Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt allR and allA are separated by 77 nucleotides allA and allS are separated by 229 nucleotides allS and mnmH are separated by 68 nucleotides
MCAODC_27145: allR - HTH-type transcriptional repressor AllR, at 2,154,382 to 2,155,197
allR
MCAODC_27150: allA - ureidoglycolate lyase, at 2,155,275 to 2,155,757
allA
MCAODC_27155: allS - HTH-type transcriptional activator AllS, at 2,155,987 to 2,156,913
allS
MCAODC_27160: mnmH - tRNA 2-selenouridine(34) synthase MnmH, at 2,156,982 to 2,158,076
mnmH
Position (kb)
2155
2156
2157 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2155.126 kb on + strand at 2155.127 kb on - strand at 2155.197 kb on + strand at 2155.201 kb on + strand at 2155.201 kb on + strand at 2155.201 kb on + strand at 2155.201 kb on + strand at 2155.202 kb on - strand at 2155.202 kb on - strand at 2155.202 kb on - strand at 2155.202 kb on - strand at 2155.202 kb on - strand at 2155.202 kb on - strand at 2155.202 kb on - strand at 2155.207 kb on - strand at 2155.207 kb on - strand at 2155.217 kb on + strand at 2155.218 kb on - strand at 2155.229 kb on + strand at 2155.245 kb on - strand at 2155.245 kb on - strand at 2155.245 kb on - strand at 2155.255 kb on - strand at 2155.255 kb on - strand at 2155.255 kb on - strand at 2155.304 kb on + strand at 2155.406 kb on - strand, within allA at 2155.406 kb on - strand, within allA at 2155.430 kb on + strand, within allA at 2155.430 kb on + strand, within allA at 2155.431 kb on - strand, within allA at 2155.433 kb on + strand, within allA at 2155.434 kb on - strand, within allA at 2155.434 kb on - strand, within allA at 2155.434 kb on - strand, within allA at 2155.473 kb on + strand, within allA at 2155.474 kb on - strand, within allA at 2155.527 kb on - strand, within allA at 2155.604 kb on + strand, within allA at 2155.667 kb on + strand, within allA at 2155.702 kb on - strand, within allA at 2155.711 kb on + strand at 2155.743 kb on + strand at 2155.743 kb on + strand at 2155.776 kb on + strand at 2155.777 kb on - strand at 2155.777 kb on - strand at 2155.777 kb on - strand at 2155.830 kb on + strand at 2156.063 kb on + strand at 2156.063 kb on + strand at 2156.068 kb on - strand at 2156.089 kb on + strand, within allS at 2156.089 kb on + strand, within allS at 2156.149 kb on - strand, within allS at 2156.153 kb on + strand, within allS at 2156.153 kb on + strand, within allS at 2156.153 kb on + strand, within allS at 2156.181 kb on - strand, within allS at 2156.181 kb on - strand, within allS at 2156.220 kb on + strand, within allS at 2156.272 kb on - strand, within allS at 2156.272 kb on - strand, within allS at 2156.293 kb on + strand, within allS at 2156.293 kb on + strand, within allS at 2156.294 kb on - strand, within allS at 2156.377 kb on + strand, within allS at 2156.377 kb on + strand, within allS at 2156.377 kb on + strand, within allS at 2156.378 kb on - strand, within allS at 2156.378 kb on - strand, within allS at 2156.378 kb on - strand, within allS at 2156.404 kb on + strand, within allS at 2156.404 kb on + strand, within allS at 2156.404 kb on + strand, within allS at 2156.457 kb on + strand, within allS