Strain Fitness in Escherichia coli ECRC101 around MCAODC_27360

Experiment: Control_ECRC101_WM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntgsk and aes are separated by 151 nucleotidesaes and hemH overlap by 4 nucleotides MCAODC_27355: gsk - inosine/guanosine kinase, at 2,213,262 to 2,214,566 gsk MCAODC_27360: aes - acetyl esterase, at 2,214,718 to 2,215,677 aes MCAODC_27365: hemH - ferrochelatase, at 2,215,674 to 2,216,636 hemH Position (kb) 2214 2215 2216Strain fitness (log2 ratio) -2 -1 0 1 2at 2213.820 kb on - strand, within gskat 2213.879 kb on + strand, within gskat 2213.879 kb on + strand, within gskat 2213.879 kb on + strand, within gskat 2213.879 kb on + strand, within gskat 2213.880 kb on - strand, within gskat 2213.880 kb on - strand, within gskat 2213.880 kb on - strand, within gskat 2213.904 kb on + strand, within gskat 2213.905 kb on - strand, within gskat 2213.910 kb on - strand, within gskat 2213.910 kb on - strand, within gskat 2213.912 kb on - strand, within gskat 2213.912 kb on - strand, within gskat 2214.033 kb on - strand, within gskat 2214.080 kb on + strand, within gskat 2214.080 kb on + strand, within gskat 2214.081 kb on - strand, within gskat 2214.081 kb on - strand, within gskat 2214.141 kb on + strand, within gskat 2214.145 kb on + strand, within gskat 2214.145 kb on + strand, within gskat 2214.146 kb on - strand, within gskat 2214.149 kb on + strand, within gskat 2214.149 kb on + strand, within gskat 2214.149 kb on + strand, within gskat 2214.150 kb on - strand, within gskat 2214.150 kb on - strand, within gskat 2214.150 kb on - strand, within gskat 2214.174 kb on - strand, within gskat 2214.174 kb on - strand, within gskat 2214.187 kb on + strand, within gskat 2214.188 kb on - strand, within gskat 2214.193 kb on + strand, within gskat 2214.193 kb on + strand, within gskat 2214.193 kb on + strand, within gskat 2214.193 kb on + strand, within gskat 2214.194 kb on - strand, within gskat 2214.194 kb on - strand, within gskat 2214.194 kb on - strand, within gskat 2214.194 kb on - strand, within gskat 2214.210 kb on - strand, within gskat 2214.262 kb on + strand, within gskat 2214.263 kb on - strand, within gskat 2214.263 kb on - strand, within gskat 2214.263 kb on - strand, within gskat 2214.263 kb on - strand, within gskat 2214.266 kb on + strand, within gskat 2214.267 kb on - strand, within gskat 2214.309 kb on - strand, within gskat 2214.327 kb on + strand, within gskat 2214.338 kb on - strand, within gskat 2214.352 kb on - strand, within gskat 2214.395 kb on - strand, within gskat 2214.459 kb on + strandat 2214.532 kb on + strandat 2214.533 kb on - strandat 2214.533 kb on - strandat 2214.533 kb on - strandat 2214.533 kb on - strandat 2214.546 kb on - strandat 2214.687 kb on + strandat 2214.688 kb on - strandat 2214.718 kb on - strandat 2214.753 kb on + strandat 2214.753 kb on + strandat 2214.783 kb on + strandat 2214.844 kb on + strand, within aesat 2214.844 kb on + strand, within aesat 2214.844 kb on + strand, within aesat 2214.845 kb on - strand, within aesat 