Experiment: Control_ECRC101_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ompA and matP are separated by 74 nucleotides matP and ycbZ are separated by 185 nucleotides
MCAODC_24625: ompA - outer membrane protein A, at 1,631,189 to 1,632,229
ompA
MCAODC_24630: matP - macrodomain Ter protein MatP, at 1,632,304 to 1,632,756
matP
MCAODC_24635: ycbZ - Putative Lon protease-like protein, at 1,632,942 to 1,634,702
ycbZ
Position (kb) 1632
1633 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1631.393 kb on + strand, within ompA at 1631.424 kb on + strand, within ompA at 1631.431 kb on + strand, within ompA at 1631.431 kb on + strand, within ompA at 1631.465 kb on + strand, within ompA at 1631.465 kb on + strand, within ompA at 1631.465 kb on + strand, within ompA at 1631.465 kb on + strand, within ompA at 1631.465 kb on + strand, within ompA at 1631.465 kb on + strand, within ompA at 1631.465 kb on + strand, within ompA at 1631.531 kb on + strand, within ompA at 1631.531 kb on + strand, within ompA at 1631.531 kb on + strand, within ompA at 1631.531 kb on + strand, within ompA at 1631.531 kb on + strand, within ompA at 1631.531 kb on + strand, within ompA at 1631.532 kb on - strand, within ompA at 1631.532 kb on - strand, within ompA at 1631.553 kb on + strand, within ompA at 1631.784 kb on + strand, within ompA at 1631.784 kb on + strand, within ompA at 1631.912 kb on + strand, within ompA at 1631.952 kb on + strand, within ompA at 1631.966 kb on + strand, within ompA at 1631.993 kb on + strand, within ompA at 1632.038 kb on + strand, within ompA at 1632.085 kb on + strand, within ompA at 1632.085 kb on + strand, within ompA at 1632.190 kb on + strand at 1632.210 kb on + strand at 1632.227 kb on + strand at 1632.227 kb on + strand at 1632.227 kb on + strand at 1632.227 kb on + strand at 1632.228 kb on - strand at 1632.362 kb on + strand, within matP at 1632.492 kb on + strand, within matP at 1632.493 kb on - strand, within matP at 1632.511 kb on - strand, within matP at 1632.575 kb on - strand, within matP at 1632.596 kb on - strand, within matP at 1632.662 kb on - strand, within matP at 1632.662 kb on - strand, within matP at 1632.662 kb on - strand, within matP at 1632.662 kb on - strand, within matP at 1632.787 kb on - strand at 1632.861 kb on - strand at 1632.861 kb on - strand at 1632.876 kb on + strand at 1632.877 kb on - strand at 1633.116 kb on - strand at 1633.622 kb on + strand, within ycbZ at 1633.643 kb on + strand, within ycbZ at 1633.712 kb on + strand, within ycbZ at 1633.720 kb on + strand, within ycbZ at 1633.720 kb on + strand, within ycbZ at 1633.720 kb on + strand, within ycbZ at 1633.720 kb on + strand, within ycbZ at 1633.754 kb on + strand, within ycbZ
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC101_WM remove 1,631,393 + ompA MCAODC_24625 0.20 +0.5 1,631,424 + ompA MCAODC_24625 0.23 -0.6 1,631,431 + ompA MCAODC_24625 0.23 -0.6 1,631,431 + ompA MCAODC_24625 0.23 +0.0 1,631,465 + ompA MCAODC_24625 0.27 +3.3 1,631,465 + ompA MCAODC_24625 0.27 +1.0 1,631,465 + ompA MCAODC_24625 0.27 +0.5 1,631,465 + ompA MCAODC_24625 0.27 +0.0 1,631,465 + ompA MCAODC_24625 0.27 -1.2 1,631,465 + ompA MCAODC_24625 0.27 -2.1 1,631,465 + ompA MCAODC_24625 0.27 -0.4 1,631,531 + ompA MCAODC_24625 0.33 +0.6 1,631,531 + ompA MCAODC_24625 0.33 -0.6 1,631,531 + ompA MCAODC_24625 0.33 +1.2 1,631,531 + ompA MCAODC_24625 0.33 -0.8 1,631,531 + ompA MCAODC_24625 0.33 -0.5 1,631,531 + ompA MCAODC_24625 0.33 -0.9 1,631,532 - ompA MCAODC_24625 0.33 +0.3 1,631,532 - ompA MCAODC_24625 0.33 +0.7 1,631,553 + ompA MCAODC_24625 0.35 -0.2 1,631,784 + ompA MCAODC_24625 0.57 -0.2 1,631,784 + ompA MCAODC_24625 0.57 +2.1 1,631,912 + ompA MCAODC_24625 0.69 +0.0 1,631,952 + ompA MCAODC_24625 0.73 -0.4 1,631,966 + ompA MCAODC_24625 0.75 -0.7 1,631,993 + ompA MCAODC_24625 0.77 +0.5 1,632,038 + ompA MCAODC_24625 0.82 +2.3 1,632,085 + ompA MCAODC_24625 0.86 +0.4 1,632,085 + ompA MCAODC_24625 0.86 +1.7 1,632,190 + +0.1 1,632,210 + -0.0 1,632,227 + +0.2 1,632,227 + +0.3 1,632,227 + +0.1 1,632,227 + -0.4 1,632,228 - -0.5 1,632,362 + matP MCAODC_24630 0.13 -0.2 1,632,492 + matP MCAODC_24630 0.42 -0.2 1,632,493 - matP MCAODC_24630 0.42 -0.1 1,632,511 - matP MCAODC_24630 0.46 +2.7 1,632,575 - matP MCAODC_24630 0.60 +0.6 1,632,596 - matP MCAODC_24630 0.64 -0.4 1,632,662 - matP MCAODC_24630 0.79 +0.4 1,632,662 - matP MCAODC_24630 0.79 -0.3 1,632,662 - matP MCAODC_24630 0.79 +0.5 1,632,662 - matP MCAODC_24630 0.79 +0.6 1,632,787 - -0.0 1,632,861 - +0.9 1,632,861 - -0.4 1,632,876 + +0.8 1,632,877 - +0.1 1,633,116 - -0.4 1,633,622 + ycbZ MCAODC_24635 0.39 +0.3 1,633,643 + ycbZ MCAODC_24635 0.40 -0.9 1,633,712 + ycbZ MCAODC_24635 0.44 -0.6 1,633,720 + ycbZ MCAODC_24635 0.44 -0.9 1,633,720 + ycbZ MCAODC_24635 0.44 -0.3 1,633,720 + ycbZ MCAODC_24635 0.44 +0.8 1,633,720 + ycbZ MCAODC_24635 0.44 -0.6 1,633,754 + ycbZ MCAODC_24635 0.46 +0.1
Or see this region's nucleotide sequence