Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lpxH and purE are separated by 117 nucleotides purE and purK overlap by 4 nucleotides purK and arcC are separated by 138 nucleotides
MCAODC_27050: lpxH - UDP-2,3-diacylglucosamine diphosphatase, at 2,134,409 to 2,135,131
lpxH
MCAODC_27055: purE - N5-carboxyaminoimidazole ribonucleotide mutase, at 2,135,249 to 2,135,758
purE
MCAODC_27060: purK - 5-(carboxyamino)imidazole ribonucleotide synthase, at 2,135,755 to 2,136,822
purK
MCAODC_27065: arcC - carbamate kinase, at 2,136,961 to 2,137,854
arcC
Position (kb)
2135
2136
2137 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2135.129 kb on + strand at 2135.211 kb on - strand at 2135.312 kb on - strand, within purE at 2135.401 kb on - strand, within purE at 2135.446 kb on + strand, within purE at 2135.447 kb on - strand, within purE at 2135.599 kb on + strand, within purE at 2135.599 kb on + strand, within purE at 2135.600 kb on - strand, within purE at 2135.671 kb on + strand, within purE at 2135.796 kb on + strand at 2135.797 kb on - strand at 2135.928 kb on - strand, within purK at 2135.983 kb on - strand, within purK at 2136.050 kb on + strand, within purK at 2136.051 kb on - strand, within purK at 2136.051 kb on - strand, within purK at 2136.092 kb on + strand, within purK at 2136.155 kb on + strand, within purK at 2136.204 kb on + strand, within purK at 2136.204 kb on + strand, within purK at 2136.205 kb on - strand, within purK at 2136.222 kb on - strand, within purK at 2136.315 kb on + strand, within purK at 2136.393 kb on + strand, within purK at 2136.410 kb on - strand, within purK at 2136.410 kb on - strand, within purK at 2136.486 kb on + strand, within purK at 2136.487 kb on - strand, within purK at 2136.537 kb on - strand, within purK at 2136.585 kb on + strand, within purK at 2136.615 kb on + strand, within purK at 2136.615 kb on + strand, within purK at 2136.628 kb on + strand, within purK at 2136.629 kb on - strand, within purK at 2136.810 kb on + strand at 2136.810 kb on + strand at 2136.810 kb on + strand at 2136.811 kb on - strand at 2136.903 kb on + strand at 2136.972 kb on + strand at 2136.973 kb on - strand at 2136.973 kb on - strand at 2137.056 kb on - strand, within arcC at 2137.056 kb on - strand, within arcC at 2137.173 kb on - strand, within arcC at 2137.175 kb on - strand, within arcC at 2137.175 kb on - strand, within arcC at 2137.410 kb on + strand, within arcC at 2137.596 kb on + strand, within arcC at 2137.596 kb on + strand, within arcC at 2137.598 kb on + strand, within arcC at 2137.599 kb on - strand, within arcC at 2137.599 kb on - strand, within arcC at 2137.651 kb on + strand, within arcC
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 2,135,129 + -0.3 2,135,211 - -2.0 2,135,312 - purE MCAODC_27055 0.12 -3.6 2,135,401 - purE MCAODC_27055 0.30 -4.0 2,135,446 + purE MCAODC_27055 0.39 -3.6 2,135,447 - purE MCAODC_27055 0.39 -3.2 2,135,599 + purE MCAODC_27055 0.69 -2.6 2,135,599 + purE MCAODC_27055 0.69 -2.4 2,135,600 - purE MCAODC_27055 0.69 -2.1 2,135,671 + purE MCAODC_27055 0.83 -3.6 2,135,796 + -3.6 2,135,797 - -2.7 2,135,928 - purK MCAODC_27060 0.16 -1.6 2,135,983 - purK MCAODC_27060 0.21 -3.2 2,136,050 + purK MCAODC_27060 0.28 -2.1 2,136,051 - purK MCAODC_27060 0.28 -4.5 2,136,051 - purK MCAODC_27060 0.28 -3.8 2,136,092 + purK MCAODC_27060 0.32 -2.6 2,136,155 + purK MCAODC_27060 0.37 -3.5 2,136,204 + purK MCAODC_27060 0.42 -1.0 2,136,204 + purK MCAODC_27060 0.42 +0.8 2,136,205 - purK MCAODC_27060 0.42 -2.7 2,136,222 - purK MCAODC_27060 0.44 -0.2 2,136,315 + purK MCAODC_27060 0.52 -2.9 2,136,393 + purK MCAODC_27060 0.60 -4.3 2,136,410 - purK MCAODC_27060 0.61 -4.0 2,136,410 - purK MCAODC_27060 0.61 -3.2 2,136,486 + purK MCAODC_27060 0.68 -0.8 2,136,487 - purK MCAODC_27060 0.69 -2.7 2,136,537 - purK MCAODC_27060 0.73 -3.4 2,136,585 + purK MCAODC_27060 0.78 -1.2 2,136,615 + purK MCAODC_27060 0.81 -1.1 2,136,615 + purK MCAODC_27060 0.81 -2.0 2,136,628 + purK MCAODC_27060 0.82 -1.0 2,136,629 - purK MCAODC_27060 0.82 -2.9 2,136,810 + -0.2 2,136,810 + -0.5 2,136,810 + +0.2 2,136,811 - +1.2 2,136,903 + -1.7 2,136,972 + -0.6 2,136,973 - +0.1 2,136,973 - -1.0 2,137,056 - arcC MCAODC_27065 0.11 +0.5 2,137,056 - arcC MCAODC_27065 0.11 -0.0 2,137,173 - arcC MCAODC_27065 0.24 +0.9 2,137,175 - arcC MCAODC_27065 0.24 -1.3 2,137,175 - arcC MCAODC_27065 0.24 -0.1 2,137,410 + arcC MCAODC_27065 0.50 +0.1 2,137,596 + arcC MCAODC_27065 0.71 +1.5 2,137,596 + arcC MCAODC_27065 0.71 -1.5 2,137,598 + arcC MCAODC_27065 0.71 +1.2 2,137,599 - arcC MCAODC_27065 0.71 +0.2 2,137,599 - arcC MCAODC_27065 0.71 -0.0 2,137,651 + arcC MCAODC_27065 0.77 +0.1
Or see this region's nucleotide sequence