2214.845 kb on - strand, within aesat 2214.847 kb on + strand, within aesat 2214.848 kb on - strand, within aesat 2214.904 kb on + strand, within aesat 2214.905 kb on - strand, within aesat 2214.905 kb on - strand, within aesat 2214.905 kb on - strand, within aesat 2214.922 kb on + strand, within aesat 2214.977 kb on + strand, within aesat 2214.977 kb on + strand, within aesat 2214.978 kb on - strand, within aesat 2215.002 kb on + strand, within aesat 2215.003 kb on - strand, within aesat 2215.003 kb on - strand, within aesat 2215.054 kb on + strand, within aesat 2215.055 kb on - strand, within aesat 2215.065 kb on + strand, within aesat 2215.065 kb on + strand, within aesat 2215.077 kb on + strand, within aesat 2215.077 kb on + strand, within aesat 2215.084 kb on + strand, within aesat 2215.085 kb on - strand, within aesat 2215.085 kb on - strand, within aesat 2215.147 kb on + strand, within aesat 2215.147 kb on + strand, within aesat 2215.148 kb on - strand, within aesat 2215.172 kb on - strand, within aesat 2215.182 kb on + strand, within aesat 2215.182 kb on + strand, within aesat 2215.182 kb on + strand, within aesat 2215.387 kb on + strand, within aesat 2215.388 kb on - strand, within aesat 2215.399 kb on + strand, within aesat 2215.399 kb on + strand, within aesat 2215.435 kb on + strand, within aesat 2215.435 kb on + strand, within aesat 2215.436 kb on - strand, within aesat 2215.449 kb on + strand, within aesat 2215.449 kb on + strand, within aesat 2215.482 kb on + strand, within aesat 2215.576 kb on + strand, within aesat 2215.576 kb on + strand, within aesat 2215.577 kb on - strand, within aesat 2215.606 kb on + strandat 2215.606 kb on + strandat 2215.662 kb on + strandat 2216.667 kb on - strandat 2216.672 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC101_WM
remove
2,213,820 - gsk MCAODC_27355 0.43 -1.0
2,213,879 + gsk MCAODC_27355 0.47 -0.1
2,213,879 + gsk MCAODC_27355 0.47 +1.2
2,213,879 + gsk MCAODC_27355 0.47 +0.7
2,213,879 + gsk MCAODC_27355 0.47 -0.1
2,213,880 - gsk MCAODC_27355 0.47 +0.4
2,213,880 - gsk MCAODC_27355 0.47 -0.1
2,213,880 - gsk MCAODC_27355 0.47 +1.2
2,213,904 + gsk MCAODC_27355 0.49 +0.5
2,213,905 - gsk MCAODC_27355 0.49 +0.7
2,213,910 - gsk MCAODC_27355 0.50 +0.5
2,213,910 - gsk MCAODC_27355 0.50 +0.3
2,213,912 - gsk MCAODC_27355 0.50 +0.9
2,213,912 - gsk MCAODC_27355 0.50 +0.4
2,214,033 - gsk MCAODC_27355 0.59 -0.3
2,214,080 + gsk MCAODC_27355 0.63 -2.1
2,214,080 + gsk MCAODC_27355 0.63 +0.4
2,214,081 - gsk MCAODC_27355 0.63 +0.6
2,214,081 - gsk MCAODC_27355 0.63 -0.2
2,214,141 + gsk MCAODC_27355 0.67 -0.2
2,214,145 + gsk MCAODC_27355 0.68 +0.3
2,214,145 + gsk MCAODC_27355 0.68 +1.3
2,214,146 - gsk MCAODC_27355 0.68 -0.0
2,214,149 + gsk MCAODC_27355 0.68 +1.2
2,214,149 + gsk MCAODC_27355 0.68 +0.6
2,214,149 + gsk MCAODC_27355 0.68 +0.3
2,214,150 - gsk MCAODC_27355 0.68 -0.4
2,214,150 - gsk MCAODC_27355 0.68 +0.2
2,214,150 - gsk MCAODC_27355 0.68 -0.0
2,214,174 - gsk MCAODC_27355 0.70 +1.0
2,214,174 - gsk MCAODC_27355 0.70 -0.1
2,214,187 + gsk MCAODC_27355 0.71 +0.2
