at 706.225 kb on - strand, within MCAODC_03505

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
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704,185 - MCAODC_03490 0.69 -0.8
705,382 + -0.4
705,562 + MCAODC_03500 0.37 +0.6
705,562 + MCAODC_03500 0.37 -0.7
705,562 + MCAODC_03500 0.37 -0.2
705,562 + MCAODC_03500 0.37 +1.3
705,568 + MCAODC_03500 0.37 +0.2
706,057 + +0.5
706,057 + +0.2
706,078 - +0.5
706,165 - MCAODC_03505 0.26 +0.3
706,225 - MCAODC_03505 0.42 -0.2

Or see this region's nucleotide sequence