Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yaaU and fixX are separated by 57 nucleotides fixX and fixX overlap by 4 nucleotides fixX and fixB are separated by 50 nucleotides
MCAODC_01390: yaaU - Putative metabolite transport protein YaaU, at 265,643 to 266,974
yaaU
MCAODC_01395: fixX - ferredoxin-like protein FixX, at 267,032 to 267,319
fixX
MCAODC_01400: fixX - ferredoxin-like protein FixX, at 267,316 to 268,602
fixX
MCAODC_01405: fixB - electron transfer flavoprotein subunit alpha/FixB family protein, at 268,653 to 269,594
fixB
Position (kb) 267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 266.358 kb on - strand, within yaaU at 266.358 kb on - strand, within yaaU at 266.373 kb on - strand, within yaaU at 266.375 kb on + strand, within yaaU at 266.375 kb on + strand, within yaaU at 266.376 kb on - strand, within yaaU at 266.478 kb on + strand, within yaaU at 266.478 kb on + strand, within yaaU at 266.479 kb on - strand, within yaaU at 266.479 kb on - strand, within yaaU at 266.520 kb on + strand, within yaaU at 266.521 kb on - strand, within yaaU at 266.629 kb on + strand, within yaaU at 266.629 kb on + strand, within yaaU at 266.707 kb on + strand, within yaaU at 266.708 kb on - strand, within yaaU at 266.751 kb on + strand, within yaaU at 266.870 kb on + strand at 266.876 kb on + strand at 266.877 kb on - strand at 266.877 kb on - strand at 266.877 kb on - strand at 266.878 kb on + strand at 266.878 kb on + strand at 266.878 kb on + strand at 266.878 kb on + strand at 266.878 kb on + strand at 266.878 kb on + strand at 266.879 kb on - strand at 266.879 kb on - strand at 266.879 kb on - strand at 266.879 kb on - strand at 266.879 kb on - strand at 266.879 kb on - strand at 266.879 kb on - strand at 266.880 kb on + strand at 266.880 kb on + strand at 266.880 kb on + strand at 266.881 kb on - strand at 266.881 kb on - strand at 266.881 kb on - strand at 266.881 kb on - strand at 266.881 kb on - strand at 266.979 kb on + strand at 267.015 kb on + strand at 267.019 kb on + strand at 267.177 kb on + strand, within fixX at 267.177 kb on + strand, within fixX at 267.177 kb on + strand, within fixX at 267.178 kb on - strand, within fixX at 267.178 kb on - strand, within fixX at 267.178 kb on - strand, within fixX at 267.178 kb on - strand, within fixX at 267.178 kb on - strand, within fixX at 267.224 kb on - strand, within fixX at 267.277 kb on + strand, within fixX at 267.277 kb on + strand, within fixX at 267.277 kb on + strand, within fixX at 267.515 kb on + strand, within fixX at 267.519 kb on + strand, within fixX at 267.519 kb on + strand, within fixX at 267.519 kb on + strand, within fixX at 267.520 kb on - strand, within fixX at 267.520 kb on - strand, within fixX at 267.520 kb on - strand, within fixX at 267.520 kb on - strand, within fixX at 267.520 kb on - strand, within fixX at 267.520 kb on - strand, within fixX at 267.520 kb on - strand, within fixX at 267.520 kb on - strand, within fixX at 267.681 kb on + strand, within fixX at 267.681 kb on + strand, within fixX at 267.681 kb on + strand, within fixX at 267.681 kb on + strand, within fixX at 267.764 kb on - strand, within fixX at 267.776 kb on + strand, within fixX at 267.921 kb on + strand, within fixX at 267.921 kb on + strand, within fixX at 267.922 kb on - strand, within fixX at 267.923 kb on + strand, within