at 2156.457 kb on + strand, within allS at 2156.477 kb on + strand, within allS at 2156.477 kb on + strand, within allS at 2156.477 kb on + strand, within allS at 2156.646 kb on + strand, within allS at 2156.839 kb on - strand at 2156.854 kb on - strand at 2156.948 kb on - strand at 2156.978 kb on - strand at 2156.978 kb on - strand at 2156.978 kb on - strand at 2156.981 kb on + strand at 2156.981 kb on + strand at 2156.981 kb on + strand at 2156.981 kb on + strand at 2156.981 kb on + strand at 2157.144 kb on + strand, within mnmH at 2157.144 kb on + strand, within mnmH at 2157.144 kb on + strand, within mnmH at 2157.144 kb on + strand, within mnmH at 2157.145 kb on - strand, within mnmH at 2157.145 kb on - strand, within mnmH at 2157.185 kb on + strand, within mnmH at 2157.186 kb on - strand, within mnmH at 2157.186 kb on - strand, within mnmH at 2157.260 kb on + strand, within mnmH at 2157.260 kb on + strand, within mnmH at 2157.260 kb on + strand, within mnmH at 2157.260 kb on + strand, within mnmH at 2157.296 kb on + strand, within mnmH at 2157.296 kb on + strand, within mnmH at 2157.296 kb on + strand, within mnmH at 2157.297 kb on - strand, within mnmH at 2157.297 kb on - strand, within mnmH at 2157.354 kb on + strand, within mnmH at 2157.355 kb on - strand, within mnmH at 2157.356 kb on + strand, within mnmH at 2157.356 kb on + strand, within mnmH at 2157.356 kb on + strand, within mnmH at 2157.357 kb on - strand, within mnmH at 2157.389 kb on + strand, within mnmH at 2157.443 kb on + strand, within mnmH at 2157.529 kb on + strand, within mnmH at 2157.529 kb on + strand, within mnmH at 2157.529 kb on + strand, within mnmH at 2157.529 kb on + strand, within mnmH at 2157.707 kb on - strand, within mnmH at 2157.762 kb on - strand, within mnmH at 2157.813 kb on + strand, within mnmH at 2157.823 kb on - strand, within mnmH at 2157.848 kb on + strand, within mnmH at 2157.873 kb on + strand, within mnmH at 2157.875 kb on + strand, within mnmH at 2157.876 kb on - strand, within mnmH at 2157.876 kb on - strand, within mnmH at 2157.876 kb on - strand, within mnmH
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 2,155,126 + +1.8 2,155,127 - -0.3 2,155,197 + -1.4 2,155,201 + +0.5 2,155,201 + +2.0 2,155,201 + -0.1 2,155,201 + -1.5 2,155,202 - -0.3 2,155,202 - -0.3 2,155,202 - +0.1 2,155,202 - +0.6 2,155,202 - +0.5 2,155,202 - -0.0 2,155,202 - +0.1 2,155,207 - -0.7 2,155,207 - +0.8 2,155,217 + -1.5 2,155,218 - +0.3 2,155,229 + -0.1 2,155,245 - +1.5 2,155,245 - +1.0 2,155,245 - +0.3 2,155,255 - +0.6 2,155,255 - +0.3 2,155,255 - -1.1 2,155,304 + -1.9 2,155,406 - allA MCAODC_27150 0.27 +0.7 2,155,406 - allA MCAODC_27150 0.27 +0.9 2,155,430 + allA MCAODC_27150 0.32 +1.6 2,155,430 + allA MCAODC_27150 0.32 -0.8 2,155,431 - allA MCAODC_27150 0.32 -0.2 2,155,433 + allA MCAODC_27150 0.33 -2.6 2,155,434 - allA MCAODC_27150 0.33 -0.1 2,155,434 - allA MCAODC_27150 0.33 +0.1 2,155,434 - allA MCAODC_27150 0.33 +0.3 2,155,473 + allA MCAODC_27150 0.41 -1.9 2,155,474 - allA MCAODC_27150 0.41 +0.6 2,155,527 - allA MCAODC_27150 0.52 +0.8 2,155,604 + allA MCAODC_27150 0.68 -1.2 2,155,667 + allA MCAODC_27150 0.81 +0.0 2,155,702 - allA MCAODC_27150 