Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06790

Experiment: beta-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	beta-Cyclodextrin 2.5 mg/ml (C)
1,882,561	+		ABI39_RS06780	0.41	+0.1
1,882,562	-		ABI39_RS06780	0.41	-1.7
1,882,588	-		ABI39_RS06780	0.44	+0.9
1,882,596	-		ABI39_RS06780	0.45	+0.5
1,882,714	-		ABI39_RS06780	0.58	+0.5
1,882,716	-		ABI39_RS06780	0.58	-1.5
1,882,863	+		ABI39_RS06780	0.75	-0.9
1,882,864	-		ABI39_RS06780	0.75	-0.1
1,883,017	+				+0.4
1,883,056	-				-0.6
1,883,094	+				-1.6
1,883,127	-				+0.2
1,883,162	+				-0.5
1,883,163	-				+0.6
1,883,203	-				+0.3
1,883,439	+		ABI39_RS06785	0.72	+0.4
1,883,440	-		ABI39_RS06785	0.72	-0.8
1,883,530	-				+0.1
1,883,630	-				+0.0
1,883,734	-		ABI39_RS06790	0.11	-1.3
1,883,752	-		ABI39_RS06790	0.12	+0.5
1,883,845	-		ABI39_RS06790	0.17	-0.2
1,883,868	-		ABI39_RS06790	0.19	-0.8
1,883,870	-		ABI39_RS06790	0.19	-1.1
1,883,870	-		ABI39_RS06790	0.19	-0.8
1,884,052	-		ABI39_RS06790	0.29	-0.9
1,884,130	-		ABI39_RS06790	0.33	-0.2
1,884,130	-		ABI39_RS06790	0.33	-1.2
1,884,131	-		ABI39_RS06790	0.33	-0.2
1,884,179	-		ABI39_RS06790	0.35	+0.3
1,884,201	-		ABI39_RS06790	0.37	-0.2
1,884,211	-		ABI39_RS06790	0.37	+0.5
1,884,214	+		ABI39_RS06790	0.37	+0.1
1,884,214	+		ABI39_RS06790	0.37	-0.2
1,884,214	+		ABI39_RS06790	0.37	+0.2
1,884,215	-		ABI39_RS06790	0.37	-0.1
1,884,273	+		ABI39_RS06790	0.41	+0.3
1,884,276	+		ABI39_RS06790	0.41	-1.3
1,884,286	-		ABI39_RS06790	0.41	-0.8
1,884,286	-		ABI39_RS06790	0.41	-0.5
1,884,286	-		ABI39_RS06790	0.41	+0.3
1,884,328	-		ABI39_RS06790	0.44	-0.8
1,884,473	-		ABI39_RS06790	0.51	+0.7
1,884,475	-		ABI39_RS06790	0.51	+0.2
1,884,486	-		ABI39_RS06790	0.52	+0.0
1,884,486	-		ABI39_RS06790	0.52	-0.1
1,884,495	+		ABI39_RS06790	0.53	+0.1
1,884,549	+		ABI39_RS06790	0.55	-0.1
1,884,550	-		ABI39_RS06790	0.56	-0.2
1,884,575	-		ABI39_RS06790	0.57	+0.2
1,884,700	-		ABI39_RS06790	0.64	-0.6
1,884,726	+		ABI39_RS06790	0.65	+0.2
1,884,835	-		ABI39_RS06790	0.71	+0.0
1,884,961	-		ABI39_RS06790	0.78	-0.9
1,885,070	+		ABI39_RS06790	0.84	+0.4
1,885,110	-		ABI39_RS06790	0.86	-1.5
1,885,128	-		ABI39_RS06790	0.87	-0.4
1,885,148	-		ABI39_RS06790	0.88	-0.8
1,885,215	-				-0.6
1,885,237	+				+0.3
1,885,237	+				+0.1
1,885,238	-				+0.4
1,885,243	-				-0.2
1,885,450	-				+0.4
1,885,660	-		ABI39_RS06795	0.27	+0.1
1,885,829	+		ABI39_RS06795	0.42	+0.1
1,885,830	-		ABI39_RS06795	0.42	+0.2
1,885,833	+		ABI39_RS06795	0.43	+0.1
1,885,967	+		ABI39_RS06795	0.55	-0.4
1,885,973	-		ABI39_RS06795	0.55	+0.1
1,885,980	-		ABI39_RS06795	0.56	-0.1
1,885,989	+		ABI39_RS06795	0.57	+0.1
1,886,006	+		ABI39_RS06795	0.58	-0.0