Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaK and yaaI are separated by 376 nucleotides yaaI and msyB are separated by 25 nucleotides msyB and satP are separated by 148 nucleotides
MCAODC_01570: dnaK - molecular chaperone DnaK, at 303,094 to 305,010
dnaK
MCAODC_01575: yaaI - DUF2541 domain-containing protein, at 305,387 to 305,791
yaaI
MCAODC_01580: msyB - acidic protein MsyB, at 305,817 to 306,530
msyB
MCAODC_01585: satP - acetate uptake transporter, at 306,679 to 307,245
satP
Position (kb) 305
306 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 305.059 kb on - strand at 305.059 kb on - strand at 305.129 kb on + strand at 305.132 kb on + strand at 305.132 kb on + strand at 305.132 kb on + strand at 305.132 kb on + strand at 305.132 kb on + strand at 305.132 kb on + strand at 305.133 kb on - strand at 305.133 kb on - strand at 305.249 kb on - strand at 305.249 kb on - strand at 305.249 kb on - strand at 305.250 kb on + strand at 305.250 kb on + strand at 305.251 kb on - strand at 305.337 kb on + strand at 305.374 kb on + strand at 305.464 kb on + strand, within yaaI at 305.464 kb on + strand, within yaaI at 305.464 kb on + strand, within yaaI at 305.465 kb on - strand, within yaaI at 305.465 kb on - strand, within yaaI at 305.550 kb on + strand, within yaaI at 305.550 kb on + strand, within yaaI at 305.551 kb on - strand, within yaaI at 305.551 kb on - strand, within yaaI at 305.551 kb on - strand, within yaaI at 305.551 kb on - strand, within yaaI at 305.577 kb on + strand, within yaaI at 305.584 kb on - strand, within yaaI at 305.584 kb on - strand, within yaaI at 305.638 kb on + strand, within yaaI at 305.652 kb on + strand, within yaaI at 305.740 kb on + strand, within yaaI at 305.800 kb on + strand at 305.801 kb on - strand at 305.802 kb on + strand at 305.802 kb on + strand at 305.802 kb on + strand at 305.803 kb on - strand at 305.803 kb on - strand at 305.830 kb on - strand at 305.867 kb on + strand at 305.867 kb on + strand at 305.867 kb on + strand at 305.867 kb on + strand at 305.868 kb on - strand at 305.868 kb on - strand at 305.868 kb on - strand at 305.868 kb on - strand at 305.881 kb on + strand at 306.025 kb on + strand, within msyB at 306.025 kb on + strand, within msyB at 306.044 kb on + strand, within msyB at 306.075 kb on - strand, within msyB at 306.081 kb on + strand, within msyB at 306.082 kb on - strand, within msyB at 306.143 kb on + strand, within msyB at 306.144 kb on - strand, within msyB at 306.167 kb on - strand, within msyB at 306.185 kb on + strand, within msyB at 306.188 kb on + strand, within msyB at 306.188 kb on + strand, within msyB at 306.188 kb on + strand, within msyB at 306.189 kb on - strand, within msyB at 306.215 kb on + strand, within msyB at 306.215 kb on + strand, within msyB at 306.216 kb on - strand, within msyB at 306.216 kb on - strand, within msyB at 306.216 kb on - strand, within msyB at 306.346 kb on + strand, within msyB at 306.346 kb on + strand, within msyB at 306.347 kb on - strand, within msyB at 306.347 kb on - strand, within msyB at 306.370 kb on + strand, within msyB at 306.370 kb on + strand, within msyB at 306.415 kb on + strand, within msyB at 306.459 kb on + strand at 306.576 kb on - strand at 306.576 kb on - strand at 306.598 kb on + strand at 306.598 kb on + strand at 306.599 kb on - strand at 306.601 kb on + strand at 306.601 kb on + strand at 306.601 kb on + strand at 306.623 kb on - strand at 306.678 kb on + strand at 306.678 kb on + strand at 306.679 kb on - strand at 306.690 kb on + strand at 306.690 kb on + strand at 306.690 kb on + strand at 306.691 kb on - strand at 306.691 kb on - strand at 306.691 kb on - strand at 306.691 kb on - strand at 306.764 kb on + strand, within satP at 306.764 