0.88 +1.2 2,155,711 + +0.2 2,155,743 + +2.1 2,155,743 + -0.2 2,155,776 + -0.6 2,155,777 - -0.5 2,155,777 - -0.4 2,155,777 - -0.3 2,155,830 + -1.2 2,156,063 + -0.1 2,156,063 + +0.4 2,156,068 - -0.8 2,156,089 + allS MCAODC_27155 0.11 -0.8 2,156,089 + allS MCAODC_27155 0.11 -0.4 2,156,149 - allS MCAODC_27155 0.17 +0.3 2,156,153 + allS MCAODC_27155 0.18 +0.3 2,156,153 + allS MCAODC_27155 0.18 +0.6 2,156,153 + allS MCAODC_27155 0.18 +0.4 2,156,181 - allS MCAODC_27155 0.21 +1.7 2,156,181 - allS MCAODC_27155 0.21 +0.7 2,156,220 + allS MCAODC_27155 0.25 -0.7 2,156,272 - allS MCAODC_27155 0.31 -0.2 2,156,272 - allS MCAODC_27155 0.31 +0.7 2,156,293 + allS MCAODC_27155 0.33 -0.0 2,156,293 + allS MCAODC_27155 0.33 +0.0 2,156,294 - allS MCAODC_27155 0.33 -0.4 2,156,377 + allS MCAODC_27155 0.42 -0.9 2,156,377 + allS MCAODC_27155 0.42 -1.0 2,156,377 + allS MCAODC_27155 0.42 -2.6 2,156,378 - allS MCAODC_27155 0.42 -2.7 2,156,378 - allS MCAODC_27155 0.42 -0.8 2,156,378 - allS MCAODC_27155 0.42 +1.4 2,156,404 + allS MCAODC_27155 0.45 +0.5 2,156,404 + allS MCAODC_27155 0.45 +0.1 2,156,404 + allS MCAODC_27155 0.45 +1.0 2,156,457 + allS MCAODC_27155 0.51 +0.5 2,156,457 + allS MCAODC_27155 0.51 -0.1 2,156,477 + allS MCAODC_27155 0.53 +1.1 2,156,477 + allS MCAODC_27155 0.53 -0.1 2,156,477 + allS MCAODC_27155 0.53 -1.9 2,156,646 + allS MCAODC_27155 0.71 -0.3 2,156,839 - -0.8 2,156,854 - +1.3 2,156,948 - +0.4 2,156,978 - -0.6 2,156,978 - -0.3 2,156,978 - -0.5 2,156,981 + +0.9 2,156,981 + -0.1 2,156,981 + +0.4 2,156,981 + -1.4 2,156,981 + +0.4 2,157,144 + mnmH MCAODC_27160 0.15 -1.6 2,157,144 + mnmH MCAODC_27160 0.15 +0.4 2,157,144 + mnmH MCAODC_27160 0.15 +0.3 2,157,144 + mnmH MCAODC_27160 0.15 +0.5 2,157,145 - mnmH MCAODC_27160 0.15 -0.0 2,157,145 - mnmH MCAODC_27160 0.15 -4.5 2,157,185 + mnmH MCAODC_27160 0.19 +0.5 2,157,186 - mnmH MCAODC_27160 0.19 -0.4 2,157,186 - mnmH MCAODC_27160 0.19 +0.7 2,157,260 + mnmH MCAODC_27160 0.25 -0.1 2,157,260 + mnmH MCAODC_27160 0.25 +0.2 2,157,260 + mnmH MCAODC_27160 0.25 +1.5 2,157,260 + mnmH MCAODC_27160 0.25 -1.8 2,157,296 + mnmH MCAODC_27160 0.29 +0.3 2,157,296 + mnmH MCAODC_27160 0.29 +1.0 2,157,296 + mnmH MCAODC_27160 0.29 +0.7 2,157,297 - mnmH MCAODC_27160 0.29 -0.3 2,157,297 - mnmH MCAODC_27160 0.29 -0.5 2,157,354 + mnmH MCAODC_27160 0.34 -0.2 2,157,355 - mnmH MCAODC_27160 0.34 +0.7 2,157,356 + mnmH MCAODC_27160 0.34 +0.6 2,157,356 + mnmH MCAODC_27160 0.34 -0.2 2,157,356 + mnmH MCAODC_27160 0.34 -0.5 2,157,357 - mnmH MCAODC_27160 0.34 +3.4 2,157,389 + mnmH MCAODC_27160 0.37 +0.2 2,157,443 + mnmH MCAODC_27160 0.42 -0.4 2,157,529 + mnmH MCAODC_27160 0.50 +0.5 2,157,529 + mnmH MCAODC_27160 0.50 +0.7 2,157,529 + mnmH MCAODC_27160 0.50 -2.5 2,157,529 + mnmH MCAODC_27160 0.50 +1.7 2,157,707 - mnmH MCAODC_27160 0.66 +0.0 2,157,762 - mnmH MCAODC_27160 0.71 -0.2 2,157,813 + mnmH MCAODC_27160 0.76 +0.6 2,157,823 - mnmH MCAODC_27160 0.77 -0.4 2,157,848 + mnmH MCAODC_27160 0.79 +0.4 2,157,873 + mnmH MCAODC_27160 0.81 +1.6 2,157,875 + mnmH MCAODC_27160 0.82 -0.6 2,157,876 - mnmH MCAODC_27160 0.82 -1.5 2,157,876 - mnmH MCAODC_27160 0.82 +0.6 2,157,876 - mnmH MCAODC_27160 0.82 -0.9
Or see this region's nucleotide sequence