fixX at 267.923 kb on + strand, within fixX at 267.924 kb on - strand, within fixX at 267.970 kb on + strand, within fixX at 267.970 kb on + strand, within fixX at 267.970 kb on + strand, within fixX at 267.991 kb on - strand, within fixX at 268.171 kb on + strand, within fixX at 268.171 kb on + strand, within fixX at 268.228 kb on + strand, within fixX at 268.229 kb on - strand, within fixX at 268.229 kb on - strand, within fixX at 268.229 kb on - strand, within fixX at 268.295 kb on + strand, within fixX at 268.296 kb on - strand, within fixX at 268.296 kb on - strand, within fixX at 268.334 kb on + strand, within fixX at 268.335 kb on - strand, within fixX at 268.341 kb on + strand, within fixX at 268.342 kb on - strand, within fixX at 268.452 kb on - strand, within fixX at 268.507 kb on + strand at 268.507 kb on + strand at 268.508 kb on - strand at 268.590 kb on + strand at 268.591 kb on - strand at 268.602 kb on + strand at 268.602 kb on + strand at 268.602 kb on + strand at 268.603 kb on - strand at 268.662 kb on + strand at 268.714 kb on + strand at 268.724 kb on - strand at 268.751 kb on + strand, within fixB at 268.824 kb on + strand, within fixB at 268.824 kb on + strand, within fixB at 268.824 kb on + strand, within fixB at 268.824 kb on + strand, within fixB at 268.825 kb on - strand, within fixB at 268.825 kb on - strand, within fixB at 268.825 kb on - strand, within fixB at 268.828 kb on + strand, within fixB at 268.859 kb on + strand, within fixB at 268.867 kb on + strand, within fixB at 268.867 kb on + strand, within fixB at 268.867 kb on + strand, within fixB at 268.868 kb on - strand, within fixB at 268.868 kb on - strand, within fixB at 268.868 kb on - strand, within fixB at 268.932 kb on + strand, within fixB at 268.932 kb on + strand, within fixB at 269.247 kb on + strand, within fixB at 269.247 kb on + strand, within fixB at 269.270 kb on + strand, within fixB at 269.313 kb on + strand, within fixB at 269.313 kb on + strand, within fixB at 269.314 kb on - strand, within fixB at 269.373 kb on - strand, within fixB at 269.431 kb on - strand, within fixB at 269.431 kb on - strand, within fixB at 269.510 kb on + strand at 269.511 kb on - strand at 269.594 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 266,358 - yaaU MCAODC_01390 0.54 -0.1 266,358 - yaaU MCAODC_01390 0.54 +1.0 266,373 - yaaU MCAODC_01390 0.55 +0.1 266,375 + yaaU MCAODC_01390 0.55 +0.2 266,375 + yaaU MCAODC_01390 0.55 -0.6 266,376 - yaaU MCAODC_01390 0.55 -2.7 266,478 + yaaU MCAODC_01390 0.63 +0.2 266,478 + yaaU MCAODC_01390 0.63 -1.3 266,479 - yaaU MCAODC_01390 0.63 -0.7 266,479 - yaaU MCAODC_01390 0.63 +1.1 266,520 + yaaU MCAODC_01390 0.66 +0.8 266,521 - yaaU MCAODC_01390 0.66 +0.7 266,629 + yaaU MCAODC_01390 0.74 -2.1 266,629 + yaaU MCAODC_01390 0.74 -1.5 266,707 + yaaU MCAODC_01390 0.80 +1.5 266,708 - yaaU MCAODC_01390 0.80 -2.1 266,751 + yaaU MCAODC_01390 0.83 -1.6 266,870 + +0.1 266,876 + -0.5 266,877 - -0.3 266,877 - +0.1 266,877 - +0.0 266,878 + -0.5 266,878 + +0.6 266,878 + -2.1 266,878 + -0.6 266,878 + +0.9 266,878 + +0.2 266,879 - +1.3 266,879 - +0.2 266,879 - -1.2 266,879 - +1.5 266,879 - -0.3 266,879 - -0.9 266,879 - -0.1 266,880 + -2.0 266,880 + -0.4 266,880 + -0.9 266,881 - -0.6 266,881 - -2.0 266,881 - -2.1 266,881 - +0.1 266,881 - +0.3 266,979 + +0.4 267,015 + -1.1 267,019 + +0.3 267,177 + fixX MCAODC_01395 0.50 -2.5 267,177 + fixX MCAODC_01395 0.50 +0.0 267,177 + fixX MCAODC_01395 0.50 +0.8 267,178 - fixX MCAODC_01395 0.51 +0.6 267,178 - fixX MCAODC_01395 0.51 -0.3 267,178 - fixX MCAODC_01395 0.51 -1.5 267,178 - fixX MCAODC_01395 0.51 -0.9 267,178 - fixX MCAODC_01395 0.51 -3.3 267,224 - fixX MCAODC_01395 0.67 +0.1 267,277 + fixX MCAODC_01395 0.85 +1.1 267,277 + fixX MCAODC_01395 0.85 -2.6 267,277 + fixX MCAODC_01395 0.85 +0.5 267,515 + fixX MCAODC_01400 0.15 +0.7 267,519 + fixX MCAODC_01400 0.16 +0.7 267,519 + fixX MCAODC_01400 0.16 -1.6 267,519 + fixX MCAODC_01400 0.16 -0.0 267,520 - fixX MCAODC_01400 0.16 -0.0 267,520 - fixX MCAODC_01400 0.16 -0.0 267,520 - fixX MCAODC_01400 0.16 -0.4 267,520 - fixX MCAODC_01400 0.16 -3.3 267,520 - fixX MCAODC_01400 0.16 +0.6 267,520 - fixX MCAODC_01400 0.16 +0.7 267,520 - fixX MCAODC_01400 0.16 -2.1 267,520 - fixX MCAODC_01400 0.16 +0.2 267,681 + fixX MCAODC_01400 0.28 -0.9 267,681 + fixX MCAODC_01400 0.28 +0.9 267,681 + fixX MCAODC_01400 0.28 -0.3 267,681 + fixX MCAODC_01400 0.28 -1.3 267,764 - fixX MCAODC_01400 0.35 +1.1 267,776 + fixX MCAODC_01400 0.36 +1.5 267,921 + fixX MCAODC_01400 0.47 -0.3 267,921 + fixX MCAODC_01400 0.47 +0.5 267,922 - fixX MCAODC_01400 0.47 -0.1 267,923 + fixX MCAODC_01400 0.47 -0.4 267,923 + fixX MCAODC_01400 0.47 +0.7 267,924 - fixX MCAODC_01400 0.47 +1.1 267,970 + fixX MCAODC_01400 0.51 -0.8 267,970 + fixX MCAODC_01400 0.51 -0.9 267,970 + fixX MCAODC_01400 0.51 +0.4 267,991 - fixX MCAODC_01400 0.52 +0.5 268,171 + fixX MCAODC_01400 0.66 +3.4 268,171 + fixX MCAODC_01400 0.66 -0.1 268,228 + fixX MCAODC_01400 0.71 -2.1 268,229 - fixX MCAODC_01400 0.71 -0.1 268,229 - fixX MCAODC_01400 0.71 -0.5 268,229 - fixX MCAODC_01400 0.71 +0.6 268,295 + fixX MCAODC_01400 0.76 -0.1 268,296 - fixX MCAODC_01400 0.76 -0.2 268,296 - fixX MCAODC_01400 0.76 +0.8 268,334 + fixX MCAODC_01400 0.79 +0.1 268,335 - fixX MCAODC_01400 0.79 +0.7 268,341 + fixX MCAODC_01400 0.80 +0.7 268,342 - fixX MCAODC_01400 0.80 -0.1 268,452 - fixX MCAODC_01400 0.88 +1.3 268,507 + -1.8 268,507 + +0.1 268,508 - +0.5 268,590 + -0.1 268,591 - +0.3 268,602 + -1.2 268,602 + +0.0 268,602 + +0.7 268,603 - +3.1 268,662 + -0.3 268,714 + +1.9 268,724 - +0.5 268,751 + fixB MCAODC_01405 0.10 +0.8 268,824 + fixB MCAODC_01405 0.18 -0.3 268,824 + fixB MCAODC_01405 0.18 +0.2 268,824 + fixB MCAODC_01405 0.18 +0.3 268,824 + fixB MCAODC_01405 0.18 -0.4 268,825 - fixB MCAODC_01405 0.18 +0.2 268,825 - fixB MCAODC_01405 0.18 +0.2 268,825 - fixB MCAODC_01405 0.18 -0.2 268,828 + fixB MCAODC_01405 0.19 +1.3 268,859 + fixB MCAODC_01405 0.22 +1.9 268,867 + fixB MCAODC_01405 0.23 -3.4 268,867 + fixB MCAODC_01405 0.23 -3.5 268,867 + fixB MCAODC_01405 0.23 -1.1 268,868 - fixB MCAODC_01405 0.23 -0.4 268,868 - fixB MCAODC_01405 0.23 -1.5 268,868 - fixB MCAODC_01405 0.23 -0.3 268,932 + fixB MCAODC_01405 0.30 +0.3 268,932 + fixB MCAODC_01405 0.30 -0.1 269,247 + fixB MCAODC_01405 0.63 +1.2 269,247 + fixB MCAODC_01405 0.63 +0.5 269,270 + fixB MCAODC_01405 0.65 +0.9 269,313 + fixB MCAODC_01405 0.70 -0.4 269,313 + fixB MCAODC_01405 0.70 +1.6 269,314 - fixB MCAODC_01405 0.70 -0.0 269,373 - fixB MCAODC_01405 0.76 -0.2 269,431 - fixB MCAODC_01405 0.83 +0.1 269,431 - fixB MCAODC_01405 0.83 +0.1 269,510 + -0.6 269,511 - -1.3 269,594 + +1.3
Or see this region's nucleotide sequence