2,214,188 - gsk MCAODC_27355 0.71 +1.3
2,214,193 + gsk MCAODC_27355 0.71 +0.7
2,214,193 + gsk MCAODC_27355 0.71 +0.6
2,214,193 + gsk MCAODC_27355 0.71 -0.2
2,214,193 + gsk MCAODC_27355 0.71 -0.6
2,214,194 - gsk MCAODC_27355 0.71 -0.2
2,214,194 - gsk MCAODC_27355 0.71 +0.3
2,214,194 - gsk MCAODC_27355 0.71 -0.2
2,214,194 - gsk MCAODC_27355 0.71 -0.5
2,214,210 - gsk MCAODC_27355 0.73 +0.7
2,214,262 + gsk MCAODC_27355 0.77 +0.4
2,214,263 - gsk MCAODC_27355 0.77 +0.5
2,214,263 - gsk MCAODC_27355 0.77 -0.4
2,214,263 - gsk MCAODC_27355 0.77 +0.1
2,214,263 - gsk MCAODC_27355 0.77 +1.1
2,214,266 + gsk MCAODC_27355 0.77 -0.1
2,214,267 - gsk MCAODC_27355 0.77 +0.7
2,214,309 - gsk MCAODC_27355 0.80 -0.9
2,214,327 + gsk MCAODC_27355 0.82 +0.6
2,214,338 - gsk MCAODC_27355 0.82 -1.4
2,214,352 - gsk MCAODC_27355 0.84 +1.4
2,214,395 - gsk MCAODC_27355 0.87 -0.1
2,214,459 + +0.9
2,214,532 + +0.3
2,214,533 - +1.7
2,214,533 - -0.4
2,214,533 - +1.0
2,214,533 - +0.1
2,214,546 - -1.3
2,214,687 + -0.5
2,214,688 - -0.9
2,214,718 - +0.6
2,214,753 + +0.9
2,214,753 + +0.3
2,214,783 + +0.9
2,214,844 + aes MCAODC_27360 0.13 +0.8
2,214,844 + aes MCAODC_27360 0.13 +0.8
2,214,844 + aes MCAODC_27360 0.13 +0.8
2,214,845 - aes MCAODC_27360 0.13 -0.7
2,214,845 - aes MCAODC_27360 0.13 -0.7
2,214,847 + aes MCAODC_27360 0.13 +0.6
2,214,848 - aes MCAODC_27360 0.14 +0.3
2,214,904 + aes MCAODC_27360 0.19 -2.2
2,214,905 - aes MCAODC_27360 0.19 +1.1
2,214,905 - aes MCAODC_27360 0.19 -0.2
2,214,905 - aes MCAODC_27360 0.19 +1.0
2,214,922 + aes MCAODC_27360 0.21 -0.4
2,214,977 + aes MCAODC_27360 0.27 -0.2
2,214,977 + aes MCAODC_27360 0.27 -0.7
2,214,978 - aes MCAODC_27360 0.27 +0.3
2,215,002 + aes MCAODC_27360 0.30 -0.1
2,215,003 - aes MCAODC_27360 0.30 -0.4
2,215,003 - aes MCAODC_27360 0.30 -0.0
2,215,054 + aes MCAODC_27360 0.35 -0.3
2,215,055 - aes MCAODC_27360 0.35 +1.1
2,215,065 + aes MCAODC_27360 0.36 -0.5
2,215,065 + aes MCAODC_27360 0.36 -0.9
2,215,077 + aes MCAODC_27360 0.37 +0.3
2,215,077 + aes MCAODC_27360 0.37 -1.5
2,215,084 + aes MCAODC_27360 0.38 -0.5
2,215,085 - aes MCAODC_27360 0.38 +0.6
2,215,085 - aes MCAODC_27360 0.38 -0.2
2,215,147 + aes MCAODC_27360 0.45 -0.3
2,215,147 + aes MCAODC_27360 0.45 -0.5
2,215,148 - aes MCAODC_27360 0.45 -1.0
2,215,172 - aes MCAODC_27360 0.47 +1.4
2,215,182 + aes MCAODC_27360 0.48 +0.3
2,215,182 + aes MCAODC_27360 0.48 +0.8
2,215,182 + aes MCAODC_27360 0.48 -0.1
2,215,387 + aes MCAODC_27360 0.70 -0.6
2,215,388 - aes MCAODC_27360 0.70 +0.3
2,215,399 + aes MCAODC_27360 0.71 -1.6
2,215,399 + aes MCAODC_27360 0.71 +0.1
2,215,435 + aes MCAODC_27360 0.75 +0.1
2,215,435 + aes MCAODC_27360 0.75 +0.7
2,215,436 - aes MCAODC_27360 0.75 -0.2
2,215,449 + aes MCAODC_27360 0.76 -0.3
2,215,449 + aes MCAODC_27360 0.76 +1.8
2,215,482 + aes MCAODC_27360 0.80 +0.4
2,215,576 + aes MCAODC_27360 0.89 -0.5
2,215,576 + aes MCAODC_27360 0.89 +1.1
2,215,577 - aes MCAODC_27360 0.89 -0.1
2,215,606 + -0.0
2,215,606 + -0.2
2,215,662 + -0.2
2,216,667 - +0.1
2,216,672 + +0.6

Or see this region's nucleotide sequence