kb on + strand, within satP at 306.764 kb on + strand, within satP at 306.764 kb on + strand, within satP at 306.764 kb on + strand, within satP at 306.764 kb on + strand, within satP at 306.765 kb on - strand, within satP at 306.770 kb on - strand, within satP at 306.770 kb on - strand, within satP at 306.770 kb on - strand, within satP at 306.787 kb on - strand, within satP at 306.787 kb on - strand, within satP at 306.789 kb on + strand, within satP at 306.789 kb on + strand, within satP at 306.790 kb on - strand, within satP at 306.790 kb on - strand, within satP
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 305,059 - +0.3 305,059 - +0.3 305,129 + -1.3 305,132 + +0.3 305,132 + +1.0 305,132 + -0.1 305,132 + +0.3 305,132 + -4.4 305,132 + +1.7 305,133 - -0.1 305,133 - +1.0 305,249 - +0.5 305,249 - +0.5 305,249 - -0.5 305,250 + +0.7 305,250 + +0.4 305,251 - +0.3 305,337 + +0.5 305,374 + +0.8 305,464 + yaaI MCAODC_01575 0.19 -0.1 305,464 + yaaI MCAODC_01575 0.19 -0.7 305,464 + yaaI MCAODC_01575 0.19 -1.1 305,465 - yaaI MCAODC_01575 0.19 +1.2 305,465 - yaaI MCAODC_01575 0.19 -0.1 305,550 + yaaI MCAODC_01575 0.40 +0.5 305,550 + yaaI MCAODC_01575 0.40 +0.2 305,551 - yaaI MCAODC_01575 0.40 +0.2 305,551 - yaaI MCAODC_01575 0.40 +1.7 305,551 - yaaI MCAODC_01575 0.40 -0.2 305,551 - yaaI MCAODC_01575 0.40 -1.0 305,577 + yaaI MCAODC_01575 0.47 -0.3 305,584 - yaaI MCAODC_01575 0.49 -1.7 305,584 - yaaI MCAODC_01575 0.49 -1.6 305,638 + yaaI MCAODC_01575 0.62 +1.3 305,652 + yaaI MCAODC_01575 0.65 +1.1 305,740 + yaaI MCAODC_01575 0.87 -0.1 305,800 + +0.8 305,801 - -0.7 305,802 + -0.3 305,802 + +0.4 305,802 + -0.3 305,803 - +0.7 305,803 - -1.8 305,830 - +1.0 305,867 + +0.8 305,867 + -1.4 305,867 + -0.9 305,867 + -0.5 305,868 - +2.5 305,868 - +0.5 305,868 - -1.7 305,868 - +0.8 305,881 + -0.3 306,025 + msyB MCAODC_01580 0.29 +0.0 306,025 + msyB MCAODC_01580 0.29 -0.5 306,044 + msyB MCAODC_01580 0.32 -2.3 306,075 - msyB MCAODC_01580 0.36 -1.8 306,081 + msyB MCAODC_01580 0.37 +0.4 306,082 - msyB MCAODC_01580 0.37 +0.5 306,143 + msyB MCAODC_01580 0.46 +0.2 306,144 - msyB MCAODC_01580 0.46 -1.2 306,167 - msyB MCAODC_01580 0.49 -1.0 306,185 + msyB MCAODC_01580 0.52 +1.0 306,188 + msyB MCAODC_01580 0.52 -1.1 306,188 + msyB MCAODC_01580 0.52 -0.9 306,188 + msyB MCAODC_01580 0.52 +0.6 306,189 - msyB MCAODC_01580 0.52 -1.4 306,215 + msyB MCAODC_01580 0.56 +0.1 306,215 + msyB MCAODC_01580 0.56 +2.0 306,216 - msyB MCAODC_01580 0.56 -0.2 306,216 - msyB MCAODC_01580 0.56 -1.8 306,216 - msyB MCAODC_01580 0.56 -0.3 306,346 + msyB MCAODC_01580 0.74 +0.5 306,346 + msyB MCAODC_01580 0.74 +0.7 306,347 - msyB MCAODC_01580 0.74 +0.2 306,347 - msyB MCAODC_01580 0.74 +1.3 306,370 + msyB MCAODC_01580 0.77 +0.2 306,370 + msyB MCAODC_01580 0.77 -0.1 306,415 + msyB MCAODC_01580 0.84 +0.7 306,459 + +0.4 306,576 - -1.3 306,576 - +0.8 306,598 + -0.7 306,598 + +1.5 306,599 - +0.6 306,601 + -2.5 306,601 + -0.1 306,601 + -1.4 306,623 - -3.3 306,678 + +1.6 306,678 + +0.7 306,679 - -0.1 306,690 + +0.9 306,690 + +0.0 306,690 + +0.1 306,691 - -2.3 306,691 - +1.6 306,691 - +1.6 306,691 - -0.3 306,764 + satP MCAODC_01585 0.15 +1.0 306,764 + satP MCAODC_01585 0.15 -2.0 306,764 + satP MCAODC_01585 0.15 +0.7 306,764 + satP MCAODC_01585 0.15 +0.4 306,764 + satP MCAODC_01585 0.15 -2.5 306,764 + satP MCAODC_01585 0.15 -0.7 306,765 - satP MCAODC_01585 0.15 +1.8 306,770 - satP MCAODC_01585 0.16 -0.8 306,770 - satP MCAODC_01585 0.16 +0.2 306,770 - satP MCAODC_01585 0.16 -0.1 306,787 - satP MCAODC_01585 0.19 -0.2 306,787 - satP MCAODC_01585 0.19 +0.4 306,789 + satP MCAODC_01585 0.19 +0.9 306,789 + satP MCAODC_01585 0.19 +0.3 306,790 - satP MCAODC_01585 0.20 +0.9 306,790 - satP MCAODC_01585 0.20 -1.5
Or see this region's nucleotide sequence